Carg12686 (gene) Silver-seed gourd

NameCarg12686
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranscription factor bHLH101-like
LocationCucurbita_argyrosperma_scaffold_021 : 648060 .. 649962 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTGTAGCTAAGAAACTTAAACATAATGCTAGCGAACGCGATCGTCGCAAGAAGATGAACTCTCTCTATACTTCTCTTCGCTGCTTGCTTCCATCGACAAATCGATCGGTAGGTTTTGCTTCTTCATTAGGCATGAATGTGTTAATATGTTTTTCAAATTTGGATATAAATTCTAATAGGATTGTGATATCGCACGTCGGTTAGAACAAAACATTCTTTATAAGCATGTGAAAACTTCTCTCTGTCAAACACGTTTTAAAAACCTTGAGGGGAAGCGTGAAAGGGAAAACCCAAAGAGGACAATATTCGTTAGCGGTGGGCCTGGGCTGTTACACATGGTATTAGAGCTAGACACCGGGCGATGTGTCAATGAGGAGGTTGAGCCTTGAAGGGGGTGGATACGAGGCGGTATGTCAGCAAGGACGTTGGGCCCCGAAAAGGGGTGGATTATGATATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTCTCCCTAGCAGACTCGTTTTAAAAACCTTAAGAGGGAGCCCAAAAGGGAAAACTCAAAGAGGACAATATCTACTGGACGTAAGCTGCTACAAATGGTATTAGAGCACGGGCAATATGTCAATGAGGAGGTTGAGTCCCGAAGGGGGTGGACACGAGGCAGTGTGCCAACAAGGACGCTGGGCCCTGAAAGAAGGTGGATTGGGGAGTCCCACGTCGATTGGAGAAGAGAATGAGTGTCAGCAAGGACGTGGGCCCCGAAGGGGGGTGAACTATGATATCTCACGTCAGTTGGGGAGGAAAACAAAACATTCTTTATAGGGGTGTGGAAACCTTTTCGTATCATACACATTTTAAAAACTTTGAAGGGAAGCCCGAAAGAAAAAGTCGTTCAAAGAGGACAATATCTACTAGCGTTAGACTTAAACTAGTTAAGGAGTGTTCATGGGTTGGATTTCGTCGGGATTAGAACATTTTTTGACGGTCGAAAATCACTTCTTGCAGAAAACAATGAGTAATCCAGCCACAATATCAAGGGCTTTGAAGTATATACCTGAGCTAAGACAGCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGTTAAGACCATTTCTACCTTTCAGTCGTTCGATGGGAGGCACTTCTTTACTTTGCTCGTTCAGGTATAATTTAATATTTTTTCTATACAAATGTTCGTGGGTTGGATCGGGTCGGGTCGGATTATAATATTTTTCCGACCCAATCTAATTGTTTGAGTTGTGAATTTGTGAGATCTCACATCAGTAGGAGAGGGAAATAAAACATTCTTTGCAAGGTGTAGAAACCTCTTCATAATAGACCCGTTTTAAAACATCGAAGGAAAGCCCTATTCTCGGGTTCGTAATAACTAAAAATATTTAAGAAAACGGAGATATTTTATTTGTTTATTTAAAGTTTTAAGCCTTAATATATAATTTGATTTGATTTGATTTTATGTTTAATGCAGGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

mRNA sequence

AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

Coding sequence (CDS)

AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

Protein sequence

NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHSLDEEELLAKPNTPSRVLQEILNRKF
BLAST of Carg12686 vs. NCBI nr
Match: XP_022925194.1 (transcription factor bHLH101-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 1.1e-65
Identity = 144/226 (63.72%), Postives = 149/226 (65.93%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSP+PSHHVK+ESCSPPSAGDGRHRGGGGCGGDDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPRPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                            HVEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQHVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+KEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 198

BLAST of Carg12686 vs. NCBI nr
Match: XP_022966445.1 (transcription factor bHLH101-like [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 3.7e-61
Identity = 138/226 (61.06%), Postives = 144/226 (63.72%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSPQPSHHVK+ESCSPPSAGDGRHRGGGG G DDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGFGSDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                             VEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQQVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+K+APWMGCSSCAVNWLRENEALLQLTSNDT KLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKDAPWMGCSSCAVNWLRENEALLQLTSNDTLKLKFSQILHS 198

BLAST of Carg12686 vs. NCBI nr
Match: XP_023518049.1 (transcription factor bHLH101-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49
Identity = 126/226 (55.75%), Postives = 133/226 (58.85%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSP---------------------------- 60
           NPQSTNGRSSELFIQFSSPQPSHHVK+ESCSP                            
Sbjct: 16  NPQSTNGRSSELFIQFSSPQPSHHVKVESCSPXXXXXXXXXXXXXXXXXXXXAVAKKLKH 75

