Carg12928 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12928
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA repair protein RAD51 homolog
Location	Cucurbita_argyrosperma_scaffold_052 : 143238 .. 146269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCACAGATTCCCTCCACCATTTTCGCTTCCAATCGCTTGCTCTGTGCAATCCGCAGAGCTCTTCTGGTTCTGGGTAGTGGCTGGCAATTGCATCGAGCGATTCTTCCATTTTCGTGTCGGTGGTTTAGTATTTGACAATGGAGCGACAAAGAAACCAGAAGCCCTCTGAAGAACACGAAGAGGCCGAGGAGATACAGCACGGCCCGTTTCCCGTAGAGCAGCTCCAGGTATCACCAAGAATTAGGGTTTTTAAATCTCTTTTTTTTGATCGATCGATTACTAAATGCCTGACGAATCTCGAATTCGAGATTAAACTTCTTCTTTTCCACTTCGTCTCTAATCCTTCGAATTTATTTACATTGCTTTATCGGAATCGCGATGGGTTTTAGGTTGCGGAATTATCATTTCCGAGTGACGATTTTTAGTAATGTTGTTATTTTCATTCATGAATGTTGTACTTAAGGCATCGGGAATTGCTGCAATTGACATAAAGAAGCTTAAAGATGCTGGTTTGTGCACGGTAGAGTCTGTTGCTTACTCTCCCAGGAAAGAACTGCTTCAAATCAAGGGCATAAGCGAGGCTAAAGTCGATAAAATTATTGAAGCAGGCATGCAATTTGATTTCAATTTTTCATTTCCCATTTGCTTGTTATGTTTGTCTCTCTGTCTGAATCGCTTCACTGTCAATAGCTTCCAAGATTGTGCCATTGGGTTTCACAAGTGCTGGCCAACTCCATGCTCAGAGGCTAGAGATCATTCAATTAACATCTGGGTCAAGGGAACTTGACAAGATTCTTGAAGGTTGCTTTCTTGAAGAGCTTTCAAGTTCAATTGTCCTGTTTTTTTTCATTTTTATTATCAACTTTCGTTTGCTTACTTACACCCTCCTTTCAGGGGGAATTGAGACGGGATCCATTACTGAAATCTATGGGGAGTTTCGTTCTGGGAAAACTCAGCTTTGTCACACACTCTGTGTTACCTGCCAAGTGAGTTCAGCTTAAAATTGTATTATTAGAACTGTTTTTGGCTATGGAATCTGTTGATTCATTTCAATCATCTGAGGGTTTTGAATTATTGATCAGCTCCCACTGGATCAAGGCGGTGGAGAGGGGAAGGCGATGTACATTGATGCCGAGGGCACGTTTAGACCCCAGAGGCTACTACAGATTGCAGACAGGTTTGATGATAAGGAATGGTTGTTGTTATCTGTGTGTGTGTAATGAAATAGCTTAATGGTTGATATTGATTGTTGCAGATTTGGACTCAATGGTGCTGATGTGTTGGAGAATGTGGCCTATGCTAGAGCGTATAACACTGATCATCAGTCAAGGCTTTTGCTGGAAGCTGCTTCAATGATGGTGGAAACAAGGTACTAATCATAGTTTGTATGTGCTAGACATGTATTGTGAGATCTCACTATTGGTTGGAGAGGAGAATGAAGTATTCTTTATAAGGGTGTGGAAACCTTTTACTAGCAGATGTGTTGTAAAAACCTTGAGGAGAAACCCAAAGAGGACTCACTATTGGTTGGAGAGGAGAATGAAGTATTCTTTATAAGGGTGTGGAAACCTTTTACTAGCAGATGTGTTGTAAAAATCTTGAGGGGGAAACCCAAAGAGGACAATATCTGCTAGCAGTGGGCTTGGGCGGTTACAAATGGTATTAGAACCAGACACCGAGCGATGTGTCAGCGAGGAGTCTGAGCCTCGAAGGGGGGTGGACACGAGGTGGTATGCAAGTAAGGACGCTAAGCCCAGAAGGGAAGGATTGGAGGGTCGCACATCGATTGGAGAAGGGAACGAATGCCAGTGAGGATGCTGGGTCTCGAAGAAGGGTGGATCATAAGATCCCACATCGGTTGGGGAGGAGAATAAAACATTCTTTATAAGGGTGCAGAAACCTCTCCCTAACAGACATGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGAGAACCCAAAGAAGACAATATCTACTAGCGGTGGGCTTGAGTTGTTACATGTATACTAATAGAACTTAATACTAATACAGTGTTTTTTACACACTTCAGTTTTCATTACATTGTCACTAATATGATGCATCCGATGACATCTGGAATGATCGAAGTTTCATTGATCATCTTGATTGAAATAAATTATTGAGATCCCTTCACATTATATGTAGGTTTGCTCTCATGATAGTCGATAGCGCTACTGCCCTCTACAGAACGGATTTCTCAGGAAGGGGAGAACTTTCGGCTCGGCAAATGCATCTAGCAAAGTTCTTAAGGAGTCTCCAGAAAATGGCAGATGAGGTAAAAGGCACTCATCCCCTAAAGGGTTTAGTTTGCATTTTTCTTACCATTGACGAGCAATATCTTTTGATGATCTGGTTGTAGTTTGGTGTGGCTGTGGTCATCACAAATCAAGTGGTTGCACAGGTAGATGGTTCAGCAATCTTTGCAGGTCCTCAAATTAAGCCAATTGGTGGAAACATTATGGCTCATGCTTCTACGACAAGGTTTGTCACGGTTACAACTCAACTGGTTAAAACATTGTACCTTTGACCTAAAGGTTAGAGGTTCAATTCCTCATGTCCATAAATGAATCCAATTATATTTTATACTGCAGGCTTGCTCTACGGAAAGGAAGAGGGGAGGAACGCATTTGTAAGGTGATAAGTTCACCGTGTTTAGCCGAGGCCGAAGCACGGTTTCAAATTTCAGCTGAAGGGGTTACGGACGTCAAAGATTGACGAGTAAATTCCCTACAAACATAGCTTCCATGTGTATAAGCGAGCTCAATGGGGGCTTTGTTCATTGCAATCATGATTTCCCCAAGCAATTAATATTGCTTGCTTGCACGAGATGGCTTTTGTTTCCCTTTCTCGTCACACCATTGTGTTCATTGCAATGTATGCTGGCGAAGGCAAATCTCTTGATAAATCGTTGGCTCAGGTGTTTAAAATTTAGCTTGTTATTTATGTCATAATATTCTTAAACCTATAGTTTTATCATCTTTCCAAATTATATATTATATGGTATAATAATTGG

