Carg12885 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12885
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein-lysine N-methyltransferase
Location	Cucurbita_argyrosperma_scaffold_043 : 969145 .. 969635 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTATTCTCGCCGCTTCCCAGTTTCGCATTGCGATTTGATCGCTACGGCTCGCACTGTCTGTACAATCCGACCACCAACCATGGTGGAGGTGCTCGGCATCGACGTCTCTGTTCCTCCTAGCCTCCATCTCATCTCTGCTTTCCTCGCCATGGAGCCAGCTGATTCTTTACTTTGCATGGCCAGGTACCACTCTAATACCCCCACTTAACTTCAGCGGAAATGCTCTCATACTAACGCGCTTTCTATCTCTGTGCCCACTTTATTGGAGTTTTATATAATTTCTCGAATGGATTACACATTTCTTCTCGATTCGTTTATTTGCGTTTCTCATAATGGAGGTGGATAACTTTTTTTTTTTTTTTTGTCTCTTTTAGGGAATTGGGTCGCGGATTAGTGACCGAGACAGTGCAGAGGTTCATTTGGGATCATTGCATTAGCAAAGCTGTTGAGATTCTAAACCATTTCACTTCCATTTCATTGTTTTAA

mRNA sequence

TTTCTCTATTCTCGCCGCTTCCCAGTTTCGCATTGCGATTTGATCGCTACGGCTCGCACTGTCTGTACAATCCGACCACCAACCATGGTGGAGGTGCTCGGCATCGACGTCTCTGTTCCTCCTAGCCTCCATCTCATCTCTGCTTTCCTCGCCATGGAGCCAGCTGATTCTTTACTTTGCATGGCCAGGGAATTGGGTCGCGGATTAGTGACCGAGACAGTGCAGAGGTTCATTTGGGATCATTGCATTAGCAAAGCTGTTGAGATTCTAAACCATTTCACTTCCATTTCATTGTTTTAA

Coding sequence (CDS)

ATGGTGGAGGTGCTCGGCATCGACGTCTCTGTTCCTCCTAGCCTCCATCTCATCTCTGCTTTCCTCGCCATGGAGCCAGCTGATTCTTTACTTTGCATGGCCAGGGAATTGGGTCGCGGATTAGTGACCGAGACAGTGCAGAGGTTCATTTGGGATCATTGCATTAGCAAAGCTGTTGAGATTCTAAACCATTTCACTTCCATTTCATTGTTTTAA

Protein sequence

MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVEILNHFTSISLF

Homology

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BLAST of Carg12885 vs. NCBI nr
Match: XP_022946299.1 (LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 6.5e-24
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M EVLGIDVSVPPSLHLISAFLAME ADSLLCMARELGRGLVTETVQRFIWDHCISKA E
Sbjct: 1  MAEVLGIDVSVPPSLHLISAFLAMEAADSLLCMARELGRGLVTETVQRFIWDHCISKAQE 60

Query: 61 ILNHF 66
          I NHF
Sbjct: 61 I-NHF 64

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BLAST of Carg12885 vs. NCBI nr
Match: XP_022998961.1 (branched-chain-amino-acid aminotransferase-like protein 1 [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E LGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRG VTETVQRFIWDHCISKA E
Sbjct: 1  MAEELGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGSVTETVQRFIWDHCISKAQE 60

Query: 61 ILNHF 66
          I NHF
Sbjct: 61 I-NHF 64

[Close]

BLAST of Carg12885 vs. NCBI nr
Match: XP_008455033.1 (PREDICTED: LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E LGID SVPPSLHL+SAFL+MEPADSLL +AR+LG GLVTETVQ+FIWDHCI+KA E
Sbjct: 1  MAEELGIDGSVPPSLHLLSAFLSMEPADSLLSIARDLGHGLVTETVQKFIWDHCITKAQE 60

Query: 61 ILNHF 66
           +NHF
Sbjct: 61 -MNHF 64

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BLAST of Carg12885 vs. NCBI nr
Match: XP_022150719.1 (LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E  GI+V V PSLHL+SAFLAMEPADSLL MARELG GLVTETVQ+FIWDHCISKA E
Sbjct: 1  MAEEFGIEVCVSPSLHLVSAFLAMEPADSLLSMARELGGGLVTETVQKFIWDHCISKAQE 60

Query: 61 ILN 64
          + N
Sbjct: 61 MGN 63

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BLAST of Carg12885 vs. NCBI nr
Match: KGN60876.1 (hypothetical protein Csa_2G020980 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-18
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E L IDVS+PP LH +SAFL+MEPADSLL +AR+LGRGLVTE VQ+FIWDHCI+KA E
Sbjct: 1  MAEELRIDVSLPPGLHFLSAFLSMEPADSLLSIARDLGRGLVTEAVQKFIWDHCITKAQE 60

Query: 61 ILNHF 66
           +NHF
Sbjct: 61 -MNHF 64

[Close]

BLAST of Carg12885 vs. TAIR10
Match: AT5G27400.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-07
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 15 LHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKA 59
          L+++SAFLA+EP DS++ +AR    G +TE  QRF W+ C+  A
Sbjct: 12 LNVLSAFLAIEPVDSVITLARGCTGGSITENAQRFFWEICVEAA 55

[Close]

