Carg12686 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTGTAGCTAAGAAACTTAAACATAATGCTAGCGAACGCGATCGTCGCAAGAAGATGAACTCTCTCTATACTTCTCTTCGCTGCTTGCTTCCATCGACAAATCGATCGGTAGGTTTTGCTTCTTCATTAGGCATGAATGTGTTAATATGTTTTTCAAATTTGGATATAAATTCTAATAGGATTGTGATATCGCACGTCGGTTAGAACAAAACATTCTTTATAAGCATGTGAAAACTTCTCTCTGTCAAACACGTTTTAAAAACCTTGAGGGGAAGCGTGAAAGGGAAAACCCAAAGAGGACAATATTCGTTAGCGGTGGGCCTGGGCTGTTACACATGGTATTAGAGCTAGACACCGGGCGATGTGTCAATGAGGAGGTTGAGCCTTGAAGGGGGTGGATACGAGGCGGTATGTCAGCAAGGACGTTGGGCCCCGAAAAGGGGTGGATTATGATATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTCTCCCTAGCAGACTCGTTTTAAAAACCTTAAGAGGGAGCCCAAAAGGGAAAACTCAAAGAGGACAATATCTACTGGACGTAAGCTGCTACAAATGGTATTAGAGCACGGGCAATATGTCAATGAGGAGGTTGAGTCCCGAAGGGGGTGGACACGAGGCAGTGTGCCAACAAGGACGCTGGGCCCTGAAAGAAGGTGGATTGGGGAGTCCCACGTCGATTGGAGAAGAGAATGAGTGTCAGCAAGGACGTGGGCCCCGAAGGGGGGTGAACTATGATATCTCACGTCAGTTGGGGAGGAAAACAAAACATTCTTTATAGGGGTGTGGAAACCTTTTCGTATCATACACATTTTAAAAACTTTGAAGGGAAGCCCGAAAGAAAAAGTCGTTCAAAGAGGACAATATCTACTAGCGTTAGACTTAAACTAGTTAAGGAGTGTTCATGGGTTGGATTTCGTCGGGATTAGAACATTTTTTGACGGTCGAAAATCACTTCTTGCAGAAAACAATGAGTAATCCAGCCACAATATCAAGGGCTTTGAAGTATATACCTGAGCTAAGACAGCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGTTAAGACCATTTCTACCTTTCAGTCGTTCGATGGGAGGCACTTCTTTACTTTGCTCGTTCAGGTATAATTTAATATTTTTTCTATACAAATGTTCGTGGGTTGGATCGGGTCGGGTCGGATTATAATATTTTTCCGACCCAATCTAATTGTTTGAGTTGTGAATTTGTGAGATCTCACATCAGTAGGAGAGGGAAATAAAACATTCTTTGCAAGGTGTAGAAACCTCTTCATAATAGACCCGTTTTAAAACATCGAAGGAAAGCCCTATTCTCGGGTTCGTAATAACTAAAAATATTTAAGAAAACGGAGATATTTTATTTGTTTATTTAAAGTTTTAAGCCTTAATATATAATTTGATTTGATTTGATTTTATGTTTAATGCAGGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHSLDEEELLAKPNTPSRVLQEILNRKF
BLAST of Carg12686 vs. NCBI nr
Match: XP_022925194.1 (transcription factor bHLH101-like [Cucurbita moschata]) HSP 1 Score: 258.8 bits (660), Expect = 1.1e-65 Identity = 144/226 (63.72%), Postives = 149/226 (65.93%), Query Frame = 0
BLAST of Carg12686 vs. NCBI nr
Match: XP_022966445.1 (transcription factor bHLH101-like [Cucurbita maxima]) HSP 1 Score: 243.8 bits (621), Expect = 3.7e-61 Identity = 138/226 (61.06%), Postives = 144/226 (63.72%), Query Frame = 0
BLAST of Carg12686 vs. NCBI nr
Match: XP_023518049.1 (transcription factor bHLH101-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49 Identity = 126/226 (55.75%), Postives = 133/226 (58.85%), Query Frame = 0
BLAST of Carg12686 vs. NCBI nr
Match: KGN54725.1 (hypothetical protein Csa_4G434980 [Cucumis sativus]) HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13 Identity = 57/117 (48.72%), Postives = 68/117 (58.12%), Query Frame = 0
BLAST of Carg12686 vs. NCBI nr
Match: XP_004144366.2 (PREDICTED: transcription factor bHLH101-like [Cucumis sativus]) HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12 Identity = 77/209 (36.84%), Postives = 92/209 (44.02%), Query Frame = 0
BLAST of Carg12686 vs. TrEMBL
Match: tr|A0A0A0KYH3|A0A0A0KYH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G434980 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13 Identity = 57/117 (48.72%), Postives = 68/117 (58.12%), Query Frame = 0
BLAST of Carg12686 vs. TrEMBL
Match: tr|A0A1S3C1M0|A0A1S3C1M0_CUCME (transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11 Identity = 54/117 (46.15%), Postives = 67/117 (57.26%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|