Carg13133 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13133
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein FAR-RED IMPAIRED RESPONSE 1
Location	Cucurbita_argyrosperma_scaffold_101 : 533009 .. 533554 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACGTTGTGGCTGAAATGCATGATAGAGATGATGGAATTGTTAGTTTACCGAAGGACATCCTGTTTGAAGGGGACATAGATTTTGAGCCACGGAGTGGAATTGAATTTGAATCCCACGAAGCTGCATACACATTTTATCAAGAGTATGCCAAATCAATGGGATTCACCACATCGATTAAGAAGAGTCGACGTTCAAAGAAATCAAAAGAGTTTATTGATGCAAAATTTGCATGTTCAAGATATGGAGTTACTCCTGAATCTGAGAATGGAAATAGTCGAAGGCCAAGCGTGAAAAAAGCCGACTGTAAAGCCAGTATGCATGTGAAGAGAAGGCCAGATGGAAGATGGATTATTCATGAGTTCATAAAAGATCATAATCATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAAAGCTTGCAGAGAAGAAGAACATCGTCATATTACATGCTGTTAGTGAAAGAACACGGATTATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAA

mRNA sequence

ATGGTCGACGTTGTGGCTGAAATGCATGATAGAGATGATGGAATTGTTAGTTTACCGAAGGACATCCTGTTTGAAGGGGACATAGATTTTGAGCCACGGAGTGGAATTGAATTTGAATCCCACGAAGCTGCATACACATTTTATCAAGAGTATGCCAAATCAATGGGATTCACCACATCGATTAAGAAGAGTCGACGTTCAAAGAAATCAAAAGAGTTTATTGATGCAAAATTTGCATGTTCAAGATATGGAGTTACTCCTGAATCTGAGAATGGAAATAGTCGAAGGCCAAGCGTGAAAAAAGCCGACTGTAAAGCCAGTATGCATGTGAAGAGAAGGCCAGATGGAAGATGGATTATTCATGAGTTCATAAAAGATCATAATCATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAAAGCTTGCAGAGAAGAAGAACATCGTCATATTACATGCTGTTAGTGAAAGAACACGGATTATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAA

Coding sequence (CDS)

ATGGTCGACGTTGTGGCTGAAATGCATGATAGAGATGATGGAATTGTTAGTTTACCGAAGGACATCCTGTTTGAAGGGGACATAGATTTTGAGCCACGGAGTGGAATTGAATTTGAATCCCACGAAGCTGCATACACATTTTATCAAGAGTATGCCAAATCAATGGGATTCACCACATCGATTAAGAAGAGTCGACGTTCAAAGAAATCAAAAGAGTTTATTGATGCAAAATTTGCATGTTCAAGATATGGAGTTACTCCTGAATCTGAGAATGGAAATAGTCGAAGGCCAAGCGTGAAAAAAGCCGACTGTAAAGCCAGTATGCATGTGAAGAGAAGGCCAGATGGAAGATGGATTATTCATGAGTTCATAAAAGATCATAATCATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAAAGCTTGCAGAGAAGAAGAACATCGTCATATTACATGCTGTTAGTGAAAGAACACGGATTATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAA

Protein sequence

MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIMSFYLLLHIISASIGM

Homology

[Close]

BLAST of Carg13133 vs. NCBI nr
Match: XP_022942290.1 (LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 326.2 bits (835), Expect = 6.8e-86
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 60
           MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS
Sbjct: 1   MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 60

Query: 61  IKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWII 120
           IK SRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKK DCKASMHVKRRPDGRWII
Sbjct: 61  IKNSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKTDCKASMHVKRRPDGRWII 120

Query: 121 HEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           HEFIKDHNHEFLPALAYHFRIHRNVKLAEK NIVILHAVSERTR M
Sbjct: 121 HEFIKDHNHEFLPALAYHFRIHRNVKLAEKNNIVILHAVSERTRRM 166

[Close]

