Carg12414 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12414
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Helicase, putative
Location	Cucurbita_argyrosperma_scaffold_074 : 820732 .. 825754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTAGATGCTGCAAGCACAGCCCTTGAACGTTTGAGTACCGCCGAAGCAGTGAAGTACCTGCAGTCACTGTCGGACGTTGGCTAAGTATCAAAACGGGGACGGATTGTGCCGCGCACTCGGCTCGATACGTTCCTTCCTCTGGAACCCGCCCAAATCTTCAGAATCTAATTTAGAGATAATTGTGCGTGGAAATTCAGAACCGCCGGGAAGAGTACGGAAGTTCGGTTGCAGAACTCTGATATGAAATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTGTAAGTAATTTTTTTTTCGTAGTGTAGCCCTTGTGTGGAAGCTTACAGTTAGTATGTGGCTGCATGCTGTTCATGGTTTTTTGCATTTCCGTTTAAAATTACTTTTAGGGTTTATCAATGTTATACCATTCTTCAGTTTTGAGTATTCGGTGTTTAGAATTTTTTTAATTTCGTGCTTATTGCAAGCCTGGTGTCACAATTTCACATAGCAGTTGAGGAGAAGATGATCTTCAGTTCTTATTGCATAAAGGTTGAGAATGGGATTGAAGCAGGGCTCATACTCCCTTTCTTCTGTTTTTATATTAGCTATTTCTCAAATTTTCTCTGCGGTGGAATTTCTTAATTTCTTAAGAATGTTTCCTGTCCCATGTATTTGTGTTTCTTTCCCTTCTCAAAGAAAGAGATGTTTCTTGCTAACCTAATTATTTGTAATTTTCCTTGTACCTGAAGGTTTGAATTCTTATCCTCACACTTGTAATGTTATTTTCTAAAAAATGCGACATTGCTTAATTACCACTAAGCATCAATTATGCACTGTGTTTATTTTTTATTTTTGGTTCAAATTCAGCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTACTGCTTGATTGTTCAATCTGCCATGCATGAAAAATGTTGGGTTAGCTATACTGAATTAAGATTGCTGCGATTATACATTTCATGCATTTACGTTAAGTCAGTGATCTCGGCTATATTTTCTCATGACTGATTTTCCAATTGGACTAATTTCACTTTCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGTAGTTTCTCTTATCATTGAGAAATGCCGAACAAAATTCTAACAAGAGAGAATGTATTGACTTTCCTTGTATTTATATTTCGCTATTTTTTTAACTTTCCCTGATTTTGTTCACAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGGTTTGTTTTAATACCTTGGTTTCCTTATAAAATGCTGAGCAGTGTTTTTGTTTATGGAGAATATATGTTGAAAACCCTCCTTAATAAGCATTGCTATTGGAGTTTTCCTGTTTCTTTCTGACCTATCTGCTAATATCACAGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTATTTGTAAACTGAAACACTATAAATTTAAATTGATGATGTCATCAACAAGAAGGTCTGTTTGGCACTAAAATTGACATACAAGATGCTACCATATTTGTACGTCAAGTCCATTTATTGAGTCTTGTTCAATATTGTTGGTTCTATTGATTTTCTTTTGGGTTGAATCAATTTCTTTCGCAATAAATTTGGTTTAAGTTTTTCCTTTTTGCCTTCAAACTTATTCCAAAAATATTAGAATGAATAAAACCAATTTCATTTTATGTCATTTGAGTCTGTGCATTGGAAAGTAACCTTCAATTTTTGGGTTGAAAATATTAGCCTATTGGGTGTAATGATTTTCAGTCAACATGTTGGCTTAGGAAAATTCATACACACAGCTTTTAAGACGGAAAATGAACTAACCAATATATTCTTGCTAGTTGCTAGTAGATGATTTGGGAGGTTGGTATGGTGGCGTGATTGAATCGTCTTGGAATATACTATTTCTGCAAGCACGAAACACTTGCATTAAGGAAAACTTTATTTAACGGGTGTATATTCTTTGAATGAAAGTATAGTTCTTGTTGTTTGACTCTCTTTCATTCTTTTGTTCTCTATTATTATGTTTGGAAAGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGTAAGTAATGGTTTCAATCAACTTTACTTTTGTGCTTTCTGTTCCTTTCTCTTTGTCACTGTTTTTTGCGGTGATTGATAAGCAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGGTAATTATTATTATTATTTTCTGAAGAAGATACAAATTTCATTTCTATTGTAAGATATAGTAAGAACGTATGAACAAAAGATGCAATTTACTATGATGTGAAGTTATGTATGAAAGCAATTTTGCTTATATTTCATTGAGTAAAAAACAGTAATATGTATGTAAAAGAACCTCAATCATAGGTCGATAAAAGTAACGATCAAGTAATTTGCCTATGTCTATAAATGGAAGGAGAAATACAGCTATACAAATGTACAAGGAAATAAATAAATGGTTAAAAATCACTTTTTGGTCCCTGAACCTTCATGAAAGCAATAATTTAGTCCATGAACTTTGATTTTAACAATTTAGTTCCTATACCTTCACTTTTGTAACAATTTAGTCTTGAACTTTAGTTTGTAACAATTTAGTCTTGAACTTTAGTATGTAACAATTAGTCACTCTAATTTTGTAATGATCTAGTCCCTATCTTGAAAATTATTGTTAAGATTTCTGAAATCTCTTATATAGGTAGGCCAATAAATTTATTAGGGATCCTATATGTCTATAAGCTACGAAGTCTAAATTGTTATACAATAAAAATCAACATTTAGTTTTGATGATTTTTCTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGCAAGGATTAAATTGTTACAAATTTGAAAGTATAAGGACTAAATTGTTATAATTTGAAAGTTCATGGACTAAATTAATGCTCTCACGAAAGTTTAAGGACTAAAAGTGTTCTCTAACCTAAATAAAACTTTAAGTTTTCATCTTGATTTTCTGCACTCCCCCAAGCTGGATGACATGCATTCCTTGCTTAGAAATCAGTACCAAGGGTTGTTTGATGTAATGCCATGGTCAATATGTCTGCAACTTGTTATTGGGAAGGCACATGTCTTACATTTATTTGTTATTCTTACTGTTCTCTCTAATGAAATGACAATCTATCTCAACAGCTTCATTTGAATACGATGCACTGGATTTTTTTTGCAATAGGAATGATAGATTTTATTATCACACATTAATTCTATGACACCTTCTGTCTGGCTATAACTCAGAAAGTAGGCATTGTAACCTAATTCCTTCATAAATTACTTGAGCTAATGATCTAAACTTAGCTTCAACACTACTTCAAACGCCAACTTGTTGCTCAATGCCACTAATTCCATCACATATAGATGCAAGACCTTAAAGTTGATTTGTATTAATGATAAAGATAATAGATATTAGTGAGGCATCATTTTCCTTCCATTCCTTCTGCCACCCAACATAATTCCATATTTTAAGTACCTGATTATCTATCTTTTGGTGGTGCTGTTGGTACTTGGTATTATTTACTTTATGTAGTTCTCATAGTAATTATGACCTAAAATTTTTATTTGAAAGAAAAAAGGTCAACCAAATTTTTTTATTAGTTGTCGAATGAATAATTCATTTCTATTATTGTCTTGTGGTCATTACAGGCTATATATCATCTTGAAAAAGGGGATTCTGTATTTGTTGCTGCACATACATCAGCTGGAAAGACTGTTGTTGCGGAGTATGCATTTGCGCTAGCCACTAAAGTATGAAACGTTACTTCCAATGTCACAAATACATATTTATGAACAACATAGTTGAGCCTAACACTGGTCCATGTACTCAAGTTTTTTTCATTTGTTTTCGAGCTTGCTTATACTATTATATTCTTAATGAATGCTAAGGTTTTATTTCTGATCTTAATGCCATACAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

