Carg12664 (gene) Silver-seed gourd

Overview
NameCarg12664
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_021 : 467298 .. 472065 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGATGGTTTGATCATGTGAAACCGGCTCCTAAGGATCCGATCTTCGGTGCTACGGAGGCTTTCATGGCCGATCCATGCACGAACAAAATCAACCTTGGAGTGGTAATGATTAAACTCTGTTTTTTTATTGTTTTCTTTTGAATTCGTGGAAAGTTTTCGTGTTTTTGGTTTTTGAATTATTTACTTTGGAAGGGAGCTTATCGGATCGATTAGGGGGAACCGGTTGTGCTTCTATGTCTTGGAGATGCTGAATCGAAGATTGCCAGTAGTGAGTTCTTGTAAGTTCCAATGCTTAGTTTCCTGCTGAGTCCTGCATTCCATGCTTTCGAATTTTAGAGAGTAAATTTCTGCTGCGGTGAGTTCAATATTTGTGGATGAGTGTGTTGAGTTGATTTATGGAAAGGATTCAAGTGTTACAAAGGAAAGGAGATTTTCTGGAGTTCAGGCACTTTCTGGGACTGGAACGTGCCGACTGCTTGCTGAATTTCAGAGCCATTTCCATCCTGATGTTCCAATGTTCTTGCCCGAACCAACTTGGTCTAAGTAAGTTTCCACTTGCTTTAAGTATTTTTGCAAACATACACTCGGGTAACAGAGAAAACGCATACCTAGTTTAGATCACTGTTATAAATAATTTGTAAAAATCAATGAAAAAGAACCACGAAGCTCTTAGAATGTTTTAAGGATATGATCTTGATAAATGTTTTTTCCTACCATGGCGAGTGAAACTTTCTGCTCTGGTACTAGTATAGGAACCACGAACCTCTTAGAATGTTTTAAGGCTATGTATGATCTTGATGAATGTTTTTTCCTACAATGGCGAGTGAAACTTTCTGCTCTGATACAAGCATAGGAACCACGAATGTCTACAGTGGTATGATATTGTCCACTTTGAGTATAAGATTTAATGACTTTACTTTTGGTTTTTCCAAAATGCCTCGTACCAATGGAGATGTATTTCTTACTTATAAACTCGTGATCATTCTCTTAATTAGCCACCGTGGGACTCAGCTCCCAACAATCTCAACTGTCAGTCATTATTTGATTTAAAATTCCCCAGAATGTTTTTTCTTTTTGCTCCATTCTTGTGCTCACAACCTAACACATGAACAATGGCTAGAAATTTCAAATCAATTAATGGTAGTTGCAAATAATTTGATGTTACACATTAACATTGCATGATGATGGAGTTGATGCGACTTAACTCCAACTTTTCCTTCCAGGTGACACATCACTTTCCCTTTGTTTGACATGGCGTATCAAGGATTTGCCAGTGGAGGTCTTGAAGGGACGCCAAAGTTATACGGCTGTTTCTTGAAGATGGATATATGGTAGGTTGTGCTCAATTCATATGCGAAGAATATGGGTTTATATGGACACAGGGTTGGTTGTCTAAGGTCAGTATCTACTAGCTGAACTCTAGATTGCTATCAATAGGGAAATATTGTGTAGTGTGAAGTAATTGTCTTGCGTTTAATCGAAGTGTTGCAGTACTTTAAATCTTAATTGGGTTTCTTAGTTACTAGACAGGGGTCAGCATGGTCTTATTTTTCTTACTTTATGATTGTGTTGCAGTACTTTAAATCTTGATCTCTGCCTCTTGCCTGCTTTGTATTCTGACATTACATCCATTTGTTCAACTTTTCCCCCATTTTCTAGTGTTCTTGGCAAAGATCAACAGCAAGCCATGATAGTAAGATCTCAGCTTCAGTGACTGGCCAGGGCAATGTATAGCAGCCCTCCCATTCGTCTGAAGCCTGAATGGATTGAAGAACCGAAGGTAATGGATGAATATTTTGTAAAGTCTCTTCTTCATTTCTGGGAGGATATAGATCGTGAGATCCCACGTCCGTTGGAGAAGAGAACAAAGCATTTCTTATAAGAGTGTGACCCTAATAGACGCGTTTTAAAATCGTGAGACTGACGACGATACTTAACGAGTCAAATCAGACAATATCTGCTAGCAATGGGTTTGAGCCGCTACAAATGGTATCAAAGCTAAACACCAGTGTGACAACGAGGACGTTGGCCTTCAAAGGGGATGGATTGCGAGATCCCATATCAGTTGGAGAGAGGAACGAAACATTCCTTATGATGGTGTGGAAACCTATCCCTAGTAGATGCGTTTTAAAACCGTGAACCTGACGACGATATGTAACGGGTCAAAGCGGACAATATTTGCTAGTGGTGAGCTTGGGCTGTTACAAATGGTATCAGAGCCAAACACCGAACAGTGTGCTAGTGAGGATGCTGGGTGTCACGGTCCTACATTTTTTACCGTGCGACGTCGTGATCTTGTCACGCTCACGACTAGCCTTGAGGGGAATTAAGCCCCATATATATTTTTCTATCCGGCTTTGCGGCTTCGTCAGACCTTAGGTGAGGTTTGTCTTCGCCAATCGAACATCGCTTGTGCGGAATCCAAGCTTGTTCAACCACACACGCCGCCTGTGCGTGCATGTTCAATCGTCTACGACACATCCGACTTGCCTCTACACTAGGCCAACTCATTCGACTCGACCTTGCCTCTACTCGGGCCAAGCTCTCTCAATACAATGTCCATCTCCTCTTGCCATTTCGATCCCCATCGACAGGGTAGGGTCCATATGTCTTGATGCCATCCCGAGTCTCGGGATGTCGTCGGCCATCATAACTCATTCGGTCATGCCATCGAGAATGGGCCCGCGTGTCGTTCATCTCATCGGGACTTCTCGAACATCCATTCATCTGGATCCTATTGAGGCATAGACCCTCCTGTGCCCATGCCGAGTCATTTACCGATACCGTACCGGATAGCGAGTGTATGTAGCAACCTCCAACACGCGGGCTAGGCGCAATACCGGTACACCTGTGTCGTCTCGAACATCCATTCATCTGGATCCTATCGAGGCATAGGCCCTCCTGTGCCCATGCCAAGTCATTTACCGATACCGTACCGGATAGCGAGTGTATGTAGCAACCTCCAACACGCGGGCTAGGCGCAATACCAGCACACCTGTGCCGTCTGGTAATGTCCTTCAAAAACCCATTTCAAAGGAAGTCGCTCGAGACACCCGTCTCGGCACGCTTGCCCACACTGTGACACACGTATGTGCCACAGGGTAACTCACTTAGGCCACAGGGCCTAGGGGTAGTGGAGAGCTAACAACATGGTACCTATATAGCTCACTTAGGCCACAGGGGCTAGGGGTGGTGGAGAGCTAACACCATGTTACCCCTATATAGTACATTTTGAGCCATTTTCATTCTACCAGGGTTTAGACATGATTTTGGTGAGTTATCATACGGTGTCGTGCATTGTCCGTCCGATGTCCGATTGACACCAAACTTGGCGAGCATTCATATTTCATATGGACGGACTTAACTCCAGAACCGCATGCCCAAATTCCTTCCGAAACCCCGACTTTTGAGGTTAAGGCCCGGGGCCCTACCCGGCCCTTCAACAAGCCTATCTTGTCCTTCATGTCTATTCTGATGTCTCTGTCTTGTTTGTCTCAACTTGTCTTCAATGCCCACTTTGCGTGGTGGTGTGTTGGATGATGCATCGTCCTCCTCAATCGCATCATGACACTCTTCTATATTGGCCCGCATATGGCCGGATGGGCGTCTCTTGAGGGACGCCACTTTGCTTGTCATGGCGTGAGGATCACAACCTACTCTCTCCATAGTATGGTTGTGACACTGGGCCCCCAAGGAGGTGGATTGTGAGATCCCACATCAGTTGTAGAGGGGAATGAAACATTCCTTGTTGTGACACTGGGCCCCCAAGGAGGTGGATTGTGAGATCCCACATCAGTTGTAGAGGGGAATGAAACATTCCTTATAAGGGTGTGGAAACCACTCCCTAGTAGACGTGTTTTTATAACCATGAGGCTGACGACGATACGTAACGAGTCAAAGCAAACAATATTTGCTAGCGGTGGGCTTAGGTTGTTACAAATAATATCGGAGCCAGACAACGGACGGTGTGCCAATGAGGACGCTGGGCCCCCAAGGGGGTGGATTGTGAGATTCCACATGAGTTCGAGAAGAGAACAAAACCTTTCATATAAGGGTATGGAAACCTCTCCCTAGTAGAGACATTTTAAAATCGTGAGGCTGATGGCGATACATAACAGGTCAAAGTGAACAATATTTACTAGCGGTGGGCTTGGGCTGTTATATAAATTCTGATGTGTTTTTTACCCTCCTACATTTTAAGGTTTTTGGTTAATCGCATTCGATCTATTAGAGCTAGTTTTTTTGATAATCTTGAGAAATTGAATGCTCCTCTCAATCGTGATCACATAGTGAGTTATGGTACTAAGAATTTGGCTAAGTTGCATTTTTGTTCCCCAATATCTTATCATTGAATCCAGCAATTATTATTGGTTGCATTCCAGCTCTTTGGATTTCTTTCCAGCTAAACTTTAAGTCCTGTCACATGTCCATATTTTCAATCAGTATGAATTCTTTGACGCATGTTTCATATCATTAAAATGACGCATGTTTCATATCATTAAAATGTCCATATTTTCAATCAGTATGAATTCTTTGACGCATATTTCATATCATTAAAATAAGATTATATCACGAAATTCATATGGCACATACAACACTAATGACTGAGTGGAAAAAATTGTGATAAAGCTGTTTAATATTTGTTTATTTACCAATTGTGACAGATGCAGGTCGGAATGGTTTGCTATTCTGGTTTGAACTGTGAGCAGATTGATCTGCTGGCTAGAGATTTTGGTGGTACATATGAACAGGGATGGGCGTGTGAG

