Carg12752 (gene) Silver-seed gourd

Overview
NameCarg12752
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionshort integuments 2, mitochondrial
LocationCucurbita_argyrosperma_scaffold_021 : 1194582 .. 1195058 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGTAAGGGAAGGATTTCTTATTAGACTCTTAAGAGTGTTTATGGCTTTCTATGCTAAAAAGAGAGAAAGACGTTAATTATTGTGTGGGTTTTTGTATAACCCCACCTTTGTTTGACTTTCATTCCTCTCCATGAAAGCGGTGTATAAATCTAAAAGGATAACTGTGTTCTTTTTCTCTGATTCATTTGACCAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

mRNA sequence

ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

Coding sequence (CDS)

ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

Protein sequence

MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQFEALQKAMKITSQGSGSSSESVKETTYPIQGR
Homology
[Close]
BLAST of Carg12752 vs. NCBI nr
Match: XP_023518228.1 (short integuments 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKITSQGS 78
           +QFEALQKAMKI  + +
Sbjct: 327 LQFEALQKAMKIAHKAA 342

[Close]
BLAST of Carg12752 vs. NCBI nr
Match: XP_022924906.1 (short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924907.1 short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924908.1 short integuments 2, mitochondrial [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAT SGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATFSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKI 73
           VQFEALQKAMKI
Sbjct: 327 VQFEALQKAMKI 337

[Close]
BLAST of Carg12752 vs. NCBI nr
Match: XP_022966362.1 (short integuments 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYA LSGFDG NVEDENDLESLIE
Sbjct: 284 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAMLSGFDG-NVEDENDLESLIE 343

Query: 61  VQFEALQKAMKI 73
           +QFEALQKAMKI
Sbjct: 344 LQFEALQKAMKI 354

[Close]
BLAST of Carg12752 vs. NCBI nr
Match: XP_022156767.1 (short integuments 2, mitochondrial isoform X1 [Momordica charantia] >XP_022156768.1 short integuments 2, mitochondrial isoform X1 [Momordica charantia] >XP_022156769.1 short integuments 2, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H+F+LNDLRPKR  P  NKSDVVYVEDLVT+VQRALY +LS FDG NVEDENDLESLIE+
Sbjct: 277 HKFNLNDLRPKRGAPPTNKSDVVYVEDLVTEVQRALYTSLSEFDG-NVEDENDLESLIEL 336

Query: 62  QFEALQKAMKI 73
           QFEALQKAMKI
Sbjct: 337 QFEALQKAMKI 346

[Close]
BLAST of Carg12752 vs. NCBI nr
Match: XP_022156770.1 (short integuments 2, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H+F+LNDLRPKR  P  NKSDVVYVEDLVT+VQRALY +LS FDG NVEDENDLESLIE+
Sbjct: 176 HKFNLNDLRPKRGAPPTNKSDVVYVEDLVTEVQRALYTSLSEFDG-NVEDENDLESLIEL 235

Query: 62  QFEALQKAMKI 73
           QFEALQKAMKI
Sbjct: 236 QFEALQKAMKI 245

[Close]
BLAST of Carg12752 vs. TAIR10
Match: AT2G41670.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-14
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 4   FSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQF 63
           ++L DLR  +R   P+ S + YV D++++VQR+LY TLS FDG + EDENDLE LIE QF
Sbjct: 272 YNLKDLR-HQRTKQPDSSALHYVGDMISEVQRSLYITLSEFDG-DTEDENDLECLIEQQF 331

Query: 64  EALQKAMKITSQGS 78
           E LQKA+KI  + S
Sbjct: 332 EVLQKALKIPHKAS 343

[Close]
BLAST of Carg12752 vs. Swiss-Prot
Match: sp|Q8L607|SIN2_ARATH (Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-13
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 4   FSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQF 63
           ++L DLR  +R   P+ S + YV D++++VQR+LY TLS FDG + EDENDLE LIE QF
Sbjct: 272 YNLKDLR-HQRTKQPDSSALHYVGDMISEVQRSLYITLSEFDG-DTEDENDLECLIEQQF 331

Query: 64  EALQKAMKITSQGS 78
           E LQKA+KI  + S
Sbjct: 332 EVLQKALKIPHKAS 343

[Close]
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A1S3CCP6|A0A1S3CCP6_CUCME (Mitochondrial GTPase 1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           HRF+LNDL+PKRR  LPNKSD VYVEDLVT+VQ ALY TLS FDG NVEDEN LESLIEV
Sbjct: 220 HRFNLNDLQPKRR-ALPNKSDAVYVEDLVTEVQCALYTTLSEFDG-NVEDENGLESLIEV 279