mRNA sequence

TAATTTAGATGCTGCAAGCACAGCCCTTGAACGTTTGAGTACCGCCGAAGCAGTGAAGTACCTGCAGTCACTGTCGGACGTTGGCTAAGTATCAAAACGGGGACGGATTGTGCCGCGCACTCGGCTCGATACGTTCCTTCCTCTGGAACCCGCCCAAATCTTCAGAATCTAATTTAGAGATAATTGTGCGTGGAAATTCAGAACCGCCGGGAAGAGTACGGAAGTTCGGTTGCAGAACTCTGATATGAAATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

Coding sequence (CDS)

ATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

Protein sequence

MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGYIEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGTTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVDRILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVKELIMC

Homology

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022948672.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 868.6 bits (2243), Expect = 9.0e-249
Identity = 433/470 (92.13%), Postives = 435/470 (92.55%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022948673.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita moschata])

HSP 1 Score: 862.4 bits (2227), Expect = 6.5e-247
Identity = 432/470 (91.91%), Postives = 434/470 (92.34%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NL KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NL-KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_023522326.1 (DExH-box ATP-dependent RNA helicase DExH11-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 862.4 bits (2227), Expect = 6.5e-247
Identity = 430/470 (91.49%), Postives = 433/470 (92.13%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKV LDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVYLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVN+LEG SIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNQLEGYSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD GREKK++AWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGREKKEQAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022997907.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita maxima])