mRNA sequence

TCGGATGGTTTGATCATGTGAAACCGGCTCCTAAGGATCCGATCTTCGGTGCTACGGAGGCTTTCATGGCCGATCCATGCACGAACAAAATCAACCTTGGAGTGGGAGCTTATCGGATCGATTAGGGGGAACCGGTTGTGCTTCTATGTCTTGGAGATGCTGAATCGAAGATTGCCAGTAGTGAGTTCTTGATTCAAGTGTTACAAAGGAAAGGAGATTTTCTGGAGTTCAGGCACTTTCTGGGACTGGAACGTGCCGACTGCTTGCTGAATTTCAGAGCCATTTCCATCCTGATGTTCCAATGTTCTTGCCCGAACCAACTTGGTCTAAGTGACACATCACTTTCCCTTTGTTTGACATGGCGTATCAAGGATTTGCCAGTGGAGGTCTTGAAGGGACGCCAAAGTTATACGGCTGTTTCTTGAAGATGGATATATGTACTTTAAATCTTGATCTCTGCCTCTTGCCTGCTTTGTATTCTGACATTACATCCATTTGTTCAACTTTTCCCCCATTTTCTAGTGTTCTTGGCAAAGATCAACAGCAAGCCATGATAATGCAGGTCGGAATGGTTTGCTATTCTGGTTTGAACTGTGAGCAGATTGATCTGCTGGCTAGAGATTTTGGTGGTACATATGAACAGGGATGGGCGTGTGAG

Coding sequence (CDS)

ATGGCGTATCAAGGATTTGCCAGTGGAGGTCTTGAAGGGACGCCAAAGTTATACGGCTGTTTCTTGAAGATGGATATATGTACTTTAAATCTTGATCTCTGCCTCTTGCCTGCTTTGTATTCTGACATTACATCCATTTGTTCAACTTTTCCCCCATTTTCTAGTGTTCTTGGCAAAGATCAACAGCAAGCCATGATAATGCAGGTCGGAATGGTTTGCTATTCTGGTTTGAACTGTGAGCAGATTGATCTGCTGGCTAGAGATTTTGGTGGTACATATGAACAGGGATGGGCGTGTGAG

