Carg12679 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12679
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_021 : 572664 .. 578258 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTGAGCCACACCTGCGGCGGCTATATATCTCCCTCGCGACACCGCCCGCGGCAGCCAGCACCGCTCGACGGCGACACACTCACGACGACAACTTCTGGGTTGCGACTTCGCTGCATCGGCAAGATCTGTAACTTCAAGACCTTTATGCGGTGATCGAGACCTACAGTGACTACCTGGTGCGCTAGCTCCCCTTGTGTGATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGTAAGAATCTAAGCGATTCAGGTGGTATAGATTCGTGATTAAACTATTATCAATGAGTTTTAATCTTGGAATATCATGTTTGTGATATGTTTGTATATGATTTATTGACCTCTTCTACTAATTTGAATATAGACTTGATGCATTAGCATGCTAAAGATTTGTGAGATTGAGTTAAAAGCATGGTGCTTCGAATGTTTGTAAAAGTTCATGCCATGTACGCTCATGCTTCATTTCTGTTTATGAGAAAACTGTGATAGTGTTGTTAATGTATTAAGGCTAAGGAAGTAAGACTTGTTAAGGTAGGTAGTAGGGCGCCTGGTAAACAGGATTGGGGATTGACATGTCTGAATCTATAAGGGTGAGTATTAGGGTCTTGAGTATAAATTGTCATGGGTCAGTGCGTTGTGAGGTATTGAGCTAAATGTCATGGTTTTTGGTAGAAAGGGGCAAGGGCTAATTTGGCTAGGTTTGAATTGTGAGATCCCATATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAGACGCTTTTTAAAAACCTCGAGGGGAAGTCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATACTTGTTAAAAATAATTAAGGGCCAATGGGTTGGGAGGTGAAGAGCTATGTGTTGGAACATTAGAGATAACTGTTGGGGCCTTAGGTAGAAATGGTGGGCAAATGAGATAGAGAGAATGTGTGATTATGAAGCCAATAAGGTGTTGATGTACTTGGGTGTGTAATTATGTGAATTTTATTACTAGAGTTAGAACTAAAGGTTGATGGGGAAGGGAAGGAAAGGTTAAGAAATAATTGGAAATGGGAGTCTTTTATAGAGGTACATGAAGTCTTGAAAAATTTGTACTCATTCTTTTCGATGTTAGATGTTAAACATAACATTGTGGAGAGATACTATGCGAGATCTCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAACCTTTCCCTAACAAACGCTTTTTAAAACCATGAGGCCGACGACGATACGTAACGAGCGAAAGCACTAGCGGTGAGTTTGGGCTGTTACAAAATGGTATCAGAGTTAGACACCGGGCAGTGTGCCAGCGATGACACTAGGCCCCGAAGGGGGGTAGATTGTGAGATCCCACATCGGTTGGAGAGGGGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAACTATGAGGCCGACAGCGATACGTAACGGGCCAAAGCGGATGATATCTACTAGCGGTGGGCTTGGGCTGTTACATACTATGATCATTGCCAAATAAAAGTAATTCAATTTTCGAGTTTTCTTTTAGAATATTACATTACATGTGAAAATGGAGATTCAAACTTACAACTTCATATATCGAAGTGAAGATGCCTTTAACTGTTGTTCTATAAAAGAAATCTAGTGTTGGGGAGAGAAGAATGTAGATAAGTGGATAAGTGAAGTAACATTGGGCCATTAATTATTGATGAACATAAAACTGGAATGAAAATTAATGCATAGTAGACGAGAAGTAAGAATTTGACCTTGACTATACTTCATTATTTTCGATTTCCTGAGTAGATACATAATACCTTAACCAAATGAGAGAAGCTCAGGTTAACTTCTTTCTCGTATTTTATAATATGGAATAACTGTGTTATCAGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGTCTTGTGCCTTCATTCTAAATTTACTTATATTTTCTTGAACTGCACCCGAGTCTCGCTTTAATCTGTATTTCCGTATGCATATTGCAGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGGTATTATTCTTTATTCAAACATCACCACGAACTCATTGTTTTCTATCATCTAGAAAATTGTAACTTGTCGTAATCTTGTTCGCTTTCCTGTTGGAATGTTTTGGACATCTCTTAGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGGTAATATACCCCGCCTTTCGATAAATCCAACAAATACAATACGAGTTGTTATGTTCGTCGTTTTCTTGTATCAAGTAATAGCTCATATTTTTTAATGTCAACGCAGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGTACTTTTGATTCTTTGATTTCTAGTCTTTCTTTTGATGTGATAGAAGATTTAGTAGTTTGTACAATATTAGCTAATAGCAACATTGCTGAGGTTTCTTCCAAATTTCTGAAAGGTCTTAGGAACACATTCTGAAAATTAAGATTGTCAATCATGCTATTCACCAAAAATCTTATACTTCTGTTGTCCATTAGCATAAACCTATTTGTGTGATCCCACGTCGGTTGGAGAGAGGAATGAAACATTTCTTATAAGGGTGTGAAACCTCTCCCTAGTAGACGCGTTAAAAAACATTGAGGGGAAGCCTGGAAAGGGAAGCCCAAAGAGGATAATATCTGCTAGCGGTGGGTTTGAGTTGTTACAAATGGTATCAGAGCCAGACACTGGGCGCTGACGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCTCATATTGGTTGGAGAGGGAACGAAACATTTCTTATAAGGGTGTGAAACCTCTCCCTAGTAGACGCATTAGAAAACCTTAAGGGGAAGCCTAGAAAGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGTTTGGGTTGTTACAAATGGTATCAGAGCTAGGCTCCGGGCACTGTCCAGCAAGGACGCTGAGCCCTCAAGGGGGTGGATTGTGAGATCTCATATTGGTTGGAGAGGGAACGAAACATTTCTTACAAGGGTGTGAAAACCTCTCCCTAGTAGACGTGTTTTAAAATTGTGAGGCTGACGGCGATACGTAATGGGCTAAAACGGACAATATCTGCTGTGGAAAATAAATACCTTAAAAACATCTAAAGGGAACGTGTAACTGCTTCTACAAACCATGGTGGTCACTAGAGACTACAACATTGTTAGGTTCTTGAGTGAAATCTTTGTCGATGGTTTTGCAAAATTTTGATATGCCACCGATCAAGTTTACACGCACTAAAGAGTGAAAGGACCGAAAGTGGCCCAAAACATGGAGGCCTAATTATAGTTAGAAAAGGGAGTTGCGTGATCATTCCTTTTGATGGGAGTTGCTTTGGCTTGGTTTTGATGGGAGATTGATGGACATCATTGAAGGGCTTGGTCTATATATAAAGCTGGAAGATTGTAATAGTCCAAGTCCATGGAAGATTGTAATAGTCCAAGTCCATCGCTAGCCGATATTGTCCTCTTTGAGTTTTTCCTTCTAGGCTTCCCTTCACGGTTTTGAAACGCGTTCACTAGGGAGAGGTTTCTATACTCTTACGAGGAATGCTTCGTTCCCCCTCTCCAGCTGATGTGAGATTTCACAATCCACACTCCTCTGGAGGCCCAACGTCCTTGTTGGCACACCGCGTGGTGTCTGACTTTGATACCATTTGTAACAGTCCAAGCCTACCGCTAGCGGATATTGTCTTCTTTGGGCTTTTCCTTCCGGGCTTCCCTTCAAGGTTTTAAAATGCGTCCACTAGGGAGAAGTTTCCACATCCTTATAAGGAATGTGTCGTTCCCCTCTCCAACCGAAATGTTGTTGGTGAAAAGGAGGGTCTTTTGGTGTGGATCAATGGCCTTCCTGACCCTTCTCTTGTTAATGAGTTTCCTGATGTCCTAATGGCTCCTTAGCCAAGCTAGAAAAGCATCTAACAAACTCTATTAAGATTCACGAAGGAATGTGCGCATTTTTTCAATAGCTGTTATGATGTGAAGCCTATTCTTGGAGGAGTGTTTTAAATAGAATGTTCATATTTCTCTATCATTGGGTTGCCTCTTAGGAAGCATATCTTTTATCCTGAACATGATTGTCACTTTTCACTAGGAGGAAAATACATGATGTTCAAAGAAACCTTCGAACTCTCTTGCATCGTACCCATACGCATATTTGCTAGCTATGTTTTTTCGCCTCACGAGTTCATGACCTTTGAAAACTCTCCAAAGCCAATTCGAAGAAGACTGACACTTCTAAATGGTACTGTGAGATCTCACATTGGTTGGAGAGGGGAATGAAGCATTCCTTCTAAGGGTGTGGAAACCTCTCCCTAACAGACGCATTTTAAATTTGTGAGGTTGACGGCAATACGTAATGGGCCAAAACAGACAATATCTACTAGCGGTGGGCTTTGGTTGTTACAGTTCTAGAAAGAGTCAATCCATTATAGCTTGATATTTGATATAGAATAAGTCTCTCACTAGATAGCTAACGATGAAACCAAATTTGCTCGAGAAACTAAACAGTGATGAATGGGTCTTAAGACAGAAAATTTAATGTTCTAGTTCTCTCTCGAGTGGAAACATTATACCTCATTAGAGTTAATGATTACTGCAAATGTTGTCTCACTTGCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTTAGTTCTTTTATCCTTGTTTAATAACTGGAGCTGTTCTGTTCTTCTTTCTGCAAAAATGCTTCATAGAAATGCAAACACAATTGCTTTACCTTGTTAGGATGAGTAGCAATGATATGCAATGCCATTTTGTTAGCTTTGGAAACATGAACACATTTTGAGTATCAACTACTGCTCTGAAATTGGGTTAAAATACCATATTCATCTTTGTACTTCGAGCATCGAACGCATCGATCAAACTTTCAAATGTCCAAATTTAGTCGTAAAGGGGTCTGTGAAAGATGGTTTTAGGTACCAAAGTTGAGTTGATATTAAATGAATGCTTTGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAATTCAATATCAACTTTTTTCTTCATCTTATCATTCAGCCATGTCTTTTCAATCTTACCCATCTAGAATATATCAATACCATATATCGTTCGTATATCAACCGTTATTTTTTGATTCAGTGAGTAATATAACAAATAAAGTATATAGAAGACGAACACCTATCTTATAAGAAATGAAACTTTAGATATATT