HSP 1 Score: 861.7 bits (2225), Expect = 1.1e-246
Identity = 430/470 (91.49%), Postives = 433/470 (92.13%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTV+RSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVDRSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFER KKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERTKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKE+SVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKELSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD G E+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGGEQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022997908.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita maxima])

HSP 1 Score: 855.5 bits (2209), Expect = 7.9e-245
Identity = 429/470 (91.28%), Postives = 432/470 (91.91%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTV+RSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVDRSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFER KKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERTKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NL KE+SVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NL-KELSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD G E+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGGEQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. TAIR10
Match: AT3G46960.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 530.8 bits (1366), Expect = 8.1e-151
Identity = 278/476 (58.40%), Postives = 325/476 (68.28%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           M+ +EA  EL FRVGFSGH GHLRVEP  T ER   + SLPDF+ PPAF KET E+IK +
Sbjct: 1   MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEE YL PRL+PD+FS EK   QWDFDWF   K+ L PS PRSVVVPTW LPF R K+D 
Sbjct: 61  IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKED- 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           T  G WEP SV+VD+SE     Q+SG  PR+ GP KDF+RGS+NNRPFRPGGL+DSQS +
Sbjct: 121 TENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           R+LP+  S+G+WVQE+LNGG AQ VPP  KQ LDLGDL  YP +W+VYED S    +  E
Sbjct: 181 RVLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVE--DGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           N  K +S+QFDDLFKKAWEE+    +E  D     ESPKAE+   E          ++  
Sbjct: 241 NSSK-LSIQFDDLFKKAWEEDTFSELEGDDHTAGSESPKAEA---EPDAKASISNEVSKG 300

Query: 301 LEK--SVLDEILSLDSGGLSLRSDQATDHGREK--KKEAWVVVGGREEISLHFHELVPDM 360
           LE   +VLDEILS  S   ++ S++A     +K  +KE W   G  ++I+  F+ELVPDM
Sbjct: 301 LETDVTVLDEILS--SAKTAIMSEEAVTGSSDKQLRKEGWATKGDSQDIADRFYELVPDM 360

Query: 361 ALDFPFELDTFQKE----------------------------------HCTRAVYTAPIK 420
           A++FPFELD FQKE                                  HCTRAVYTAPIK
Sbjct: 361 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 420

Query: 421 TISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           TISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 TISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. TAIR10
Match: AT1G59760.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-20
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 355 ALDFPFELDTFQKE---------------HCT-------------------RAVYTAPIK 414
           A DFPF LD+FQ E               H +                   R +YT+PIK
Sbjct: 61  AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120

Query: 415 TISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
            +SNQKYRDF  +F DVGL+TGDV++ P ASCL+MTTEILRSM Y+G++I+R++ W+
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWI 177

[Close]

BLAST of Carg12414 vs. TAIR10
Match: AT2G06990.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-19
Identity = 40/66 (60.61%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 372 RAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADII 431
           R +YT+P+K +SNQKYR+   +F DVGL+TGDV+L P ASCL+MTTEILR+MLYRG++++
Sbjct: 126 RVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEVL 185

Query: 432 RDIEWV 437
           +++ WV
Sbjct: 186 KEVAWV 191

[Close]

BLAST of Carg12414 vs. TAIR10
Match: AT1G70070.1 (DEAD/DEAH box helicase, putative)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 372 RAVYTAPIKTISNQKYRDF---CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYR 426
           R  YT P+K +SNQK+R+F    G  +VGLLTGD ++  +A  +IMTTEILR+MLY+
Sbjct: 199 RLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQ 255

[Close]

BLAST of Carg12414 vs. Swiss-Prot
Match: sp|F4JAA5|SKI2_ARATH (DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.5e-149
Identity = 278/476 (58.40%), Postives = 325/476 (68.28%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           M+ +EA  EL FRVGFSGH GHLRVEP  T ER   + SLPDF+ PPAF KET E+IK +
Sbjct: 1   MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEE YL PRL+PD+FS EK   QWDFDWF   K+ L PS PRSVVVPTW LPF R K+D 
Sbjct: 61  IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKED- 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           T  G WEP SV+VD+SE     Q+SG  PR+ GP KDF+RGS+NNRPFRPGGL+DSQS +
Sbjct: 121 TENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           R+LP+  S+G+WVQE+LNGG AQ VPP  KQ LDLGDL  YP +W+VYED S    +  E
Sbjct: 181 RVLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVE--DGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           N  K +S+QFDDLFKKAWEE+    +E  D     ESPKAE+   E          ++  
Sbjct: 241 NSSK-LSIQFDDLFKKAWEEDTFSELEGDDHTAGSESPKAEA---EPDAKASISNEVSKG 300