Protein sequence

MAYQGFASGGLEGTPKLYGCFLKMDICTLNLDLCLLPALYSDITSICSTFPPFSSVLGKDQQQAMIMQVGMVCYSGLNCEQIDLLARDFGGTYEQGWACE
Homology
[Close]
BLAST of Carg12664 vs. NCBI nr
Match: XP_022966492.1 (aspartate aminotransferase, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022966493.1 aspartate aminotransferase, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022966494.1 aspartate aminotransferase, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05
Identity = 34/65 (52.31%), Postives = 35/65 (53.85%), Query Frame = 0 

Query: 55 SVLGKDQQQAMI-----------------------------MQVGMVCYSGLNCEQIDLL 91
          SVLGK QQQAMI                             MQVGMVCYSGLNC+QIDLL
Sbjct: 24 SVLGKVQQQAMIVRSQLQRLARAMYSSPLIRVKAEWIEELKMQVGMVCYSGLNCKQIDLL 83

[Close]
BLAST of Carg12664 vs. NCBI nr
Match: XP_022966496.1 (aspartate aminotransferase, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 32/63 (50.79%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 55 SVLGKDQQQAMI---------------------------MQVGMVCYSGLNCEQIDLLAR 91
          SVLGK QQQAMI                           ++VGMVCYSGLNC+QIDLLAR
Sbjct: 24 SVLGKVQQQAMIVRSQLQRLARAMYSSPLIRVKAEWIEELKVGMVCYSGLNCKQIDLLAR 83

The following BLAST results are available for this feature:
BLAST of Carg12664 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966492.17.3e-0552.31aspartate aminotransferase, mitochondrial-like isoform X1 [Cucurbita maxima] >XP... [more]
XP_022966496.12.8e-0450.79aspartate aminotransferase, mitochondrial-like isoform X2 [Cucurbita maxima][more]
BLAST of Carg12664 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg12664 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg12664 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12664-RACarg12664-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12664CmoCh07G012770Cucurbita moschata (Rifu)carcmoB0395
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12664Bottle gourd (USVL1VR-Ls)carlsiB258
Carg12664Bottle gourd (USVL1VR-Ls)carlsiB261
Carg12664Melon (DHL92) v3.5.1carmeB0282
Carg12664Melon (DHL92) v3.5.1carmeB0283
Carg12664Melon (DHL92) v3.6.1carmedB0294
Carg12664Melon (DHL92) v3.6.1carmedB0295
Carg12664Watermelon (Charleston Gray)carwcgB0273
Carg12664Watermelon (Charleston Gray)carwcgB0274
Carg12664Watermelon (97103) v1carwmB0272
Carg12664Watermelon (97103) v1carwmB0273
Carg12664Watermelon (97103) v2carwmbB0289
Carg12664Watermelon (97103) v2carwmbB0290
Carg12664Wax gourdcarwgoB0367
Carg12664Wax gourdcarwgoB0372
Carg12664Silver-seed gourdcarcarB021
Carg12664Silver-seed gourdcarcarB319
Carg12664Cucumber (Gy14) v2carcgybB0298
Carg12664Cucumber (Gy14) v1carcgyB0331
Carg12664Cucumber (Gy14) v1carcgyB0333
Carg12664Cucurbita maxima (Rimu)carcmaB0396
Carg12664Cucurbita maxima (Rimu)carcmaB0398
Carg12664Cucurbita moschata (Rifu)carcmoB0393
Carg12664Cucurbita pepo (Zucchini)carcpeB0399
Carg12664Cucurbita pepo (Zucchini)carcpeB0400
Carg12664Wild cucumber (PI 183967)carcpiB0313
Carg12664Wild cucumber (PI 183967)carcpiB0317
Carg12664Cucumber (Chinese Long) v2carcuB0308
Carg12664Cucumber (Chinese Long) v2carcuB0312
Carg12664Cucumber (Chinese Long) v3carcucB0312
Carg12664Cucumber (Chinese Long) v3carcucB0316