BLAST of Carg13133 vs. NCBI nr
Match: XP_023529499.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo] >XP_023529507.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.3 bits (817), Expect = 8.3e-84
Identity = 159/166 (95.78%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 60
           MVDVVAEMHDRDDGIVSLPKDILFE DIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS
Sbjct: 1   MVDVVAEMHDRDDGIVSLPKDILFERDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 60

Query: 61  IKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWII 120
           IK SRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPS+KK DCKASMHVKRRPDGRWII
Sbjct: 61  IKNSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSMKKTDCKASMHVKRRPDGRWII 120

Query: 121 HEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           HEFIKDHNHEFLPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 HEFIKDHNHEFLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 166

[Close]

BLAST of Carg13133 vs. NCBI nr
Match: XP_022979146.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 2.7e-82
Identity = 156/166 (93.98%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 60
           MVDVVAEMHDRDDGIVSLPKD LFEGDID EPRSGI+FESHEAAYTFYQEYAKSMGFTTS
Sbjct: 1   MVDVVAEMHDRDDGIVSLPKDFLFEGDIDLEPRSGIDFESHEAAYTFYQEYAKSMGFTTS 60

Query: 61  IKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWII 120
           IK SRRSKKSKEFIDAKFACSRYGVTPE ENGNSRRPSVKK DCKASMHVKRRPDGRWII
Sbjct: 61  IKNSRRSKKSKEFIDAKFACSRYGVTPEPENGNSRRPSVKKTDCKASMHVKRRPDGRWII 120

Query: 121 HEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           HEFIKDHNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 HEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 166

[Close]

BLAST of Carg13133 vs. NCBI nr
Match: XP_022931375.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata] >XP_022931376.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata] >XP_022931377.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata] >XP_022931378.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 152/167 (91.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLP-KDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTT 60
           MVDVV EMHDRD GI+SLP KD LFE DIDFEP +GIEFESHEAAYTFYQEYAKSMGFTT
Sbjct: 1   MVDVVDEMHDRDGGIISLPKKDTLFEEDIDFEPHNGIEFESHEAAYTFYQEYAKSMGFTT 60

Query: 61  SIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWI 120
           SIK SRRSKKSKEFIDAKFACSRYGVTPESE+GNSRRPSVKK DCKASMHVKRRPDGRWI
Sbjct: 61  SIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWI 120

Query: 121 IHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IHEFIKDHNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 167

[Close]

BLAST of Carg13133 vs. NCBI nr
Match: XP_022984595.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima] >XP_022984596.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima] >XP_022984597.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 152/167 (91.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLP-KDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTT 60
           MVDVV EMHDRD GI+SLP KD LFE DIDFEP +GIEFESHEAAYTFYQEYAKSMGFTT
Sbjct: 1   MVDVVDEMHDRDGGIISLPKKDTLFEEDIDFEPHNGIEFESHEAAYTFYQEYAKSMGFTT 60

Query: 61  SIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWI 120
           SIK SRRSKKSKEFIDAKFACSRYGVTPESE+GNSRRPSVKK DCKASMHVKRRPDGRWI
Sbjct: 61  SIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWI 120

Query: 121 IHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IHEFIKDHNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 167

[Close]

BLAST of Carg13133 vs. TAIR10
Match: AT4G15090.1 (FRS (FAR1 Related Sequences) transcription factor family)

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-68
Identity = 130/172 (75.58%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MVDVVAEMH-DRDDGIV---SLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMG 60
           MVD+V E H +RD GIV   ++  D+ F GD+D EPR+GI+F++HEAAY FYQEYAKSMG
Sbjct: 16  MVDIVVEPHSNRDIGIVDEFNIGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMG 75

Query: 61  FTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESEN--GNSRRPSVKKADCKASMHVKRRP 120
           FTTSIK SRRSKK+K+FIDAKFACSRYGVTPESE+   +SRR +VKK DCKASMHVKRRP
Sbjct: 76  FTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSRRSTVKKTDCKASMHVKRRP 135

Query: 121 DGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           DG+WIIHEF+KDHNHE LPALAYHFRI RNVKLAEK NI ILHAVSERT+ M
Sbjct: 136 DGKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKM 187