Query: 301 LEK--SVLDEILSLDSGGLSLRSDQATDHGREK--KKEAWVVVGGREEISLHFHELVPDM 360
           LE   +VLDEILS  S   ++ S++A     +K  +KE W   G  ++I+  F+ELVPDM
Sbjct: 301 LETDVTVLDEILS--SAKTAIMSEEAVTGSSDKQLRKEGWATKGDSQDIADRFYELVPDM 360

Query: 361 ALDFPFELDTFQKE----------------------------------HCTRAVYTAPIK 420
           A++FPFELD FQKE                                  HCTRAVYTAPIK
Sbjct: 361 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 420

Query: 421 TISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           TISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 TISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. Swiss-Prot
Match: sp|O59801|SKI2_SCHPO (Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-33
Identity = 140/449 (31.18%), Postives = 200/449 (44.54%), Query Frame = 0


Query: 25  VEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGYIEETYLQPRLDPDEFSPEKVGRQW 84
           V+ ++ V  S+  +   D I   +F      T   Y  +T+L+P     +    K+ ++W
Sbjct: 6   VDAINEVAVSNKDKIELDGIKDDSFDGHLSITEATYDVDTFLKPSPALSKDWIRKLQKKW 65

Query: 85  DFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGTTGGTWEPCSVQVDVSELNVEAQE 144
           D +           +  R+ +       F+R   +G   G  E   V   + +LN  ++ 
Sbjct: 66  DREITYKGLYEYPETLARTQI------RFQRHGLEGKIMGYKE---VPELIEDLN--SKN 125

Query: 145 SGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVDRILPDAASNGEWVQEILNG--GRA 204
           S S  R P    +FVRGS +N PF    L D   VD I  + +     V+  L G  G  
Sbjct: 126 SSSFLRKPSSKNEFVRGSTSNIPF----LADDSDVDAIAGEPS-----VKMALYGEDGLL 185

Query: 205 QFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQFDDLFKKAWEEEA 264
           Q VPP   +GL                  S+  TS  +NL        D+   + W+ + 
Sbjct: 186 Q-VPPGFSRGL------------------SMTATSTTDNLN-------DEFDPEKWDTKK 245

Query: 265 IVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSLDSGGLSLRSDQA 324
           + S              S +  V ++EL         + S +D++L      +SL     
Sbjct: 246 VKS--------------SNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTL 305

Query: 325 TDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKE-------------- 384
             H   K+ +   VV     I  +F +LVP+MALDFPFELD FQKE              
Sbjct: 306 NLH---KQPDYAHVVDSSAPIE-NFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVA 365

Query: 385 --------------------HCTRAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVSLRP 437
                               H T+A+YT+PIK +SNQK+RDF  KF DVG+LTGDV + P
Sbjct: 366 AHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNP 390

[Close]

BLAST of Carg12414 vs. Swiss-Prot
Match: sp|Q15477|SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens OX=9606 GN=SKIV2L PE=1 SV=3)

HSP 1 Score: 132.9 bits (333), Expect = 8.8e-30
Identity = 104/341 (30.50%), Postives = 153/341 (44.87%), Query Frame = 0


Query: 132 QVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD-RILPDAASNG 191
           +V +   N+ A  S S  R PGPA   + G+    PF PGG+D+    D     +A    
Sbjct: 118 EVLLENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPTITDLNTREEAEEEI 177

Query: 192 EWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQF 251
           ++ +++L       +PP  K+G+D    K+ P              +P   L   +S   
Sbjct: 178 DFEKDLLT------IPPGFKKGMDFAP-KDCP--------------TPAPGL-LSLSCML 237

Query: 252 DDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSL 311
           + L     +E+      + V     P+ +++              AP    S L++++ L
Sbjct: 238 EPLDLGGGDEDE----NEAVGQPGGPRGDTVS--------ASPCSAPLARASSLEDLV-L 297

Query: 312 DSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKE-- 371
                ++ + +A +      +E W +          F+ L+P  A  + FE D FQK+  
Sbjct: 298 KEASTAVSTPEAPE---PPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAI 357

Query: 372 --------------------------------HCTRAVYTAPIKTISNQKYRDFCGKF-D 431
                                           H TR +YT+PIK +SNQK+RDF   F D
Sbjct: 358 LHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD 417