mRNA sequence

AATATTGAGCCACACCTGCGGCGGCTATATATCTCCCTCGCGACACCGCCCGCGGCAGCCAGCACCGCTCGACGGCGACACACTCACGACGACAACTTCTGGGTTGCGACTTCGCTGCATCGGCAAGATCTGTAACTTCAAGACCTTTATGCGGTGATCGAGACCTACAGTGACTACCTGGTGCGCTAGCTCCCCTTGTGTGATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAATTCAATATCAACTTTTTTCTTCATCTTATCATTCAGCCATGTCTTTTCAATCTTACCCATCTAGAATATATCAATACCATATATCGTTCGTATATCAACCGTTATTTTTTGATTCAGTGAGTAATATAACAAATAAAGTATATAGAAGACGAACACCTATCTTATAAGAAATGAAACTTTAGATATATT

Coding sequence (CDS)

ATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAA

Protein sequence

MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM

Homology

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BLAST of Carg12679 vs. NCBI nr
Match: XP_022925022.1 (uncharacterized protein LOC111432392 [Cucurbita moschata] >XP_023517210.1 uncharacterized protein LOC111781045 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 3.0e-75
Identity = 152/172 (88.37%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

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BLAST of Carg12679 vs. NCBI nr
Match: XP_022966472.1 (uncharacterized protein LOC111466117 [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 149/172 (86.63%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSES+QQGKGDSNLI+KSN+RCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESKQQGKGDSNLINKSNIRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

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BLAST of Carg12679 vs. NCBI nr
Match: KGN54489.1 (hypothetical protein Csa_4G338930 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 117/160 (73.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 13  LGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGT 72
           LG S ++QQGKG +NL   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMI SAVGG 
Sbjct: 157 LGVSVNKQQGKGYNNLTRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMISSAVGGI 216

Query: 73  ASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSAC 132
           ASAFYGFN+VMPVVQRSVKGPMWLHFLIG                    APPVI+FSSAC
Sbjct: 217 ASAFYGFNNVMPVVQRSVKGPMWLHFLIG--------------------APPVIIFSSAC 276

Query: 133 AGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
           AGM GGAVPALAQL SSSYHS  S S+DDK  DSRSSS++
Sbjct: 277 AGMTGGAVPALAQLVSSSYHSLTSSSEDDKAQDSRSSSSL 296