mRNA sequence

AAATTCACAGATTCCCTCCACCATTTTCGCTTCCAATCGCTTGCTCTGTGCAATCCGCAGAGCTCTTCTGGTTCTGGGTAGTGGCTGGCAATTGCATCGAGCGATTCTTCCATTTTCGTGTCGGTGGTTTAGTATTTGACAATGGAGCGACAAAGAAACCAGAAGCCCTCTGAAGAACACGAAGAGGCCGAGGAGATACAGCACGGCCCGTTTCCCGTAGAGCAGCTCCAGGCATCGGGAATTGCTGCAATTGACATAAAGAAGCTTAAAGATGCTGGTTTGTGCACGGTAGAGTCTGTTGCTTACTCTCCCAGGAAAGAACTGCTTCAAATCAAGGGCATAAGCGAGGCTAAAGTCGATAAAATTATTGAAGCAGCTTCCAAGATTGTGCCATTGGGTTTCACAAGTGCTGGCCAACTCCATGCTCAGAGGCTAGAGATCATTCAATTAACATCTGGGTCAAGGGAACTTGACAAGATTCTTGAAGGGGGAATTGAGACGGGATCCATTACTGAAATCTATGGGGAGTTTCGTTCTGGGAAAACTCAGCTTTGTCACACACTCTGTGTTACCTGCCAACTCCCACTGGATCAAGGCGGTGGAGAGGGGAAGGCGATGTACATTGATGCCGAGGGCACGTTTAGACCCCAGAGGCTACTACAGATTGCAGACAGATTTGGACTCAATGGTGCTGATGTGTTGGAGAATGTGGCCTATGCTAGAGCGTATAACACTGATCATCAGTCAAGGCTTTTGCTGGAAGCTGCTTCAATGATGGTGGAAACAAGGTTTGCTCTCATGATAGTCGATAGCGCTACTGCCCTCTACAGAACGGATTTCTCAGGAAGGGGAGAACTTTCGGCTCGGCAAATGCATCTAGCAAAGTTCTTAAGGAGTCTCCAGAAAATGGCAGATGAGTTTGGTGTGGCTGTGGTCATCACAAATCAAGTGGTTGCACAGGTAGATGGTTCAGCAATCTTTGCAGGTCCTCAAATTAAGCCAATTGGTGGAAACATTATGGCTCATGCTTCTACGACAAGGCTTGCTCTACGGAAAGGAAGAGGGGAGGAACGCATTTGTAAGGTGATAAGTTCACCGTGTTTAGCCGAGGCCGAAGCACGGTTTCAAATTTCAGCTGAAGGGGTTACGGACGTCAAAGATTGACGAGTAAATTCCCTACAAACATAGCTTCCATGTGTATAAGCGAGCTCAATGGGGGCTTTGTTCATTGCAATCATGATTTCCCCAAGCAATTAATATTGCTTGCTTGCACGAGATGGCTTTTGTTTCCCTTTCTCGTCACACCATTGTGTTCATTGCAATGTATGCTGGCGAAGGCAAATCTCTTGATAAATCGTTGGCTCAGGTGTTTAAAATTTAGCTTGTTATTTATGTCATAATATTCTTAAACCTATAGTTTTATCATCTTTCCAAATTATATATTATATGGTATAATAATTGG

Coding sequence (CDS)