Query: 432 VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           VGLLTGDV L PEASCLIMTTEILRSMLY G+D+IRD+EWV
Sbjct: 418 VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV 420

[Close]

BLAST of Carg12414 vs. Swiss-Prot
Match: sp|P35207|SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI2 PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-27
Identity = 139/473 (29.39%), Postives = 194/473 (41.01%), Query Frame = 0


Query: 15  GFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPK-ETPETIKGYIEETYLQPR---- 74
           GFS  S     + L  +  ++ V    D I    F   + P+     I++ +L+P     
Sbjct: 4   GFSSSSIQELYQSLKEITNNADVELFEDRITKLDFESTDEPKHANDIIKDRFLRPSNALP 63

Query: 75  ---LD-----PDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGT 134
              LD     P   SPE    + D+   E+ KV  DP    S         F+R   +G 
Sbjct: 64  WSLLDMVQDVPHTSSPEDCSGKLDYK--ELLKVP-DPINRTS-------YQFKRTGLEGK 123

Query: 135 TGGTWEPCSVQVDVSEL-NVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 194
             G  E    +VD+ E+ N  A  S S  R     ++ VRGS    PF PGG+     + 
Sbjct: 124 ISGYKE----EVDLKEVANANASNSLSITRSINHNQNSVRGSTAQLPFTPGGI----PMK 183

Query: 195 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 254
            +  D+  NG       +   A     + K G  L D+ E  N      D      SP E
Sbjct: 184 SVKTDSEQNG-------SSTMANATKLLHKDGQGLFDIPEGMNRGIKPMD------SPAE 243

Query: 255 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 314
           N  ++ + QF +L K+  E +  +                                    
Sbjct: 244 N--EDQNGQFKEL-KQLNEIDNELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303

Query: 315 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 374
                EI  L   G+     +        KKE   VV    +I  +F EL+P+ A  +PF
Sbjct: 304 XXXXXEIDELLPIGIDFGRTKPVSKSVPVKKEWAHVVDLNHKIE-NFDELIPNPARSWPF 363

Query: 375 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 434
           ELDTFQKE                                  + T+ +YT+PIK +SNQK
Sbjct: 364 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQK 423

Query: 435 YRDFCGKFD---VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           +RDF   FD   +GL+TGDV + P+A+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 424 FRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFV 441

[Close]

BLAST of Carg12414 vs. Swiss-Prot
Match: sp|Q9XIF2|MTR4_ARATH (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-19
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 355 ALDFPFELDTFQKE---------------HCT-------------------RAVYTAPIK 414
           A DFPF LD+FQ E               H +                   R +YT+PIK
Sbjct: 61  AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120

Query: 415 TISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
            +SNQKYRDF  +F DVGL+TGDV++ P ASCL+MTTEILRSM Y+G++I+R++ W+
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWI 177

[Close]

BLAST of Carg12414 vs. TrEMBL
Match: tr|A0A1S4E2B4|A0A1S4E2B4_CUCME (LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH11 OS=Cucumis melo OX=3656 GN=LOC103497098 PE=4 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 1.3e-219
Identity = 388/472 (82.20%), Postives = 403/472 (85.38%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPI ATKELSFRVGFSGHSGHLR+EPLSTVERSSP+RSLPD ILPPAFPKETPETIK Y
Sbjct: 1   MDPIVATKELSFRVGFSGHSGHLRIEPLSTVERSSPIRSLPDVILPPAFPKETPETIKNY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPS PRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
             GGTWEP S QVDVSELNVE QESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQS+D
Sbjct: 121 AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQ--SLFKTSP 240
           RILPDAASNGEWV E+LNGG AQF+ PILKQGLDLGDLKEYPNSW VYE+Q  S FKTS 
Sbjct: 181 RILPDAASNGEWVHEVLNGGPAQFISPILKQGLDLGDLKEYPNSWTVYENQSSSSFKTSR 240

Query: 241 VENLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           +ENLQ E+SVQFDDLFKKAWEE+AI SVEDGVC+G+SPKAESIK E QV ELE  SI PA
Sbjct: 241 IENLQSELSVQFDDLFKKAWEEDAIESVEDGVCAGQSPKAESIKSEAQVRELEAISITPA 300

Query: 301 LEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDF 360
              S LDEILSL+SGG SL SDQATD G + KKEAWVVVGGRE+ISL FH+LVPDMALDF
Sbjct: 301 PGISALDEILSLESGGFSLSSDQATDGGAQ-KKEAWVVVGGREDISLRFHDLVPDMALDF 360