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BLAST of Carg12679 vs. NCBI nr
Match: XP_022149788.1 (uncharacterized protein LOC111018136 isoform X1 [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 3.6e-52
Identity = 113/149 (75.84%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 14  GDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 73
           GDSES+ Q KGD NLI  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA
Sbjct: 33  GDSESKLQRKGDKNLIRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 92

Query: 74  SAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACA 133
           SAFYGFNHVMP+V+RSVKGPMWLHFLIG                    APPVIVFSSACA
Sbjct: 93  SAFYGFNHVMPIVRRSVKGPMWLHFLIG--------------------APPVIVFSSACA 152

Query: 134 GMAGGAVPALAQLFSSSYHSAMSPSKDDK 163
           GMAGG VPALAQLFS+SYHSA+  S   K
Sbjct: 153 GMAGGGVPALAQLFSTSYHSAVLTSSTFK 161

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BLAST of Carg12679 vs. NCBI nr
Match: XP_008455891.1 (PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_008455892.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_008455893.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_016901867.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_016901868.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_016901869.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_016901870.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_016901872.1 PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 111/141 (78.72%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 32  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVK 91
           SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN VMPVVQRSVK
Sbjct: 2   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNTVMPVVQRSVK 61

Query: 92  GPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSY 151
           GPMWLHFLIG                    APPVIVFSSACAGM GGAVPALAQL +SSY
Sbjct: 62  GPMWLHFLIG--------------------APPVIVFSSACAGMTGGAVPALAQLVASSY 121

Query: 152 HSAMSPSKDDKTHDSRSSSTM 173
           HS  S SKDDK+ DSRSSST+
Sbjct: 122 HSLTSSSKDDKSRDSRSSSTL 122

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BLAST of Carg12679 vs. TAIR10
Match: AT3G04040.1 (unknown protein)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-39
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC HCAGPL+K++ET+ WT+ P IRDSFSMIGSAVGGTASAF GF+HVMP+V++ +KGPM
Sbjct: 15  RCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKGPM 74

Query: 95  WLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSA 154
           WLHFL+G                    APPVIV SSACAG+AGGAVPALAQL SSSYH+A
Sbjct: 75  WLHFLVG--------------------APPVIVVSSACAGLAGGAVPALAQLASSSYHAA 134

Query: 155 MSPSKDDKTHDS---RSSSTM 173
           +  S+  +  D     +SST+
Sbjct: 135 VHSSQPPQGQDKNQLHNSSTI 135

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BLAST of Carg12679 vs. TAIR10
Match: AT5G18250.1 (unknown protein)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-38
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 34  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGP 93
           +RC HCAGPL++++ETS WT+ P IRDSFSMIGSAVGGTASAF GFNH MP+V++ +KGP
Sbjct: 10  IRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGP 69

Query: 94  MWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSY-- 153
           MWLHFL+G                    APPVIV SSACAG+AGG VPALAQL SSSY  
Sbjct: 70  MWLHFLVG--------------------APPVIVLSSACAGLAGGTVPALAQLASSSYRA 129

Query: 154 --HSAMSP--SKDDKTHDSRSS 170
             HS+  P   KD+K   S +S
Sbjct: 130 AVHSSQPPQAQKDNKMQKSTTS 131

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BLAST of Carg12679 vs. TAIR10
Match: AT2G41945.3 (unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G  
Sbjct: 30  RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSK 89

Query: 95  WLHFLIGVSTLLL------------------SIVIIMNCSKIYFQAPPVIVFSSACAGMA 154
            L FL+GV  LL+                   IV +   S+   Q        S    + 
Sbjct: 90  RLSFLVGVPLLLVYSGVGAAFGESLQAAISFPIVWLEYESRCAAQCRIATFTFSLLFDVP 149

Query: 155 GGAVPALAQLFSSSYHSAMSPS 159
           G A+P  AQL  +SY+++ S S
Sbjct: 150 GYALPKFAQLTVTSYYASSSAS 171

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BLAST of Carg12679 vs. TrEMBL
Match: tr|A0A0A0L0B0|A0A0A0L0B0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338930 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.8e-53
Identity = 117/160 (73.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 13  LGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGT 72
           LG S ++QQGKG +NL   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMI SAVGG 
Sbjct: 157 LGVSVNKQQGKGYNNLTRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMISSAVGGI 216