ATGGAGCGACAAAGAAACCAGAAGCCCTCTGAAGAACACGAAGAGGCCGAGGAGATACAGCACGGCCCGTTTCCCGTAGAGCAGCTCCAGGCATCGGGAATTGCTGCAATTGACATAAAGAAGCTTAAAGATGCTGGTTTGTGCACGGTAGAGTCTGTTGCTTACTCTCCCAGGAAAGAACTGCTTCAAATCAAGGGCATAAGCGAGGCTAAAGTCGATAAAATTATTGAAGCAGCTTCCAAGATTGTGCCATTGGGTTTCACAAGTGCTGGCCAACTCCATGCTCAGAGGCTAGAGATCATTCAATTAACATCTGGGTCAAGGGAACTTGACAAGATTCTTGAAGGGGGAATTGAGACGGGATCCATTACTGAAATCTATGGGGAGTTTCGTTCTGGGAAAACTCAGCTTTGTCACACACTCTGTGTTACCTGCCAACTCCCACTGGATCAAGGCGGTGGAGAGGGGAAGGCGATGTACATTGATGCCGAGGGCACGTTTAGACCCCAGAGGCTACTACAGATTGCAGACAGATTTGGACTCAATGGTGCTGATGTGTTGGAGAATGTGGCCTATGCTAGAGCGTATAACACTGATCATCAGTCAAGGCTTTTGCTGGAAGCTGCTTCAATGATGGTGGAAACAAGGTTTGCTCTCATGATAGTCGATAGCGCTACTGCCCTCTACAGAACGGATTTCTCAGGAAGGGGAGAACTTTCGGCTCGGCAAATGCATCTAGCAAAGTTCTTAAGGAGTCTCCAGAAAATGGCAGATGAGTTTGGTGTGGCTGTGGTCATCACAAATCAAGTGGTTGCACAGGTAGATGGTTCAGCAATCTTTGCAGGTCCTCAAATTAAGCCAATTGGTGGAAACATTATGGCTCATGCTTCTACGACAAGGCTTGCTCTACGGAAAGGAAGAGGGGAGGAACGCATTTGTAAGGTGATAAGTTCACCGTGTTTAGCCGAGGCCGAAGCACGGTTTCAAATTTCAGCTGAAGGGGTTACGGACGTCAAAGATTGA

Protein sequence

MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD

Homology

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BLAST of Carg12928 vs. NCBI nr
Match: XP_022960586.1 (DNA repair protein RAD51 homolog [Cucurbita moschata] >XP_022987254.1 DNA repair protein RAD51 homolog [Cucurbita maxima])

HSP 1 Score: 655.2 bits (1689), Expect = 1.2e-184
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. NCBI nr
Match: XP_023515549.1 (DNA repair protein RAD51 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 653.7 bits (1685), Expect = 3.5e-184
Identity = 339/340 (99.71%), Postives = 339/340 (99.71%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEEHEE EEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEHEEVEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. NCBI nr
Match: XP_022147563.1 (DNA repair protein RAD51 homolog [Momordica charantia])

HSP 1 Score: 652.5 bits (1682), Expect = 7.8e-184
Identity = 337/340 (99.12%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIA+ID+KKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIASIDVKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. NCBI nr
Match: XP_004144057.1 (PREDICTED: DNA repair protein RAD51 homolog [Cucumis sativus] >XP_008450977.1 PREDICTED: DNA repair protein RAD51 homolog [Cucumis melo] >KGN66336.1 hypothetical protein Csa_1G597830 [Cucumis sativus])

HSP 1 Score: 648.3 bits (1671), Expect = 1.5e-182
Identity = 335/340 (98.53%), Postives = 339/340 (99.71%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEE EEA+EIQHGPFPVEQLQASGIAA+D+KKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEQEEADEIQHGPFPVEQLQASGIAAMDVKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. NCBI nr
Match: XP_010261674.1 (PREDICTED: DNA repair protein RAD51 homolog isoform X1 [Nelumbo nucifera] >XP_010261675.1 PREDICTED: DNA repair protein RAD51 homolog isoform X1 [Nelumbo nucifera] >XP_010261676.1 PREDICTED: DNA repair protein RAD51 homolog isoform X1 [Nelumbo nucifera])

HSP 1 Score: 633.6 bits (1633), Expect = 3.8e-178
Identity = 324/339 (95.58%), Postives = 336/339 (99.12%), Query Frame = 0


Query: 2   ERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKEL 61
           ++QR+QK +EEHEE EEIQHGPFP+EQLQASGIA+ID+KKLKDAGLCTVESVAYSPRK+L
Sbjct: 7   QQQRHQKMAEEHEEVEEIQHGPFPIEQLQASGIASIDVKKLKDAGLCTVESVAYSPRKDL 66

Query: 62  LQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETG 121
           LQIKGISEAKVDKIIEAASK+VPLGFTSA QLHAQRLEIIQ+TSGSRELDKILEGGIETG
Sbjct: 67  LQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETG 126

Query: 122 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 181
           SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL
Sbjct: 127 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 186

Query: 182 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSA 241
           NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFA+MIVDSATALYRTDFSGRGELSA
Sbjct: 187 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAIMIVDSATALYRTDFSGRGELSA 246

Query: 242 RQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL 301
           RQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL
Sbjct: 247 RQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL 306

Query: 302 ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 307 ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 345

[Close]

BLAST of Carg12928 vs. TAIR10
Match: AT5G20850.1 (RAS associated with diabetes protein 51)

HSP 1 Score: 597.4 bits (1539), Expect = 5.4e-171
Identity = 301/340 (88.53%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           ME++RNQ   ++ ++ EE QHGPFPVEQLQA+GIA++D+KKL+DAGLCTVE VAY+PRK+
Sbjct: 4   MEQRRNQNAVQQQDD-EETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKD 63

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGIS+AKVDKI+EAASK+VPLGFTSA QLHAQR EIIQ+TSGSRELDK+LEGGIET
Sbjct: 64  LLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGIET 123