Query: 361 PFELDTFQKE----------------------------------HCTRAVYTAPIKTISN 420
           PFELDTFQKE                                  HCTRAVYTAPIKTISN
Sbjct: 361 PFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN 420

Query: 421 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 471

[Close]

BLAST of Carg12414 vs. TrEMBL
Match: tr|A0A0A0LV33|A0A0A0LV33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528500 PE=4 SV=1)

HSP 1 Score: 766.5 bits (1978), Expect = 3.2e-218
Identity = 388/472 (82.20%), Postives = 405/472 (85.81%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERS+P+RSLPDFILPPAFPKETPETIK Y
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPS PRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
             GGTWEP S QVDVSELNVE QESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQS+D
Sbjct: 121 AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQ--SLFKTSP 240
           RILPDAASNGEWV E+LNGG AQF+PPILK+GLDLGDLKEYPNSWNVYE+Q  S FKTSP
Sbjct: 181 RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240

Query: 241 VENLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           +ENLQ E+SVQFDDLFKKAWEE+AI SVED    G+SPKAESIK E +V ELE  SIAPA
Sbjct: 241 IENLQSELSVQFDDLFKKAWEEDAIESVED----GQSPKAESIKSEDRVRELEAISIAPA 300

Query: 301 LEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDF 360
              S LDEILSL+SGG SL SDQAT+ G + KKEAWVVVGGRE+ISL FH+LVPDMALDF
Sbjct: 301 PGISALDEILSLESGGFSLSSDQATEVGAQ-KKEAWVVVGGREDISLRFHDLVPDMALDF 360

Query: 361 PFELDTFQKE----------------------------------HCTRAVYTAPIKTISN 420
           PFELDTFQKE                                  HCTRAVYTAPIKTISN
Sbjct: 361 PFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN 420

Query: 421 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 QKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 467

[Close]

BLAST of Carg12414 vs. TrEMBL
Match: tr|A0A2N9HXV9|A0A2N9HXV9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44393 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 2.6e-172
Identity = 311/462 (67.32%), Postives = 361/462 (78.14%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MD IEAT ELSFRVGFSGHSGHLRVEP+STVERS+P+ SLPDF+LPPAF +ETP++IK Y
Sbjct: 1   MDRIEATNELSFRVGFSGHSGHLRVEPISTVERSNPLNSLPDFVLPPAFARETPDSIKAY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYL PRLDP EFSPEKVGRQWDFDWFE AKV L+PS PRS+V+PTW LPF R KK G
Sbjct: 61  IEETYLSPRLDPQEFSPEKVGRQWDFDWFERAKVPLEPSLPRSIVIPTWELPFRRQKK-G 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           +    WEP SVQVDVSEL + AQ+  S PR  GPAKDFVRGSINNRPFRPGGLDDS+S++
Sbjct: 121 SMQEKWEPNSVQVDVSELMLGAQD--SLPRATGPAKDFVRGSINNRPFRPGGLDDSRSLE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RI P+ ASNGEWV+E+LNGG AQ + P LK+GLDLG+LK YP+SWNVY+DQSL K++  E
Sbjct: 181 RIHPEGASNGEWVREVLNGGPAQAITPSLKKGLDLGNLKAYPSSWNVYKDQSLLKSTSDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDG--------------------------VCSGE 300
            L  E+SVQFDDLF+KAWEE+ ++  E                             C   
Sbjct: 241 KL-GELSVQFDDLFQKAWEEDVVLESEGDDTKRNEAKSGLAVLDNWDFEELGFGEKCYSP 300

Query: 301 SPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAW 360
           S  AES++LE + N+ + +S A   E S+LD+ILS+ SGG +L+ D  +  G ++ ++AW
Sbjct: 301 SSDAESVELECESNKDDVSSSANEPELSLLDDILSVKSGGSTLKLDGMSGGGGKQLQQAW 360

Query: 361 VVVGGREEISLHFHELVPDMALDFPFELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKF 420
            V GG E I+  F+ELVPDMAL+FPFELD FQKEHCTRAVYTAPIKTISNQKYRDFCGKF
Sbjct: 361 AVTGGSEGIAERFYELVPDMALEFPFELDKFQKEHCTRAVYTAPIKTISNQKYRDFCGKF 420

Query: 421 DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 458

[Close]