[Close]

BLAST of Carg13133 vs. TAIR10
Match: AT3G22170.1 (far-red elongated hypocotyls 3)

HSP 1 Score: 141.0 bits (354), Expect = 7.4e-34
Identity = 87/205 (42.44%), Postives = 121/205 (59.02%), Query Frame = 0


Query: 3   DVVAEMHDRDDGIVSLPKDILFE--GDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 62
           DV  E++  D   + +P   L E    ++ EP +G+EFESH  AY+FYQEY+++MGF T+
Sbjct: 39  DVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTA 98

Query: 63  IKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSR---------------RPSVKKADCK 122
           I+ SRRSK ++EFIDAKFACSRYG   E +   +R               R +  K DCK
Sbjct: 99  IQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCK 158

Query: 123 ASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHR-----NVKLAEKKNIVILHAVS 177
           ASMHVKRRPDG+W+IH F+++HNHE LPA A   +  +       + AE K ++ L + S
Sbjct: 159 ASMHVKRRPDGKWVIHSFVREHNHELLPAQAVSEQTRKIYAAMAKQFAEYKTVISLKSDS 218

[Close]

BLAST of Carg13133 vs. TAIR10
Match: AT1G76320.1 (FAR1-related sequence 4)

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-33
Identity = 65/117 (55.56%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 36  IEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSR 95
           +EFE+HE AY FY++YAKS+GF T+   SRRS+ SKEFIDAKF+C RYG   +S++  + 
Sbjct: 1   MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAINP 60

Query: 96  RPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKN 153
           R S  K  CKASMHVKRRPDG+W ++ F+K+HNH+ LP  A++FR HRN +L +  +
Sbjct: 61  RAS-PKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSND 116

[Close]

BLAST of Carg13133 vs. TAIR10
Match: AT2G32250.1 (FAR1-related sequence 2)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-26
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 31  EPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESE 90
           E R+G++FES EAAY FY+EYA+S+GF  +IK SRRSK+S +FID K ACSR+G   E  
Sbjct: 37  ELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKA 96

Query: 91  NGNSRRPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLP 134
              + R S  K  CKA +H+KR+ D +W+I+ F+K+HNHE  P
Sbjct: 97  TAINPR-SCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 138

[Close]

BLAST of Carg13133 vs. TAIR10
Match: AT4G19990.2 (FAR1-related sequence 1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 63/149 (42.28%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 29  DFEPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGV--- 88
           + E   G EFES E A+ FY+EYA S+GFTT IK SRRS+ + +FIDAKF C+RYG    
Sbjct: 18  NLEIDEGREFESKEEAFEFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKE 77

Query: 89  ------------TPESENGNSRRPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLP 148
                        P++        S  K DCKA +HVKRR DGRW++   +K+HNHE   
Sbjct: 78  DIDTGLGTDGFNIPQARKRGRINRSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHNHEIFT 137

Query: 149 ALAYHFRIHRNVKLAEKKNIVILHAVSER 163
             A   R     +  EK N  I+  V  R
Sbjct: 138 GQADSLRELSGRRKLEKLNGAIVKEVKSR 166

[Close]

BLAST of Carg13133 vs. Swiss-Prot
Match: sp|Q9SWG3|FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-66
Identity = 130/172 (75.58%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MVDVVAEMH-DRDDGIV---SLPKDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMG 60
           MVD+V E H +RD GIV   ++  D+ F GD+D EPR+GI+F++HEAAY FYQEYAKSMG
Sbjct: 16  MVDIVVEPHSNRDIGIVDEFNIGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMG 75

Query: 61  FTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESEN--GNSRRPSVKKADCKASMHVKRRP 120
           FTTSIK SRRSKK+K+FIDAKFACSRYGVTPESE+   +SRR +VKK DCKASMHVKRRP
Sbjct: 76  FTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSRRSTVKKTDCKASMHVKRRP 135