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITE+YGEFRSGKTQLCHTLCVTCQLP+DQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 124 GSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 183

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMM+ETRFAL+IVDSATALYRTDFSGRGELS
Sbjct: 184 LNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGELS 243

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSA+FAGPQ KPIGGNIMAHA+TTR
Sbjct: 244 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTR 303

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGR EERICKVISSPCL EAEARFQIS EGVTD KD
Sbjct: 304 LALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDCKD 342

[Close]

BLAST of Carg12928 vs. TAIR10
Match: AT3G22880.1 (DNA repair (Rad51) family protein)

HSP 1 Score: 326.2 bits (835), Expect = 2.3e-89
Identity = 172/337 (51.04%), Postives = 230/337 (68.25%), Query Frame = 0


Query: 4   QRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKELLQ 63
           + +Q    E EE +E +     +++L A GI A D+KKL++AG+ T   +    +K L  
Sbjct: 9   ETSQMQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTG 68

Query: 64  IKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSI 123
           IKG+SEAKVDKI EAA KIV  G+ +      +R  ++++T+G + LD +L GGIET +I
Sbjct: 69  IKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAI 128

Query: 124 TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNG 183
           TE +GEFRSGKTQL HTLCVT QLP +  GG GK  YID EGTFRP R++ IA+RFG++ 
Sbjct: 129 TEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP 188

Query: 184 ADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQ 243
             VL+N+ YARAY  +HQ  LLL  A+ M E  F ++IVDS  AL+R DF+GRGEL+ RQ
Sbjct: 189 GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQ 248

Query: 244 MHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLAL 303
             LA+ L  L K+A+EF VAV +TNQV+A   G    + P+ KP GG+++AHA+T RL  
Sbjct: 249 QKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPK-KPAGGHVLAHAATIRLLF 308

Query: 304 RKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           RKG+G+ R+CKV  +P LAEAEA FQI+  G+ D KD
Sbjct: 309 RKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344

[Close]

BLAST of Carg12928 vs. TAIR10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-24
Identity = 81/271 (29.89%), Postives = 131/271 (48.34%), Query Frame = 0


Query: 86  GFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTC 145
           G  +A  +  +   + ++T+   +LD IL GGI    +TEI G    GKTQ+   L V  
Sbjct: 112 GAKNAWDMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNV 171

Query: 146 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD--------------------RFGLNGAD 205
           Q+P + GG  GKA+YID EG+F  +R LQIA+                    +  +   D
Sbjct: 172 QIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPED 231

Query: 206 VLENVAYARAYNTDHQSRLLLEAASMMVETR-FALMIVDSATALYRTDFSGRGELSARQM 265
           +LEN+ Y R  +   Q  L+      + E +   ++IVDS T  +R D+    +L+ R  
Sbjct: 232 ILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYD---DLAQRTR 291

Query: 266 HLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALR 325
            L++      K+A +F +AVV+ NQV  +    +     Q+    G+  +H+ T R+ L 
Sbjct: 292 VLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSF----QLALALGDSWSHSCTNRVIL- 351

Query: 326 KGRGEERICKVISSPCLAEAEARFQISAEGV 336
              G+ER   +  SP L  A A + +++ G+
Sbjct: 352 YWNGDERYAYIDKSPSLPSASASYTVTSRGL 374

[Close]

BLAST of Carg12928 vs. TAIR10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3))

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-20
Identity = 78/284 (27.46%), Postives = 127/284 (44.72%), Query Frame = 0


Query: 102 QLTSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 161
           +LT+G   LD  L GGI   S+TEI  E   GKTQLC  L +  QLP+  GG  G ++Y+
Sbjct: 20  KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79

Query: 162 DAEGTFRPQRLLQIADRFGLNGADVLEN--------VAYARAYNTDHQSRLL--LEAASM 221
            +E  F  +RL Q++  F  +   +  N        V     ++ DH   ++  ++    
Sbjct: 80  HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139

Query: 222 MVETRF--ALMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKMADEFGVAVVITN 281
             +TRF   L+++DS  AL+R++F     +L  R     K    L+++A +F +A+VITN
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199

Query: 282 QVVAQVDGS-------------AIFAGPQIKPIGGNIMAHASTTRLALRK---------- 340
           QV   V+ S                +G ++ P  G   A+   +R  + +          
Sbjct: 200 QVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVKDRS 259

[Close]

BLAST of Carg12928 vs. TAIR10
Match: AT1G07745.1 (homolog of RAD51 D)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-12
Identity = 55/211 (26.07%), Postives = 90/211 (42.65%), Query Frame = 0


Query: 103 LTSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 162
           L++G +E D +L+GG   G +TE+ G   SGKTQ C     +           G+ +Y+D
Sbjct: 89  LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASV-----AENHLGRVLYLD 148

Query: 163 AEGTFRPQRLLQI--ADRFGLNGADVLENVAYARAY------NTDHQSRLLLEAASMMVE 222
              +F  +R+ Q   +      G  V+  +     Y      +T     + L     + E
Sbjct: 149 TGNSFSARRIAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNE 208

Query: 223 TRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQV 282
           +R  L++VDS ++L      G G      M    +L  L+K+A E  +A+++TN  V   
Sbjct: 209 SRLRLLVVDSISSLITPILGGSGSQGRALMVAIGYL--LKKLAHEHSIAILVTNHTV--- 268

