Carg12935 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12935
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Flavin-containing monooxygenase
Location	Cucurbita_argyrosperma_scaffold_052 : 174718 .. 174909 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGAAGCAGGGAGTTTCGAAGTTCATAGAATCATATCTGACGTGGAAGATGCCACTGGTGAAGTACGGGTTGAAGCCGGAGCATCCATTTCTGGAGGACTACGCCTCCTGCCAGATGGCAATCATGCCGGAAACCTTTTTTCCGAGCGCACGCCGGGAAACGGAGGGTAAGGAATCAGTCATATAA

mRNA sequence

ATGGAACAGAAGCAGGGAGTTTCGAAGTTCATAGAATCATATCTGACGTGGAAGATGCCACTGGTGAAGTACGGGTTGAAGCCGGAGCATCCATTTCTGGAGGACTACGCCTCCTGCCAGATGGCAATCATGCCGGAAACCTTTTTTCCGAGCGCACGCCGGGAAACGGAGGGTAAGGAATCAGTCATATAA

Coding sequence (CDS)

ATGGAACAGAAGCAGGGAGTTTCGAAGTTCATAGAATCATATCTGACGTGGAAGATGCCACTGGTGAAGTACGGGTTGAAGCCGGAGCATCCATTTCTGGAGGACTACGCCTCCTGCCAGATGGCAATCATGCCGGAAACCTTTTTTCCGAGCGCACGCCGGGAAACGGAGGGTAAGGAATCAGTCATATAA

Protein sequence

MEQKQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGKESVI

Homology

[Close]

BLAST of Carg12935 vs. NCBI nr
Match: XP_023516301.1 (probable flavin-containing monooxygenase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGK 60
           KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFF   R   EGK
Sbjct: 286 KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFF---RHADEGK 338

[Close]

BLAST of Carg12935 vs. NCBI nr
Match: XP_022961182.1 (probable flavin-containing monooxygenase 1 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGK 60
           KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFF   R   EG+
Sbjct: 286 KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFF---RHADEGR 338

[Close]

BLAST of Carg12935 vs. NCBI nr
Match: XP_022987213.1 (probable flavin-containing monooxygenase 1 [Cucurbita maxima])

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-19
Identity = 49/56 (87.50%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGK 60
           KQGVSKFIESYLTWKMPL KYGLKPEHPFLEDYASCQMAIMPETFF   R   EGK
Sbjct: 286 KQGVSKFIESYLTWKMPLEKYGLKPEHPFLEDYASCQMAIMPETFF---RHADEGK 338

[Close]

BLAST of Carg12935 vs. NCBI nr
Match: XP_004144133.1 (PREDICTED: probable flavin-containing monooxygenase 1 [Cucumis sativus] >KGN66332.1 hypothetical protein Csa_1G597790 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGK 60
           + GVSKFIESYLTWKMPL KYGLKP+HPFLEDYASCQMAIMPE FF   R+  EGK
Sbjct: 281 RHGVSKFIESYLTWKMPLEKYGLKPDHPFLEDYASCQMAIMPENFF---RQADEGK 333

[Close]

BLAST of Carg12935 vs. NCBI nr
Match: XP_024167302.1 (probable flavin-containing monooxygenase 1 [Rosa chinensis] >PRQ27385.1 putative flavin-containing monooxygenase [Rosa chinensis])

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           ++ VSKFIESYL WK+PLVKYGLKPEHPFLEDYASCQMAI+PE FFP A
Sbjct: 302 RKAVSKFIESYLLWKLPLVKYGLKPEHPFLEDYASCQMAILPENFFPEA 350

[Close]

BLAST of Carg12935 vs. TAIR10
Match: AT1G19250.1 (flavin-dependent monooxygenase 1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-16
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 7   VSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           VSKFIESY+ WK+PL KYGLKP H F EDYASCQMAI+PE FF  A
Sbjct: 296 VSKFIESYVLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEA 341

[Close]

BLAST of Carg12935 vs. TAIR10
Match: AT5G45180.1 (Flavin-binding monooxygenase family protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-15
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 7   VSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           VSKFIESY+ WK+PL KYGLKP+H F EDYASCQMA++PE FF  A
Sbjct: 256 VSKFIESYVLWKLPLEKYGLKPDHAFEEDYASCQMALVPEKFFEEA 301

[Close]

BLAST of Carg12935 vs. Swiss-Prot
Match: sp|Q9LMA1|FMO1_ARATH (Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=FMO1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-14
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 7   VSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           VSKFIESY+ WK+PL KYGLKP H F EDYASCQMAI+PE FF  A
Sbjct: 296 VSKFIESYVLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEA 341

[Close]

BLAST of Carg12935 vs. Swiss-Prot
Match: sp|Q9FKE7|FMO2_ARATH (Putative flavin-containing monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=FMO2 PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-14
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 7   VSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           VSKFIESY+ WK+PL KYGLKP+H F EDYASCQMA++PE FF  A
Sbjct: 256 VSKFIESYVLWKLPLEKYGLKPDHAFEEDYASCQMALVPEKFFEEA 301

[Close]

BLAST of Carg12935 vs. TrEMBL
Match: tr|A0A0A0LZN2|A0A0A0LZN2_CUCSA (Flavin-containing monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_1G597790 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARRETEGK 60
           + GVSKFIESYLTWKMPL KYGLKP+HPFLEDYASCQMAIMPE FF   R+  EGK
Sbjct: 281 RHGVSKFIESYLTWKMPLEKYGLKPDHPFLEDYASCQMAIMPENFF---RQADEGK 333

[Close]