Query: 121 DGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           DG+WIIHEF+KDHNHE LPALAYHFRI RNVKLAEK NI ILHAVSERT+ M
Sbjct: 136 DGKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKM 187

[Close]

BLAST of Carg13133 vs. Swiss-Prot
Match: sp|Q9LIE5|FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-32
Identity = 87/205 (42.44%), Postives = 121/205 (59.02%), Query Frame = 0


Query: 3   DVVAEMHDRDDGIVSLPKDILFE--GDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTS 62
           DV  E++  D   + +P   L E    ++ EP +G+EFESH  AY+FYQEY+++MGF T+
Sbjct: 39  DVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTA 98

Query: 63  IKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSR---------------RPSVKKADCK 122
           I+ SRRSK ++EFIDAKFACSRYG   E +   +R               R +  K DCK
Sbjct: 99  IQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCK 158

Query: 123 ASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHR-----NVKLAEKKNIVILHAVS 177
           ASMHVKRRPDG+W+IH F+++HNHE LPA A   +  +       + AE K ++ L + S
Sbjct: 159 ASMHVKRRPDGKWVIHSFVREHNHELLPAQAVSEQTRKIYAAMAKQFAEYKTVISLKSDS 218

[Close]

BLAST of Carg13133 vs. Swiss-Prot
Match: sp|Q6NQJ7|FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 65/117 (55.56%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 36  IEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSR 95
           +EFE+HE AY FY++YAKS+GF T+   SRRS+ SKEFIDAKF+C RYG   +S++  + 
Sbjct: 1   MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAINP 60

Query: 96  RPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKN 153
           R S  K  CKASMHVKRRPDG+W ++ F+K+HNH+ LP  A++FR HRN +L +  +
Sbjct: 61  RAS-PKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSND 116

[Close]

BLAST of Carg13133 vs. Swiss-Prot
Match: sp|Q3EBQ3|FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 31  EPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGVTPESE 90
           E R+G++FES EAAY FY+EYA+S+GF  +IK SRRSK+S +FID K ACSR+G   E  
Sbjct: 37  ELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKA 96

Query: 91  NGNSRRPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLP 134
              + R S  K  CKA +H+KR+ D +W+I+ F+K+HNHE  P
Sbjct: 97  TAINPR-SCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 138

[Close]

BLAST of Carg13133 vs. Swiss-Prot
Match: sp|Q5UBY2|FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=FRS1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 63/149 (42.28%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 29  DFEPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKKSRRSKKSKEFIDAKFACSRYGV--- 88
           + E   G EFES E A+ FY+EYA S+GFTT IK SRRS+ + +FIDAKF C+RYG    
Sbjct: 18  NLEIDEGREFESKEEAFEFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKE 77

Query: 89  ------------TPESENGNSRRPSVKKADCKASMHVKRRPDGRWIIHEFIKDHNHEFLP 148
                        P++        S  K DCKA +HVKRR DGRW++   +K+HNHE   
Sbjct: 78  DIDTGLGTDGFNIPQARKRGRINRSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHNHEIFT 137

Query: 149 ALAYHFRIHRNVKLAEKKNIVILHAVSER 163
             A   R     +  EK N  I+  V  R
Sbjct: 138 GQADSLRELSGRRKLEKLNGAIVKEVKSR 166

[Close]

BLAST of Carg13133 vs. TrEMBL
Match: tr|A0A1S3BTP2|A0A1S3BTP2_CUCME (protein FAR-RED IMPAIRED RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103493047 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 151/167 (90.42%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLP-KDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTT 60
           MVDVVAEM D +  IVSLP KDILFEGD+DFEP +GIEFESHEAAYTFYQEYAKSMGFTT
Sbjct: 1   MVDVVAEMQDTEGAIVSLPKKDILFEGDVDFEPHTGIEFESHEAAYTFYQEYAKSMGFTT 60

Query: 61  SIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWI 120
           SIK SRRSKKSKEFIDAKFACSRYGVTPESE+GNSRRPSVKK DCKASMHVKRRPDGRWI
Sbjct: 61  SIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWI 120