Query: 283 DGSAIFAGPQIKPIGGNIMAHASTTRLALRK 306
              A   G + KP  G         RL+L +
Sbjct: 269 --GAGGEGGKTKPALGETWKSIPHVRLSLSR 287

[Close]

BLAST of Carg12928 vs. Swiss-Prot
Match: sp|Q40134|RAD51_SOLLC (DNA repair protein RAD51 homolog OS=Solanum lycopersicum OX=4081 GN=RAD51 PE=2 SV=1)

HSP 1 Score: 610.5 bits (1573), Expect = 1.1e-173
Identity = 314/342 (91.81%), Postives = 331/342 (96.78%), Query Frame = 0


Query: 1   MERQ-RNQKP-SEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPR 60
           ME+Q RNQK   ++++E E++QHGPFPVEQLQASGIAA+D+KKLKDAGLCTVESV Y+PR
Sbjct: 1   MEQQHRNQKSMQDQNDEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAPR 60

Query: 61  KELLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGI 120
           KELLQIKGISEAKVDKIIEAASK+VPLGFTSA QLHAQRLEIIQ+TSGS+ELDKILEGGI
Sbjct: 61  KELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGGI 120

Query: 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
           ETGSITEIYGEFR GKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR
Sbjct: 121 ETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180

Query: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240
           +GLNG DVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE
Sbjct: 181 YGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240

Query: 241 LSARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAST 300
           LSARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSA+FAGPQIKPIGGNIMAHAST
Sbjct: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAGPQIKPIGGNIMAHAST 300

Query: 301 TRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           TRLALRKGR EERICKV+SSPCLAEAEARFQIS EGVTDVKD
Sbjct: 301 TRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTDVKD 342

[Close]

BLAST of Carg12928 vs. Swiss-Prot
Match: sp|Q9XED7|R51A2_MAIZE (DNA repair protein RAD51 homolog B OS=Zea mays OX=4577 GN=RAD51B PE=2 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 4.0e-171
Identity = 308/335 (91.94%), Postives = 326/335 (97.31%), Query Frame = 0


Query: 6   NQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKELLQIK 65
           +QK S   EE E  +HGPFP+EQLQASGIAA+D+KKLKDAGLCTVESVAYSPRK+LLQIK
Sbjct: 7   HQKASPPIEE-EATEHGPFPIEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKDLLQIK 66

Query: 66  GISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSITE 125
           GISEAKVDKIIEAASK+VPLGFTSA QLHAQRLEIIQLT+GSRELD+IL+GGIETGSITE
Sbjct: 67  GISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITE 126

Query: 126 IYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGAD 185
           +YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKA+YIDAEGTFRPQR+LQIADRFGLNGAD
Sbjct: 127 MYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRILQIADRFGLNGAD 186

Query: 186 VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMH 245
           VLENVAYARAYNTDHQSRLLLEAASMMVETRFALM+VDSATALYRTDFSGRGELSARQMH
Sbjct: 187 VLENVAYARAYNTDHQSRLLLEAASMMVETRFALMVVDSATALYRTDFSGRGELSARQMH 246

Query: 246 LAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 305
           LAKFLRSLQK+ADEFGVAVVITNQVVAQVDG+A+FAGPQIKPIGGNIMAHASTTRL LRK
Sbjct: 247 LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRK 306

Query: 306 GRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           GRGEERICKVISSPCLAEAEARFQIS+EGVTDVKD
Sbjct: 307 GRGEERICKVISSPCLAEAEARFQISSEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. Swiss-Prot
Match: sp|P94102|RAD51_ARATH (DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=RAD51 PE=1 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 9.7e-170
Identity = 301/340 (88.53%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           ME++RNQ   ++ ++ EE QHGPFPVEQLQA+GIA++D+KKL+DAGLCTVE VAY+PRK+
Sbjct: 4   MEQRRNQNAVQQQDD-EETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKD 63

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGIS+AKVDKI+EAASK+VPLGFTSA QLHAQR EIIQ+TSGSRELDK+LEGGIET
Sbjct: 64  LLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGIET 123

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITE+YGEFRSGKTQLCHTLCVTCQLP+DQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 124 GSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 183

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMM+ETRFAL+IVDSATALYRTDFSGRGELS
Sbjct: 184 LNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGELS 243

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSA+FAGPQ KPIGGNIMAHA+TTR
Sbjct: 244 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTR 303

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGR EERICKVISSPCL EAEARFQIS EGVTD KD
Sbjct: 304 LALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDCKD 342

[Close]

BLAST of Carg12928 vs. Swiss-Prot
Match: sp|Q67EU8|R51A1_MAIZE (DNA repair protein RAD51 homolog A OS=Zea mays OX=4577 GN=RAD51A PE=2 SV=2)

HSP 1 Score: 591.3 bits (1523), Expect = 7.0e-168
Identity = 295/322 (91.61%), Postives = 316/322 (98.14%), Query Frame = 0


Query: 19  IQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEA 78
           ++HGPFP+EQLQASGIAA+D+KKLKD+GL TVE+VAY+PRK+LLQIKGISEAK DKIIEA
Sbjct: 19  VEHGPFPIEQLQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEA 78