Query: 73  ASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSAC 132
           ASAFYGFN+VMPVVQRSVKGPMWLHFLIG                    APPVI+FSSAC
Sbjct: 217 ASAFYGFNNVMPVVQRSVKGPMWLHFLIG--------------------APPVIIFSSAC 276

Query: 133 AGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
           AGM GGAVPALAQL SSSYHS  S S+DDK  DSRSSS++
Sbjct: 277 AGMTGGAVPALAQLVSSSYHSLTSSSEDDKAQDSRSSSSL 296

[Close]

BLAST of Carg12679 vs. TrEMBL
Match: tr|A0A1S4E0V5|A0A1S4E0V5_CUCME (uncharacterized protein LOC103495968 OS=Cucumis melo OX=3656 GN=LOC103495968 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50
Identity = 111/141 (78.72%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 32  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVK 91
           SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN VMPVVQRSVK
Sbjct: 2   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNTVMPVVQRSVK 61

Query: 92  GPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSY 151
           GPMWLHFLIG                    APPVIVFSSACAGM GGAVPALAQL +SSY
Sbjct: 62  GPMWLHFLIG--------------------APPVIVFSSACAGMTGGAVPALAQLVASSY 121

Query: 152 HSAMSPSKDDKTHDSRSSSTM 173
           HS  S SKDDK+ DSRSSST+
Sbjct: 122 HSLTSSSKDDKSRDSRSSSTL 122

[Close]

BLAST of Carg12679 vs. TrEMBL
Match: tr|A0A2N9GCJ2|A0A2N9GCJ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24981 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.7e-46
Identity = 103/146 (70.55%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 33  NMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKG 92
           NMRC HCAGPL+KDMETS WT+PPLIRDSFSMIGSAVGGT SAFYGFNHVMP V+R VKG
Sbjct: 11  NMRCHHCAGPLTKDMETSDWTVPPLIRDSFSMIGSAVGGTTSAFYGFNHVMPRVRRWVKG 70

Query: 93  PMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYH 152
           PMWLHFLIG                    APPVIVFSSACAG+AGGAVPALAQL SSSYH
Sbjct: 71  PMWLHFLIG--------------------APPVIVFSSACAGLAGGAVPALAQLASSSYH 130

Query: 153 SAMS------PSKDDKTHDSRSSSTM 173
           + +S      PS+DDK H SR+SSTM
Sbjct: 131 AVVSSPSLPPPSQDDKMHKSRTSSTM 136

[Close]

BLAST of Carg12679 vs. TrEMBL
Match: tr|A0A2P4LSU9|A0A2P4LSU9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66379 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 102/149 (68.46%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 30  SKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRS 89
           S  +MRC HCAGPLSKDMETS WT+PPLIRDSFSMIGSAVGGT SAFYGFNHVMP V+R 
Sbjct: 7   STIDMRCHHCAGPLSKDMETSEWTVPPLIRDSFSMIGSAVGGTTSAFYGFNHVMPKVRRC 66

Query: 90  VKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSS 149
           VKGPMWLHFLIG                    APPVIVFSSACAG+AGGAVPA+AQL SS
Sbjct: 67  VKGPMWLHFLIG--------------------APPVIVFSSACAGLAGGAVPAIAQLASS 126

Query: 150 SYHSAMS------PSKDDKTHDSRSSSTM 173
           SYH+ +S      PS+DDK H SR+SST+
Sbjct: 127 SYHAVVSSPSVPAPSQDDKMHKSRTSSTL 135

[Close]

BLAST of Carg12679 vs. TrEMBL
Match: tr|I3STH5|I3STH5_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.8e-45
Identity = 101/145 (69.66%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 30  SKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRS 89
           SK+++RC HCAGPLSK+METS WTI PL+RDSFSMIGSAVGGT SAFYGFNHVMPVV+R 
Sbjct: 9   SKNDLRCHHCAGPLSKEMETSDWTIAPLVRDSFSMIGSAVGGTTSAFYGFNHVMPVVRRY 68

Query: 90  VKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSS 149
           VKGPMWLHFLIG                     PPVIVFSSACAG+AGGAVPALAQL SS
Sbjct: 69  VKGPMWLHFLIG--------------------TPPVIVFSSACAGLAGGAVPALAQLVSS 128