Query: 121 IHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IHEFIKDHNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 167

[Close]

BLAST of Carg13133 vs. TrEMBL
Match: tr|A0A0A0KXC8|A0A0A0KXC8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056770 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 7.7e-78
Identity = 153/167 (91.62%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLP-KDILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTT 60
           MVDVVAEM DR  GIVSLP KDILFEGD+DFEP +GIEFESHEAAYTFYQEYAKSMGFTT
Sbjct: 1   MVDVVAEMQDR-GGIVSLPKKDILFEGDVDFEPHTGIEFESHEAAYTFYQEYAKSMGFTT 60

Query: 61  SIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRWI 120
           SIK SRRSKKSKEFIDAKFACSRYGVTPESE+GNSRRPSVKK DCKASMHVKRRPDGRWI
Sbjct: 61  SIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWI 120

Query: 121 IHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IHEFIKDHNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRM 166

[Close]

BLAST of Carg13133 vs. TrEMBL
Match: tr|A0A2N9EXZ7|A0A2N9EXZ7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7502 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 6.3e-72
Identity = 141/168 (83.93%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPK-DI-LFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFT 60
           M D V E+H+RD G+VS PK D+ +FEGD DFEPR+GIEFESHEAAY+FYQEYAKSMGFT
Sbjct: 17  MGDFVDEVHNRDGGVVSSPKRDVTVFEGDTDFEPRNGIEFESHEAAYSFYQEYAKSMGFT 76

Query: 61  TSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRW 120
           TSIK SRRSKKSKEFIDAKFACSRYGVTPES++G+SRRPSVKK DCKASMHVKRR DG+W
Sbjct: 77  TSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKASMHVKRRADGKW 136

Query: 121 IIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IIHEFIK+HNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 137 IIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKM 184

[Close]

BLAST of Carg13133 vs. TrEMBL
Match: tr|A0A2I4HFQ8|A0A2I4HFQ8_9ROSI (protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109017138 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.4e-71
Identity = 139/168 (82.74%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPKD--ILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFT 60
           M   V E+H+RD G VS  K   I FEGD DFEPR+GIEFESHEAAY+FYQEYAKSMGFT
Sbjct: 1   MSGFVDEVHNRDGGAVSSSKSDVIAFEGDTDFEPRNGIEFESHEAAYSFYQEYAKSMGFT 60

Query: 61  TSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRW 120
           TSIK SRRSKKSKEFIDAKFACSRYGVTPES++G+SRRPSVKK DCKASMHVKRRPDG+W
Sbjct: 61  TSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKASMHVKRRPDGKW 120

Query: 121 IIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IIHEF+K+HNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IIHEFLKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKM 168

[Close]

BLAST of Carg13133 vs. TrEMBL
Match: tr|A0A2I4HFZ8|A0A2I4HFZ8_9ROSI (protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109017138 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.4e-71
Identity = 139/168 (82.74%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MVDVVAEMHDRDDGIVSLPKD--ILFEGDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFT 60
           M   V E+H+RD G VS  K   I FEGD DFEPR+GIEFESHEAAY+FYQEYAKSMGFT
Sbjct: 1   MSGFVDEVHNRDGGAVSSSKSDVIAFEGDTDFEPRNGIEFESHEAAYSFYQEYAKSMGFT 60

Query: 61  TSIKKSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSVKKADCKASMHVKRRPDGRW 120
           TSIK SRRSKKSKEFIDAKFACSRYGVTPES++G+SRRPSVKK DCKASMHVKRRPDG+W
Sbjct: 61  TSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKASMHVKRRPDGKW 120

Query: 121 IIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKKNIVILHAVSERTRIM 167
           IIHEF+K+HNHE LPALAYHFRIHRNVKLAEK NI ILHAVSERTR M
Sbjct: 121 IIHEFLKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKM 168

The following BLAST results are available for this feature:

BLAST of Carg13133 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942290.1	6.8e-86	97.59	LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschat...	[more]
XP_023529499.1	8.3e-84	95.78	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo] >XP_023529...	[more]
XP_022979146.1	2.7e-82	93.98	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima]	[more]
XP_022931375.1	2.3e-78	91.02	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata] >XP_022931376.1 pr...	[more]
XP_022984595.1	2.3e-78	91.02	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima] >XP_022984596.1 prot...	[more]

BLAST of Carg13133 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15090.1	6.0e-68	75.58	FRS (FAR1 Related Sequences) transcription factor family	[more]
AT3G22170.1	7.4e-34	42.44	far-red elongated hypocotyls 3	[more]
AT1G76320.1	6.2e-33	55.56	FAR1-related sequence 4	[more]
AT2G32250.1	5.7e-26	53.40	FAR1-related sequence 2	[more]
AT4G19990.2	1.1e-24	42.28	FAR1-related sequence 1	[more]

BLAST of Carg13133 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SWG3\|FAR1_ARATH	1.1e-66	75.58	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
sp\|Q9LIE5\|FHY3_ARATH	1.3e-32	42.44	Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE...	[more]
sp\|Q6NQJ7\|FRS4_ARATH	1.1e-31	55.56	Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=...	[more]
sp\|Q3EBQ3\|FRS2_ARATH	1.0e-24	53.40	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]
sp\|Q5UBY2\|FRS1_ARATH	1.9e-23	42.28	Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=FRS1 PE=1 SV=...	[more]

BLAST of Carg13133 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTP2\|A0A1S3BTP2_CUCME	5.9e-78	90.42	protein FAR-RED IMPAIRED RESPONSE 1 OS=Cucumis melo OX=3656 GN=LOC103493047 PE=4...	[more]
tr\|A0A0A0KXC8\|A0A0A0KXC8_CUCSA	7.7e-78	91.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056770 PE=4 SV=1	[more]
tr\|A0A2N9EXZ7\|A0A2N9EXZ7_FAGSY	6.3e-72	83.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7502 PE=4 SV=1	[more]
tr\|A0A2I4HFQ8\|A0A2I4HFQ8_9ROSI	5.4e-71	82.74	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A2I4HFZ8\|A0A2I4HFZ8_9ROSI	5.4e-71	82.74	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 OS=Juglans regia OX=51240 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR031052	FHY3/FAR1
IPR004330	FAR1_DNA_bnd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13133-RA	Carg13133-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 46..132 e-value: 1.2E-29 score: 102.8
None	No IPR available	PANTHER	PTHR31669:SF21	PROTEIN FAR-RED IMPAIRED RESPONSE 1	coord: 1..166
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	FAMILY NOT NAMED	coord: 1..166

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13133	Watermelon (97103) v2	carwmbB0043
Carg13133	Wax gourd	carwgoB0053
Carg13133	Silver-seed gourd	carcarB050
Carg13133	Cucumber (Gy14) v2	carcgybB0047
Carg13133	Cucumber (Gy14) v1	carcgyB0052
Carg13133	Cucurbita maxima (Rimu)	carcmaB0052
Carg13133	Cucurbita maxima (Rimu)	carcmaB0055
Carg13133	Cucurbita moschata (Rifu)	carcmoB0054
Carg13133	Cucurbita moschata (Rifu)	carcmoB0058
Carg13133	Cucurbita pepo (Zucchini)	carcpeB0057
Carg13133	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13133	Wild cucumber (PI 183967)	carcpiB0051
Carg13133	Cucumber (Chinese Long) v2	carcuB0047
Carg13133	Cucumber (Chinese Long) v3	carcucB0052
Carg13133	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13133	Melon (DHL92) v3.5.1	carmeB0042
Carg13133	Melon (DHL92) v3.5.1	carmeB0044
Carg13133	Melon (DHL92) v3.6.1	carmedB0043
Carg13133	Melon (DHL92) v3.6.1	carmedB0045
Carg13133	Melon (DHL92) v3.6.1	carmedB0047
Carg13133	Watermelon (Charleston Gray)	carwcgB0046
Carg13133	Watermelon (97103) v1	carwmB0043