Query: 79  ASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSITEIYGEFRSGKTQLC 138
           ASKIVPLGFTSA QLHAQRLEIIQ+T+GSRELDKILEGGIETGSITEIYGEFRSGKTQLC
Sbjct: 79  ASKIVPLGFTSASQLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLC 138

Query: 139 HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNT 198
           HT CVTCQLPLDQGGGEGKA+YIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNT
Sbjct: 139 HTPCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNT 198

Query: 199 DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKMAD 258
           DHQSRLLLEAASMM+ETRFALM+VDSATALYRTDFSGRGELSARQMH+AKFLRSLQK+AD
Sbjct: 199 DHQSRLLLEAASMMIETRFALMVVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLAD 258

Query: 259 EFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISS 318
           EFGVAVVITNQVVAQVDGSA+FAGPQ KPIGGNIMAHASTTRLALRKGRGEERICKVISS
Sbjct: 259 EFGVAVVITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISS 318

Query: 319 PCLAEAEARFQISAEGVTDVKD 341
           PCLAEAEARFQ+++EG+ DVKD
Sbjct: 319 PCLAEAEARFQLASEGIADVKD 340

[Close]

BLAST of Carg12928 vs. Swiss-Prot
Match: sp|Q06609|RAD51_HUMAN (DNA repair protein RAD51 homolog 1 OS=Homo sapiens OX=9606 GN=RAD51 PE=1 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 6.6e-134
Identity = 232/324 (71.60%), Postives = 286/324 (88.27%), Query Frame = 0


Query: 17  EEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKII 76
           EE   GP P+ +L+  GI A D+KKL++AG  TVE+VAY+P+KEL+ IKGISEAK DKI+
Sbjct: 16  EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75

Query: 77  EAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETGSITEIYGEFRSGKTQ 136
             A+K+VP+GFT+A + H +R EIIQ+T+GS+ELDK+L+GGIETGSITE++GEFR+GKTQ
Sbjct: 76  AEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 135

Query: 137 LCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAY 196
           +CHTL VTCQLP+D+GGGEGKAMYID EGTFRP+RLL +A+R+GL+G+DVL+NVAYARA+
Sbjct: 136 ICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 195

Query: 197 NTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKM 256
           NTDHQ++LL +A++MMVE+R+AL+IVDSATALYRTD+SGRGELSARQMHLA+FLR L ++
Sbjct: 196 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 255

Query: 257 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVI 316
           ADEFGVAVVITNQVVAQVDG+A+FA    KPIGGNI+AHASTTRL LRKGRGE RICK+ 
Sbjct: 256 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIY 315

Query: 317 SSPCLAEAEARFQISAEGVTDVKD 341
            SPCL EAEA F I+A+GV D KD
Sbjct: 316 DSPCLPEAEAMFAINADGVGDAKD 339

[Close]

BLAST of Carg12928 vs. TrEMBL
Match: tr|A0A1S3BRK0|A0A1S3BRK0_CUCME (DNA repair protein RAD51 homolog OS=Cucumis melo OX=3656 GN=LOC103492402 PE=3 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 9.7e-183
Identity = 335/340 (98.53%), Postives = 339/340 (99.71%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEE EEA+EIQHGPFPVEQLQASGIAA+D+KKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEQEEADEIQHGPFPVEQLQASGIAAMDVKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. TrEMBL
Match: tr|A0A0A0M2A5|A0A0A0M2A5_CUCSA (DNA repair protein RAD51 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G597830 PE=3 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 9.7e-183
Identity = 335/340 (98.53%), Postives = 339/340 (99.71%), Query Frame = 0


Query: 1   MERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKE 60
           MERQRNQKPSEE EEA+EIQHGPFPVEQLQASGIAA+D+KKLKDAGLCTVESVAYSPRKE
Sbjct: 1   MERQRNQKPSEEQEEADEIQHGPFPVEQLQASGIAAMDVKKLKDAGLCTVESVAYSPRKE 60

Query: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120
           LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET
Sbjct: 61  LLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIET 120

Query: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180
           GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG
Sbjct: 121 GSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 180

Query: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240
           LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS
Sbjct: 181 LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELS 240

Query: 241 ARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300
           ARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR
Sbjct: 241 ARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 300

Query: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 LALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340

[Close]

BLAST of Carg12928 vs. TrEMBL
Match: tr|A0A1U8AHW0|A0A1U8AHW0_NELNU (DNA repair protein RAD51 homolog OS=Nelumbo nucifera OX=4432 GN=LOC104600454 PE=3 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 2.5e-178
Identity = 324/339 (95.58%), Postives = 336/339 (99.12%), Query Frame = 0


Query: 2   ERQRNQKPSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPRKEL 61
           ++QR+QK +EEHEE EEIQHGPFP+EQLQASGIA+ID+KKLKDAGLCTVESVAYSPRK+L
Sbjct: 7   QQQRHQKMAEEHEEVEEIQHGPFPIEQLQASGIASIDVKKLKDAGLCTVESVAYSPRKDL 66

Query: 62  LQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGIETG 121
           LQIKGISEAKVDKIIEAASK+VPLGFTSA QLHAQRLEIIQ+TSGSRELDKILEGGIETG
Sbjct: 67  LQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETG 126

Query: 122 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 181
           SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL
Sbjct: 127 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 186