BLAST of Carg12885 vs. TrEMBL
Match: tr|A0A1S3C025|A0A1S3C025_CUCME (LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103495303 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E LGID SVPPSLHL+SAFL+MEPADSLL +AR+LG GLVTETVQ+FIWDHCI+KA E
Sbjct: 1  MAEELGIDGSVPPSLHLLSAFLSMEPADSLLSIARDLGHGLVTETVQKFIWDHCITKAQE 60

Query: 61 ILNHF 66
           +NHF
Sbjct: 61 -MNHF 64

[Close]

BLAST of Carg12885 vs. TrEMBL
Match: tr|A0A0A0LLL5|A0A0A0LLL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020980 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MVEVLGIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 60
          M E L IDVS+PP LH +SAFL+MEPADSLL +AR+LGRGLVTE VQ+FIWDHCI+KA E
Sbjct: 1  MAEELRIDVSLPPGLHFLSAFLSMEPADSLLSIARDLGRGLVTEAVQKFIWDHCITKAQE 60

Query: 61 ILNHF 66
           +NHF
Sbjct: 61 -MNHF 64

[Close]

BLAST of Carg12885 vs. TrEMBL
Match: tr|A0A2P2MXI3|A0A2P2MXI3_RHIMU (Uncharacterized protein MANES_09G163800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 6  GIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAVE 61
          G+D + PP LHL+S FLAMEP DSLL MARE G G +T+ VQRF+W+HCISK V+
Sbjct: 5  GLDPNTPPGLHLVSGFLAMEPTDSLLSMARECGGGSITDGVQRFVWEHCISKTVK 59

[Close]

BLAST of Carg12885 vs. TrEMBL
Match: tr|A0A067JI38|A0A067JI38_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23380 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 7  IDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAV 60
          +D S+PP LHL+SAFLAMEP DSL+ +AR  G GL+T  +QRFIWDHCISKA+
Sbjct: 6  LDPSIPPGLHLVSAFLAMEPTDSLISIARASGGGLITGRMQRFIWDHCISKAI 58

[Close]

BLAST of Carg12885 vs. TrEMBL
Match: tr|A0A1Q3D660|A0A1Q3D660_CEPFO (Methyltransf_16 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31394 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 6  GIDVSVPPSLHLISAFLAMEPADSLLCMARELGRGLVTETVQRFIWDHCISKAV 60
          G+D   PP LHL+SAFL+MEPADSL+ +AR  G G VT TVQRFIWDHCI+K V
Sbjct: 5  GLDPETPPGLHLVSAFLSMEPADSLISLARACGGGAVTVTVQRFIWDHCINKPV 58

The following BLAST results are available for this feature:

BLAST of Carg12885 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946299.1	6.5e-24	93.85	LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 [...	[more]
XP_022998961.1	1.9e-23	92.31	branched-chain-amino-acid aminotransferase-like protein 1 [Cucurbita maxima]	[more]
XP_008455033.1	2.2e-19	78.46	PREDICTED: LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like ...	[more]
XP_022150719.1	2.4e-18	79.37	LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 [...	[more]
KGN60876.1	5.3e-18	73.85	hypothetical protein Csa_2G020980 [Cucumis sativus]	[more]

BLAST of Carg12885 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27400.1	8.8e-07	47.73	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

BLAST of Carg12885 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12885 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C025\|A0A1S3C025_CUCME	1.4e-19	78.46	LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 1 O...	[more]
tr\|A0A0A0LLL5\|A0A0A0LLL5_CUCSA	3.5e-18	73.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020980 PE=4 SV=1	[more]
tr\|A0A2P2MXI3\|A0A2P2MXI3_RHIMU	3.4e-13	65.45	Uncharacterized protein MANES_09G163800 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]
tr\|A0A067JI38\|A0A067JI38_JATCU	5.8e-13	67.92	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23380 PE=4 SV=1	[more]
tr\|A0A1Q3D660\|A0A1Q3D660_CEPFO	5.8e-13	68.52	Methyltransf_16 domain-containing protein (Fragment) OS=Cephalotus follicularis ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12885-RA	Carg12885-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12885	Cla019865	Watermelon (97103) v1	carwmB0907
Carg12885	Csa2G020980	Cucumber (Chinese Long) v2	carcuB0917
Carg12885	ClCG02G016020	Watermelon (Charleston Gray)	carwcgB0883
Carg12885	CSPI02G03650	Wild cucumber (PI 183967)	carcpiB0938
Carg12885	Cucsa.091750	Cucumber (Gy14) v1	carcgyB1020
Carg12885	CmaCh05G011570	Cucurbita maxima (Rimu)	carcmaB1246
Carg12885	CmoCh05G011680	Cucurbita moschata (Rifu)	carcmoB1216
Carg12885	Lsi11G005190	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12885	CsGy2G003770	Cucumber (Gy14) v2	carcgybB0890
Carg12885	Cla97C02G041800	Watermelon (97103) v2	carwmbB0946
Carg12885	Bhi05G001665	Wax gourd	carwgoB1046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12885	Silver-seed gourd	carcarB587
Carg12885	Cucurbita maxima (Rimu)	carcmaB1241
Carg12885	Cucurbita moschata (Rifu)	carcmoB1212
Carg12885	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12885	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12885	Cucumber (Chinese Long) v3	carcucB0940
Carg12885	Melon (DHL92) v3.5.1	carmeB0893
Carg12885	Melon (DHL92) v3.6.1	carmedB0900
Carg12885	Watermelon (97103) v2	carwmbB0949