Query: 62  QFEALQKAMKIT 74
           QFEALQKAMK++
Sbjct: 280 QFEALQKAMKVS 289

[Close]
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A1S3CEC4|A0A1S3CEC4_CUCME (short integuments 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           HRF+LNDL+PKRR  LPNKSD VYVEDLVT+VQ ALY TLS FDG NVEDEN LESLIEV
Sbjct: 269 HRFNLNDLQPKRR-ALPNKSDAVYVEDLVTEVQCALYTTLSEFDG-NVEDENGLESLIEV 328

Query: 62  QFEALQKAMKIT 74
           QFEALQKAMK++
Sbjct: 329 QFEALQKAMKVS 338

[Close]
BLAST of Carg12752 vs. TrEMBL
Match: tr|V4U5Q1|V4U5Q1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006119mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H ++L DLRPKRR P PN SDV Y+EDLVT VQRAL+ +LS FDG NVEDENDLESLIE 
Sbjct: 49  HEYNLKDLRPKRRKP-PNASDVTYIEDLVTGVQRALHVSLSEFDG-NVEDENDLESLIEQ 108

Query: 62  QFEALQKAMKITSQGS 78
           QFE LQ+A+KI  + S
Sbjct: 109 QFEVLQRALKIPHKAS 122

[Close]
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A067E3U5|A0A067E3U5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0171871mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H ++L DLRPKRR P PN SDV Y+EDLVT VQRAL+ +LS FDG NVEDENDLESLIE 
Sbjct: 47  HEYNLKDLRPKRRKP-PNASDVTYIEDLVTGVQRALHVSLSEFDG-NVEDENDLESLIEQ 106

Query: 62  QFEALQKAMKITSQGS 78
           QFE LQ+A+KI  + S
Sbjct: 107 QFEVLQRALKIPHKAS 120

[Close]
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A2H5QL12|A0A2H5QL12_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_240060 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H ++L DLRPKRR P PN SDV Y+EDLVT VQRAL+ +LS FDG NVEDENDLES+IE 
Sbjct: 268 HEYNLKDLRPKRRKP-PNASDVTYIEDLVTGVQRALHVSLSEFDG-NVEDENDLESVIEQ 327

Query: 62  QFEALQKAMKITSQGS 78
           QFE LQ+A+KI  + S
Sbjct: 328 QFEVLQRALKIPHKAS 341

The following BLAST results are available for this feature:
BLAST of Carg12752 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518228.12.3e-2990.91short integuments 2, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022924906.14.0e-2997.22short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924907.1 short in... [more]
XP_022966362.11.5e-2895.83short integuments 2, mitochondrial [Cucurbita maxima][more]
XP_022156767.12.8e-2283.10short integuments 2, mitochondrial isoform X1 [Momordica charantia] >XP_02215676... [more]
XP_022156770.12.8e-2283.10short integuments 2, mitochondrial isoform X2 [Momordica charantia][more]
BLAST of Carg12752 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41670.14.4e-1455.41P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
BLAST of Carg12752 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8L607|SIN2_ARATH7.9e-1355.41Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 ... [more]
BLAST of Carg12752 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCP6|A0A1S3CCP6_CUCME2.6e-2181.94Mitochondrial GTPase 1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=3 SV=1[more]
tr|A0A1S3CEC4|A0A1S3CEC4_CUCME2.6e-2181.94short integuments 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|V4U5Q1|V4U5Q1_9ROSI2.1e-1869.74Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006119mg PE=4 ... [more]
tr|A0A067E3U5|A0A067E3U5_CITSI2.1e-1869.74Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0171871... [more]
tr|A0A2H5QL12|A0A2H5QL12_CITUN4.7e-1868.42Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_240060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12752-RACarg12752-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12752MELO3C023106Melon (DHL92) v3.5.1carmeB0288
Carg12752CmaCh07G013290Cucurbita maxima (Rimu)carcmaB0398
Carg12752CmoCh07G013720Cucurbita moschata (Rifu)carcmoB0395
Carg12752Cp4.1LG19g00410Cucurbita pepo (Zucchini)carcpeB0400
Carg12752Bhi03G002148Wax gourdcarwgoB0371
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None