Query: 150 SYHSAMS--PSKDDKTHDSRSSSTM 173
           SYH+ +S  PSKDDK   SR+SST+
Sbjct: 129 SYHATLSSPPSKDDKIQKSRTSSTL 133

The following BLAST results are available for this feature:

BLAST of Carg12679 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925022.1	3.0e-75	88.37	uncharacterized protein LOC111432392 [Cucurbita moschata] >XP_023517210.1 unchar...	[more]
XP_022966472.1	5.7e-74	86.63	uncharacterized protein LOC111466117 [Cucurbita maxima]	[more]
KGN54489.1	4.2e-53	73.13	hypothetical protein Csa_4G338930 [Cucumis sativus]	[more]
XP_022149788.1	3.6e-52	75.84	uncharacterized protein LOC111018136 isoform X1 [Momordica charantia]	[more]
XP_008455891.1	2.6e-50	78.72	PREDICTED: uncharacterized protein LOC103495968 [Cucumis melo] >XP_008455892.1 P...	[more]

BLAST of Carg12679 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04040.1	3.2e-39	59.57	unknown protein	[more]
AT5G18250.1	2.1e-38	59.15	unknown protein	[more]
AT2G41945.3	1.7e-08	30.28	unknown protein	[more]

BLAST of Carg12679 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12679 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0B0\|A0A0A0L0B0_CUCSA	2.8e-53	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338930 PE=4 SV=1	[more]
tr\|A0A1S4E0V5\|A0A1S4E0V5_CUCME	1.7e-50	78.72	uncharacterized protein LOC103495968 OS=Cucumis melo OX=3656 GN=LOC103495968 PE=...	[more]
tr\|A0A2N9GCJ2\|A0A2N9GCJ2_FAGSY	9.7e-46	70.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24981 PE=4 SV=1	[more]
tr\|A0A2P4LSU9\|A0A2P4LSU9_QUESU	2.8e-45	68.46	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66379 PE=4 SV=1	[more]
tr\|I3STH5\|I3STH5_LOTJA	4.8e-45	69.66	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12679-RA	Carg12679-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 172..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..172
None	No IPR available	PANTHER	PTHR34459:SF1	SUBFAMILY NOT NAMED	coord: 120..163
None	No IPR available	PANTHER	PTHR34459	FAMILY NOT NAMED	coord: 29..107 coord: 120..163
None	No IPR available	PANTHER	PTHR34459:SF1	SUBFAMILY NOT NAMED	coord: 29..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12679	CmaCh07G012470	Cucurbita maxima (Rimu)	carcmaB0398
Carg12679	CmoCh07G012920	Cucurbita moschata (Rifu)	carcmoB0395
Carg12679	Lsi01G020120	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12679	Cp4.1LG19g01260	Cucurbita pepo (Zucchini)	carcpeB0400

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12679	Cucumber (Chinese Long) v3	carcucB0314
Carg12679	Cucumber (Chinese Long) v3	carcucB0319
Carg12679	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12679	Melon (DHL92) v3.5.1	carmeB0282
Carg12679	Melon (DHL92) v3.5.1	carmeB0286
Carg12679	Melon (DHL92) v3.5.1	carmeB0287
Carg12679	Melon (DHL92) v3.6.1	carmedB0294
Carg12679	Melon (DHL92) v3.6.1	carmedB0297
Carg12679	Melon (DHL92) v3.6.1	carmedB0298
Carg12679	Watermelon (Charleston Gray)	carwcgB0273
Carg12679	Watermelon (Charleston Gray)	carwcgB0276
Carg12679	Watermelon (97103) v1	carwmB0272
Carg12679	Watermelon (97103) v1	carwmB0277
Carg12679	Watermelon (97103) v2	carwmbB0292
Carg12679	Wax gourd	carwgoB0374
Carg12679	Cucumber (Gy14) v2	carcgybB0297
Carg12679	Cucumber (Gy14) v2	carcgybB0301
Carg12679	Wild cucumber (PI 183967)	carcpiB0313
Carg12679	Wild cucumber (PI 183967)	carcpiB0315
Carg12679	Wild cucumber (PI 183967)	carcpiB0319
Carg12679	Cucumber (Chinese Long) v2	carcuB0308
Carg12679	Cucumber (Chinese Long) v2	carcuB0309