BLAST of Carg12414 vs. TrEMBL
Match: tr|A0A2P4HCV7|A0A2P4HCV7_QUESU (Dexh-box atp-dependent rna helicase dexh11 OS=Quercus suber OX=58331 GN=CFP56_59252 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 1.5e-170
Identity = 315/470 (67.02%), Postives = 358/470 (76.17%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MD IEAT ELSFRVGFSGHSGHLRVEP+STVERS PV SLPDFILPPAFP+ETPE+IK Y
Sbjct: 1   MDRIEATNELSFRVGFSGHSGHLRVEPISTVERSDPVNSLPDFILPPAFPRETPESIKTY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           +EETYL PRLDP+EFSPEKVGRQWDFDWF  AKV L+PS PRS+VVPTW LPF R KK G
Sbjct: 61  VEETYLSPRLDPEEFSPEKVGRQWDFDWFGRAKVPLEPSLPRSIVVPTWELPFRRQKK-G 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
                WEP SVQVDVSEL V AQ+  S PR  GPAKDF+RGSINNRPFRPGGLD+SQS++
Sbjct: 121 LMQEIWEPKSVQVDVSELIVGAQD--SLPRTAGPAKDFLRGSINNRPFRPGGLDESQSLE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RI P+ ASNGEWV+E+LNGG AQ V P LK+GLDLG+LK YP+SWNVY+DQS  K++  E
Sbjct: 181 RIHPEGASNGEWVREVLNGGPAQAVTPSLKKGLDLGNLKVYPSSWNVYKDQSSIKSTSDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
            L  E+SVQFDDLF KAWE++ +   E     G   +AES+KLE + N+ + +S     E
Sbjct: 241 KL-GELSVQFDDLFMKAWEDDIVPEYEG---DGPLSEAESVKLEDESNKADVSSSPNEPE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
            S+LD+ILS++SGG   + D  +D GR++K++A  V GG E I+ HFHELVPDMALDFPF
Sbjct: 301 LSLLDDILSVESGGSMTKLDGISDGGRQQKQQARAVTGGGEGIAEHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELD FQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDKFQKEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGD+SLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 463

[Close]

BLAST of Carg12414 vs. TrEMBL
Match: tr|A0A251NL50|A0A251NL50_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G062900 PE=4 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 4.7e-169
Identity = 314/471 (66.67%), Postives = 352/471 (74.73%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPI A   LSFRVGFSGHSGHLR+EPLST E S+PV SLPDFILPPAF +ETPE+IK Y
Sbjct: 1   MDPIVAANGLSFRVGFSGHSGHLRLEPLSTDESSNPVNSLPDFILPPAFARETPESIKEY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IE+TYL PRLDP+ FSPEKVGRQWDFDWF+ A V L+PS PR+VVVPTW LPF R + DG
Sbjct: 61  IEDTYLLPRLDPEVFSPEKVGRQWDFDWFDNANVPLEPSLPRTVVVPTWELPF-RSQNDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           + GG WEP SVQVDVSEL V AQESGS PRV GPAKDFVRGSINNRPFRPGGLDDS+S++
Sbjct: 121 SVGGQWEPKSVQVDVSELIVGAQESGSLPRVAGPAKDFVRGSINNRPFRPGGLDDSKSLE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFK-TSPV 240
           R+LPD ASNGEWV E+L GG AQ VPP  KQGLDLGDLK YP SWNVY+DQS  K TS  
Sbjct: 181 RVLPDGASNGEWVHELLIGGSAQAVPPSFKQGLDLGDLKAYPCSWNVYKDQSPLKSTSDE 240

Query: 241 ENLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPAL 300
           ++LQ E+SVQFDDLFKKAWEE+ +    DG  SG    +ES+K E + NE++    +   
Sbjct: 241 KDLQSELSVQFDDLFKKAWEEDVVEFEGDGQLSG----SESVKSEDEANEVDVARNSCEP 300

Query: 301 EKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFP 360
           E SVLDEILS+++          TD   EK  EAW + GG E I+ +F++L+PD ALD+P
Sbjct: 301 ELSVLDEILSVEANS----RFNETDEDGEKNPEAWAISGGTEWIAENFYDLIPDKALDYP 360

Query: 361 FELDTFQKE----------------------------------HCTRAVYTAPIKTISNQ 420
           FELD FQKE                                  HCTRAVYTAPIKTISNQ
Sbjct: 361 FELDKFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQ 420

Query: 421 KYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           KYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 KYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 462

The following BLAST results are available for this feature:

BLAST of Carg12414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948672.1	9.0e-249	92.13	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita moschata]	[more]
XP_022948673.1	6.5e-247	91.91	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita moschata]	[more]
XP_023522326.1	6.5e-247	91.49	DExH-box ATP-dependent RNA helicase DExH11-like, partial [Cucurbita pepo subsp. ...	[more]
XP_022997907.1	1.1e-246	91.49	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita maxima]	[more]
XP_022997908.1	7.9e-245	91.28	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg12414 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46960.1	8.1e-151	58.40	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G59760.1	1.0e-20	45.30	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT2G06990.1	1.5e-19	60.61	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G70070.1	2.8e-10	54.39	DEAD/DEAH box helicase, putative	[more]