Query: 182 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSA 241
           NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFA+MIVDSATALYRTDFSGRGELSA
Sbjct: 187 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAIMIVDSATALYRTDFSGRGELSA 246

Query: 242 RQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL 301
           RQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL
Sbjct: 247 RQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRL 306

Query: 302 ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 307 ALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 345

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BLAST of Carg12928 vs. TrEMBL
Match: tr|A0A067KCL1|A0A067KCL1_JATCU (DNA repair protein RAD51 homolog OS=Jatropha curcas OX=180498 GN=JCGZ_07537 PE=3 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 1.8e-176
Identity = 325/343 (94.75%), Postives = 335/343 (97.67%), Query Frame = 0


Query: 1   MERQRNQK---PSEEHEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSP 60
           ME+QR+QK     ++HEE EE+QHGPFPVEQLQ SGIAA+DIKKLKDAGLCTVESVAYSP
Sbjct: 1   MEQQRHQKTVHQQQQHEELEEMQHGPFPVEQLQESGIAALDIKKLKDAGLCTVESVAYSP 60

Query: 61  RKELLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGG 120
           RKELLQIKGIS+AKVDKIIEAASK+VPLGFTSA QLHAQRLEIIQ+TSGSRELDKILEGG
Sbjct: 61  RKELLQIKGISDAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGG 120

Query: 121 IETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 180
           IETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD
Sbjct: 121 IETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD 180

Query: 181 RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG 240
           RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG
Sbjct: 181 RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRG 240

Query: 241 ELSARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAS 300
           ELSARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAS
Sbjct: 241 ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAS 300

Query: 301 TTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           TTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 TTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 343

[Close]

BLAST of Carg12928 vs. TrEMBL
Match: tr|A0A2I4FJL3|A0A2I4FJL3_9ROSI (DNA repair protein RAD51 homolog OS=Juglans regia OX=51240 GN=LOC108999396 PE=3 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 4.0e-176
Identity = 323/342 (94.44%), Postives = 335/342 (97.95%), Query Frame = 0


Query: 1   MERQRNQKPSEE--HEEAEEIQHGPFPVEQLQASGIAAIDIKKLKDAGLCTVESVAYSPR 60
           ME+QRNQK ++E  H E EEIQHGPFPVEQLQASGIA+IDIKKL+DAGLCTVESVAYSPR
Sbjct: 1   MEQQRNQKMAQEQQHGEVEEIQHGPFPVEQLQASGIASIDIKKLRDAGLCTVESVAYSPR 60

Query: 61  KELLQIKGISEAKVDKIIEAASKIVPLGFTSAGQLHAQRLEIIQLTSGSRELDKILEGGI 120
           K+LLQIKGISEAKVDKI+EAASK+VPLGFTSA QLHAQRLEIIQ+TSGSRELDKILEGGI
Sbjct: 61  KDLLQIKGISEAKVDKIVEAASKVVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGI 120

Query: 121 ETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
           ETGSITE+YGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR
Sbjct: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180

Query: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240
           FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE
Sbjct: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE 240

Query: 241 LSARQMHLAKFLRSLQKMADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAST 300
           LSARQMHLAKFLRSLQK+ADEFGVAVVITNQVVAQVDGSA+FAGPQIKPIGGNIMAHAST
Sbjct: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQIKPIGGNIMAHAST 300

Query: 301 TRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 341
           TRLALRKGR EERICKVISSPCLAEAEARFQISAEGVTDVKD
Sbjct: 301 TRLALRKGRAEERICKVISSPCLAEAEARFQISAEGVTDVKD 342

The following BLAST results are available for this feature:

BLAST of Carg12928 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960586.1	1.2e-184	100.00	DNA repair protein RAD51 homolog [Cucurbita moschata] >XP_022987254.1 DNA repair...	[more]
XP_023515549.1	3.5e-184	99.71	DNA repair protein RAD51 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022147563.1	7.8e-184	99.12	DNA repair protein RAD51 homolog [Momordica charantia]	[more]
XP_004144057.1	1.5e-182	98.53	PREDICTED: DNA repair protein RAD51 homolog [Cucumis sativus] >XP_008450977.1 PR...	[more]
XP_010261674.1	3.8e-178	95.58	PREDICTED: DNA repair protein RAD51 homolog isoform X1 [Nelumbo nucifera] >XP_01...	[more]

BLAST of Carg12928 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20850.1	5.4e-171	88.53	RAS associated with diabetes protein 51	[more]
AT3G22880.1	2.3e-89	51.04	DNA repair (Rad51) family protein	[more]
AT2G45280.2	3.4e-24	29.89	RAS associated with diabetes protein 51C	[more]
AT5G57450.1	5.1e-20	27.46	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT1G07745.1	5.1e-12	26.07	homolog of RAD51 D	[more]

BLAST of Carg12928 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q40134\|RAD51_SOLLC	1.1e-173	91.81	DNA repair protein RAD51 homolog OS=Solanum lycopersicum OX=4081 GN=RAD51 PE=2 S...	[more]
sp\|Q9XED7\|R51A2_MAIZE	4.0e-171	91.94	DNA repair protein RAD51 homolog B OS=Zea mays OX=4577 GN=RAD51B PE=2 SV=1	[more]
sp\|P94102\|RAD51_ARATH	9.7e-170	88.53	DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=RAD51 PE=1...	[more]
sp\|Q67EU8\|R51A1_MAIZE	7.0e-168	91.61	DNA repair protein RAD51 homolog A OS=Zea mays OX=4577 GN=RAD51A PE=2 SV=2	[more]
sp\|Q06609\|RAD51_HUMAN	6.6e-134	71.60	DNA repair protein RAD51 homolog 1 OS=Homo sapiens OX=9606 GN=RAD51 PE=1 SV=1	[more]