BLAST of Carg12935 vs. TrEMBL
Match: tr|A0A2P6PZL4|A0A2P6PZL4_ROSCH (Flavin-containing monooxygenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0304751 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.9e-17
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           ++ VSKFIESYL WK+PLVKYGLKPEHPFLEDYASCQMAI+PE FFP A
Sbjct: 302 RKAVSKFIESYLLWKLPLVKYGLKPEHPFLEDYASCQMAILPENFFPEA 350

[Close]

BLAST of Carg12935 vs. TrEMBL
Match: tr|A0A2N9ETM2|A0A2N9ETM2_FAGSY (Flavin-containing monooxygenase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6064 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 2   EQKQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSA 53
           EQ+  +SKFIESYL WK+PLVKYGLKP+HPF+EDYASCQMAI+PE FF  A
Sbjct: 305 EQQSAISKFIESYLVWKLPLVKYGLKPDHPFVEDYASCQMAILPENFFAEA 355

[Close]

BLAST of Carg12935 vs. TrEMBL
Match: tr|I1LY93|I1LY93_SOYBN (Flavin-containing monooxygenase OS=Glycine max OX=3847 GN=100790266 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARR 55
           ++G+SKFIESYL WK+PL KYGLKPEHPF+EDYASCQMAIMPE FF  A +
Sbjct: 288 RRGISKFIESYLLWKLPLEKYGLKPEHPFVEDYASCQMAIMPENFFSEAEK 338

[Close]

BLAST of Carg12935 vs. TrEMBL
Match: tr|A0A1S3UR98|A0A1S3UR98_VIGRR (Flavin-containing monooxygenase OS=Vigna radiata var. radiata OX=3916 GN=LOC106768091 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 4   KQGVSKFIESYLTWKMPLVKYGLKPEHPFLEDYASCQMAIMPETFFPSARR 55
           ++G+SKFIESYL WK+PL KYGLKPEHPF+EDYASCQMAIMPE FF  A +
Sbjct: 279 RRGISKFIESYLLWKLPLEKYGLKPEHPFVEDYASCQMAIMPENFFSEAEK 329

The following BLAST results are available for this feature:

BLAST of Carg12935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516301.1	1.1e-19	89.29	probable flavin-containing monooxygenase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022961182.1	2.5e-19	87.50	probable flavin-containing monooxygenase 1 [Cucurbita moschata]	[more]
XP_022987213.1	5.6e-19	87.50	probable flavin-containing monooxygenase 1 [Cucurbita maxima]	[more]
XP_004144133.1	3.1e-17	80.36	PREDICTED: probable flavin-containing monooxygenase 1 [Cucumis sativus] >KGN6633...	[more]
XP_024167302.1	8.9e-17	83.67	probable flavin-containing monooxygenase 1 [Rosa chinensis] >PRQ27385.1 putative...	[more]

BLAST of Carg12935 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19250.1	9.2e-16	76.09	flavin-dependent monooxygenase 1	[more]
AT5G45180.1	1.2e-15	73.91	Flavin-binding monooxygenase family protein	[more]

BLAST of Carg12935 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LMA1\|FMO1_ARATH	1.7e-14	76.09	Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=FM...	[more]
sp\|Q9FKE7\|FMO2_ARATH	2.2e-14	73.91	Putative flavin-containing monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=FM...	[more]

BLAST of Carg12935 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZN2\|A0A0A0LZN2_CUCSA	2.0e-17	80.36	Flavin-containing monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_1G597790 PE=3 ...	[more]
tr\|A0A2P6PZL4\|A0A2P6PZL4_ROSCH	5.9e-17	83.67	Flavin-containing monooxygenase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0304...	[more]
tr\|A0A2N9ETM2\|A0A2N9ETM2_FAGSY	2.9e-16	76.47	Flavin-containing monooxygenase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6064 PE=...	[more]
tr\|I1LY93\|I1LY93_SOYBN	3.8e-16	76.47	Flavin-containing monooxygenase OS=Glycine max OX=3847 GN=100790266 PE=3 SV=1	[more]
tr\|A0A1S3UR98\|A0A1S3UR98_VIGRR	3.8e-16	76.47	Flavin-containing monooxygenase OS=Vigna radiata var. radiata OX=3916 GN=LOC1067...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12935-RA	Carg12935-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23023	DIMETHYLANILINE MONOOXYGENASE	coord: 4..52
None	No IPR available	PANTHER	PTHR23023:SF200	SUBFAMILY NOT NAMED	coord: 4..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12935	Lsi06G003650	Bottle gourd (USVL1VR-Ls)	carlsiB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12935	Silver-seed gourd	carcarB103
Carg12935	Cucumber (Gy14) v2	carcgybB0101
Carg12935	Cucumber (Gy14) v1	carcgyB0112
Carg12935	Cucurbita maxima (Rimu)	carcmaB0119
Carg12935	Cucurbita maxima (Rimu)	carcmaB0120
Carg12935	Cucurbita moschata (Rifu)	carcmoB0128
Carg12935	Cucurbita moschata (Rifu)	carcmoB0129
Carg12935	Cucurbita pepo (Zucchini)	carcpeB0138
Carg12935	Cucurbita pepo (Zucchini)	carcpeB0141
Carg12935	Wild cucumber (PI 183967)	carcpiB0106
Carg12935	Cucumber (Chinese Long) v2	carcuB0101
Carg12935	Cucumber (Chinese Long) v3	carcucB0109
Carg12935	Melon (DHL92) v3.5.1	carmeB0096
Carg12935	Melon (DHL92) v3.6.1	carmedB0098
Carg12935	Watermelon (Charleston Gray)	carwcgB0094
Carg12935	Watermelon (97103) v1	carwmB0090
Carg12935	Watermelon (97103) v2	carwmbB0094
Carg12935	Wax gourd	carwgoB0110