Query: 61  -PSAGDGRHRGGGGCGG--------------DDPVA-------------HVEELRRRKQG 120
             S  D R +                      +P               HVEELRRRKQG
Sbjct: 76  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQHVEELRRRKQG 135

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN++THDQQKQVRK+KEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQIL S
Sbjct: 136 LETKINAMTHDQQKQVRKNKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILRS 195

BLAST of Carg12686 vs. NCBI nr
Match: KGN54725.1 (hypothetical protein Csa_4G434980 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13
Identity = 57/117 (48.72%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   D  
Sbjct: 28  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SFCAVNWLSETEALLQIALEDQT 87

Query: 115 -FKLKFSQILHSLDEEELL---------------------AKPNTPSRVLQEILNRK 149
             +L FSQIL SL+E+ LL                     AK NT  RVLQEILN+K
Sbjct: 88  HTQLPFSQILLSLEEDGLLLLTASSFRSFNGRLFLTLLLQAKANTLPRVLQEILNKK 140

BLAST of Carg12686 vs. NCBI nr
Match: XP_004144366.2 (PREDICTED: transcription factor bHLH101-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 77/209 (36.84%), Postives = 92/209 (44.02%), Query Frame = 0

Query: 11  ELFIQFSSPQPSHHVKIESC-SPPSAG--------------------------------- 70
           E F QFSS QPS  VK+ESC +P SAG                                 
Sbjct: 2   EPFFQFSSLQPSQQVKLESCPTPLSAGVVADDITDMAKKLKHNANERDRRRKINSLYCSL 61

Query: 71  -------DGRHRGGGGCGGDDPVAH-------VEELRRRKQGLETKINSITHDQQKQVRK 130
                  D   R          + +       VE LRRRK+GL TK+N    +  KQ+RK
Sbjct: 62  RCLLPPTDSMKRMSNPSTISKALKYIPELQQQVEGLRRRKEGLVTKLN---EENLKQIRK 121

Query: 131 DKEAPWMGCSSCAVNWLRENEALLQLTSNDT--FKLKFSQILHSLDEEELL--------- 149
           + + PWM  S CAVNWL E EALLQ+   D    +L FSQIL SL+E+ LL         
Sbjct: 122 NNKEPWMS-SFCAVNWLSETEALLQIALEDQTHTQLPFSQILLSLEEDGLLLLTASSFRS 181

BLAST of Carg12686 vs. TrEMBL
Match: tr|A0A0A0KYH3|A0A0A0KYH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G434980 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 57/117 (48.72%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   D  
Sbjct: 28  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SFCAVNWLSETEALLQIALEDQT 87

Query: 115 -FKLKFSQILHSLDEEELL---------------------AKPNTPSRVLQEILNRK 149
             +L FSQIL SL+E+ LL                     AK NT  RVLQEILN+K
Sbjct: 88  HTQLPFSQILLSLEEDGLLLLTASSFRSFNGRLFLTLLLQAKANTLPRVLQEILNKK 140

BLAST of Carg12686 vs. TrEMBL
Match: tr|A0A1S3C1M0|A0A1S3C1M0_CUCME (transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 54/117 (46.15%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   +  
Sbjct: 94  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SLCAVNWLSETEALLQIALEEQT 153

Query: 115 -FKLKFSQILHSLDEEELL---------------------AKPNTPSRVLQEILNRK 149
             +L FSQIL SL+++ LL                     AK N   RVLQEILN+K
Sbjct: 154 HTQLPFSQILLSLEDDGLLLSTASSFRSSNGSLFFTLLLQAKANILPRVLQEILNKK 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022925194.11.1e-6563.72transcription factor bHLH101-like [Cucurbita moschata][more]
XP_022966445.13.7e-6161.06transcription factor bHLH101-like [Cucurbita maxima][more]
XP_023518049.17.2e-4955.75transcription factor bHLH101-like [Cucurbita pepo subsp. pepo][more]
KGN54725.16.3e-1348.72hypothetical protein Csa_4G434980 [Cucumis sativus][more]
XP_004144366.23.1e-1236.84PREDICTED: transcription factor bHLH101-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KYH3|A0A0A0KYH3_CUCSA4.2e-1348.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G434980 PE=4 SV=1[more]
tr|A0A1S3C1M0|A0A1S3C1M0_CUCME1.3e-1146.15transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12686-RACarg12686-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84