BLAST of Carg12928 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRK0\|A0A1S3BRK0_CUCME	9.7e-183	98.53	DNA repair protein RAD51 homolog OS=Cucumis melo OX=3656 GN=LOC103492402 PE=3 SV...	[more]
tr\|A0A0A0M2A5\|A0A0A0M2A5_CUCSA	9.7e-183	98.53	DNA repair protein RAD51 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G597830 PE=3...	[more]
tr\|A0A1U8AHW0\|A0A1U8AHW0_NELNU	2.5e-178	95.58	DNA repair protein RAD51 homolog OS=Nelumbo nucifera OX=4432 GN=LOC104600454 PE=...	[more]
tr\|A0A067KCL1\|A0A067KCL1_JATCU	1.8e-176	94.75	DNA repair protein RAD51 homolog OS=Jatropha curcas OX=180498 GN=JCGZ_07537 PE=3...	[more]
tr\|A0A2I4FJL3\|A0A2I4FJL3_9ROSI	4.0e-176	94.44	DNA repair protein RAD51 homolog OS=Juglans regia OX=51240 GN=LOC108999396 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0003697	single-stranded DNA binding
GO:0000150	recombinase activity
GO:0003690	double-stranded DNA binding
GO:0008094	DNA-dependent ATPase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0006259	DNA metabolic process
GO:1990426	mitotic recombination-dependent replication fork processing
GO:0000724	double-strand break repair via homologous recombination

Vocabulary: **INTERPRO**
Term	Definition
IPR010995	DNA_repair_Rad51/TF_NusA_a-hlx
IPR027417	P-loop_NTPase
IPR033925	Rad51_DMC1_RadA
IPR020588	RecA_ATP-bd
IPR020587	RecA_monomer-monomer_interface
IPR011941	DNA_recomb/repair_Rad51
IPR016467	DNA_recomb/repair_RecA-like
IPR013632	DNA_recomb/repair_Rad51_C
IPR003593	AAA+_ATPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:1990426	mitotic recombination-dependent replication fork processing
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0000150	recombinase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12928-RA	Carg12928-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 120..307 e-value: 6.3E-7 score: 39.0
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 85..338 e-value: 2.0E-125 score: 417.1
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 23..94 e-value: 4.3E-34 score: 118.3
None	No IPR available	PFAM	PF14520	HHH_5	coord: 32..80 e-value: 3.2E-6 score: 27.5
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 98..340 e-value: 1.2E-82 score: 279.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 9..340
None	No IPR available	PANTHER	PTHR22942:SF45	SUBFAMILY NOT NAMED	coord: 9..340
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 11..340 e-value: 1.4E-135 score: 449.4
IPR011941	DNA recombination/repair protein Rad51	TIGRFAM	TIGR02239	TIGR02239	coord: 26..340 e-value: 3.7E-176 score: 582.7
IPR020587	DNA recombination and repair protein RecA, monomer-monomer interface	PROSITE	PS50163	RECA_3	coord: 277..340 score: 15.621
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 99..270 score: 47.55
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 103..335 e-value: 6.01405E-136 score: 388.48
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 102..339
IPR010995	DNA repair Rad51/transcription factor NusA, alpha-helical	SUPERFAMILY	SSF47794	Rad51 N-terminal domain-like	coord: 18..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12928	Cla011127	Watermelon (97103) v1	carwmB0090
Carg12928	Csa1G597830	Cucumber (Chinese Long) v2	carcuB0101
Carg12928	MELO3C015555	Melon (DHL92) v3.5.1	carmeB0096
Carg12928	ClCG03G014730	Watermelon (Charleston Gray)	carwcgB0094
Carg12928	CSPI01G29040	Wild cucumber (PI 183967)	carcpiB0106
Carg12928	Cucsa.142090	Cucumber (Gy14) v1	carcgyB0112
Carg12928	CmaCh10G007970	Cucurbita maxima (Rimu)	carcmaB0119
Carg12928	CmoCh10G008240	Cucurbita moschata (Rifu)	carcmoB0128
Carg12928	Lsi06G003720	Bottle gourd (USVL1VR-Ls)	carlsiB086
Carg12928	Cp4.1LG18g02850	Cucurbita pepo (Zucchini)	carcpeB0138
Carg12928	CsGy1G028260	Cucumber (Gy14) v2	carcgybB0101
Carg12928	MELO3C015555.2	Melon (DHL92) v3.6.1	carmedB0098
Carg12928	CsaV3_1G041430	Cucumber (Chinese Long) v3	carcucB0109
Carg12928	Cla97C03G064960	Watermelon (97103) v2	carwmbB0094
Carg12928	Bhi02G001473	Wax gourd	carwgoB0110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12928	Silver-seed gourd	carcarB103
Carg12928	Cucurbita maxima (Rimu)	carcmaB0120
Carg12928	Cucurbita moschata (Rifu)	carcmoB0129
Carg12928	Cucurbita pepo (Zucchini)	carcpeB0141