BLAST of Carg12414 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JAA5\|SKI2_ARATH	1.5e-149	58.40	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SK...	[more]
sp\|O59801\|SKI2_SCHPO	3.8e-33	31.18	Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strai...	[more]
sp\|Q15477\|SKIV2_HUMAN	8.8e-30	30.50	Helicase SKI2W OS=Homo sapiens OX=9606 GN=SKIV2L PE=1 SV=3	[more]
sp\|P35207\|SKI2_YEAST	1.4e-27	29.39	Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]
sp\|Q9XIF2\|MTR4_ARATH	1.8e-19	45.30	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]

BLAST of Carg12414 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2B4\|A0A1S4E2B4_CUCME	1.3e-219	82.20	LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH11 OS=Cucumis melo ...	[more]
tr\|A0A0A0LV33\|A0A0A0LV33_CUCSA	3.2e-218	82.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528500 PE=4 SV=1	[more]
tr\|A0A2N9HXV9\|A0A2N9HXV9_FAGSY	2.6e-172	67.32	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44393 PE=4 SV=1	[more]
tr\|A0A2P4HCV7\|A0A2P4HCV7_QUESU	1.5e-170	67.02	Dexh-box atp-dependent rna helicase dexh11 OS=Quercus suber OX=58331 GN=CFP56_59...	[more]
tr\|A0A251NL50\|A0A251NL50_PRUPE	4.7e-169	66.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G062900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12414-RA	Carg12414-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 354..437 e-value: 2.1E-19 score: 71.3
None	No IPR available	PANTHER	PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	coord: 368..436 coord: 123..368
None	No IPR available	PANTHER	PTHR12131:SF8	HELICASE SKI2W	coord: 368..436 coord: 123..368
None	No IPR available	CDD	cd00046	DEXDc	coord: 362..436 e-value: 0.00117606 score: 36.9316
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 368..431

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12414	Cla008187	Watermelon (97103) v1	carwmB0440
Carg12414	Csa1G528500	Cucumber (Chinese Long) v2	carcuB0471
Carg12414	MELO3C020574	Melon (DHL92) v3.5.1	carmeB0449
Carg12414	ClCG03G000980	Watermelon (Charleston Gray)	carwcgB0436
Carg12414	CSPI01G23660	Wild cucumber (PI 183967)	carcpiB0476
Carg12414	Cucsa.146840	Cucumber (Gy14) v1	carcgyB0509
Carg12414	CmaCh01G006470	Cucurbita maxima (Rimu)	carcmaB0613
Carg12414	CmoCh01G006800	Cucurbita moschata (Rifu)	carcmoB0596
Carg12414	Lsi02G013070	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12414	Cp4.1LG02g11560	Cucurbita pepo (Zucchini)	carcpeB0623
Carg12414	CsGy1G023120	Cucumber (Gy14) v2	carcgybB0448
Carg12414	MELO3C020571.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12414	CsaV3_1G035960	Cucumber (Chinese Long) v3	carcucB0472
Carg12414	Cla97C03G051780	Watermelon (97103) v2	carwmbB0467
Carg12414	Bhi08G000442	Wax gourd	carwgoB0535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12414	Wild cucumber (PI 183967)	carcpiB0478
Carg12414	Cucumber (Chinese Long) v2	carcuB0473
Carg12414	Cucumber (Chinese Long) v3	carcucB0475
Carg12414	Melon (DHL92) v3.5.1	carmeB0450
Carg12414	Melon (DHL92) v3.6.1	carmedB0453
Carg12414	Watermelon (Charleston Gray)	carwcgB0431
Carg12414	Watermelon (97103) v1	carwmB0438
Carg12414	Watermelon (97103) v2	carwmbB0463
Carg12414	Silver-seed gourd	carcarB192
Carg12414	Silver-seed gourd	carcarB408
Carg12414	Silver-seed gourd	carcarB449
Carg12414	Cucumber (Gy14) v2	carcgybB0450
Carg12414	Cucumber (Gy14) v1	carcgyB0510
Carg12414	Cucurbita maxima (Rimu)	carcmaB0610
Carg12414	Cucurbita maxima (Rimu)	carcmaB0612
Carg12414	Cucurbita moschata (Rifu)	carcmoB0594
Carg12414	Cucurbita moschata (Rifu)	carcmoB0595
Carg12414	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12414	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12414	Cucurbita pepo (Zucchini)	carcpeB0621