Carg12413 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12413
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pre-mRNA-splicing factor RBM22
Location	Cucurbita_argyrosperma_scaffold_074 : 814701 .. 819105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTTCCTTCATCTCTGAATTTCCCCTCCCGCCGCCGCCGCCGCCGCACTCACACAACCATCTCTGCTGATAGTCGCCGGTACGCCCCAACCGCCACGTTTTCTTTTTTCTTCCCCTTTACCTTCCTCCCTGCTGCAACCTCTGGACGTCATGGGTCAGTTTTCCATTTCAGTTTCTCCATTTTTCAATTCTGCAATCGAAGTCTGTCCTGATAAATCAGTTTTTTTTTTTGGATTTACTCACAAAATAGGGTGAATTTGGAATGGAGTTAGGTCAGTTTTAGTTTGAAATCCTGTAAATCCAATCTATTTTGGATGGAAAATTTTTGGATGAAGACGGGATCTCAAACCATTTTGAATTTCTGATTCTCCTTTTCCTTTTTCTTTTTTTTTAAATTCACACCAAGCAGAGTAAATGACTTGAGATCATTCCAAATCTAGGGTTTCTCAACAGAGGGTTCCTCCCTGGGCTCTGGGCGATCATTCAGTTTGAAGTCTCACTTATTGATTGAGGGACTTCCGAAGAGTTGATTGATTTCTTCGCAGTCCTACTCAAGGGAGCCAAAACAGAGTTGAGTTCCACACGAATTTTCCATGGCGCATCGGTTGCTGAGGGATCTGGAAGCTGATGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAGTCTTGCCTTGGTGATAACCCCTATGTTCGCATGGTATGTTTGTTCTTCTATCTTCTCTAAGTTTAGTACTCCCAACCCCTCGAGTTACTTCGAACCCGTCCTTGAATTGCGTTCCTAAGTTCACAATTGATCACATAAATGTTCGAGTAATTCCTTCTCGAACTGTTCTGTTCGTGTAATTACCGTCAATTGATGTCCTGTTTGAACATAGATCCAGATGGTTCCTGTTAACTGTTTATGATTTTTATATACTCACTAGCATGAAATATGTGGGGAAGTAAGCAATGGTGGTTACTGGAGTTGTGCTCTTTTGCAATTCATGCTTAGTCTTTGCTTTAGACATTATTTTGATTAAATGAATGCGATATCTGAATGCAGACGAAAGCTGATTATGACAAAGAATGCAAAATTTGCACGCGACCATTTACAGTTTTCAGGTGGAGACCTGGACGCGATGCCAGATATAAGAAATCTGAGATTTGCCAGACTTGCAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAGGTTCGAGATACTGCCCTGTCTATCAACTCCAACGATTCTATTCCTAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGGAAGGTATGCACTTTCTGCTTAGTATTTCCTCTAGTTATTGGATGATTAGTCCTTGCAGTTGTTGGTGCAATCTCTTGGAATGTTAAGGGAAAAGCATTATGATAGCCAACCATCTTAGCCACTATGATAAGCCTTGATGGCCATAGATATGGCTAATACTAATAGCATGGTAAAAACTAAAATGTCGGATTGTTTTGATTGCTTAACATAAATAACTTTTGCCTTATTAGACATGATTTCCAATTTTCAATTTTCTTGAAAAGAAGTTGAGCTTATTTCTTTTCTTATTGAAAAAATTGTCAGTTTTTTTTGTTGTTCTGGATCATGCTTCGTACATCTTTTTCAGACCTCATAAGTGTATTTTACTTTAGATTCTCTGTTGTTCTGGATCATGCTTTTCAGACCTAATAAGTGTTTTTTACTTTACCTAATAAGTGTTTTTCAGACCTATTAAGTGTTTTTTTGTTGTTCTGGATCAATTAATTTATATCAGACCTAATAAGTGTTTTTTACTTTAGATTCTTTTTCTTTGTTAGTCATGCTTTCTGTGTACTTTTGCGCAAGTGGATTGAAAAATGTTAGTAATAAAGGTGGGCATATTTGGCAAAGGTTCTTGATTTCAATCAAGATTGTGGGCATATGGGTTTAAAATCTGAATGTTATTGGGTCAAACATACTCTATTTAACGGACATCCATGTTCTGCTGAAGTGTATGGATGAAATGTTGTTTTCTCTCTCACTTTCATCTTCGCGACAAATTAATATTAATATTTAATATAATGAAACCAGGCTGTTTAAAGGAATGGGATCTTAATTTCCTTGAACAGTGAAGAACGAAAATTTTCACAAAGAAATATTAGATACCTGAGGAGGAATGTGATTTTATTACTTTGAAGAGGAGATAATTTGAGAAAATTGATAAAAGCTATTGAATTTAATTAGATGGCCATGGATGTGCACCATAAAAGTATCCTACGTGGCATTTGATTTGTTTTATAGTTTTTACATATTCAATGAATTAAATATGATTGCTGTAGCAGGTCTTTGCAGCTCTGTTGTTGCTAACTTGGATTTTGCTAATTCAGTTGAATGTTGACCATGCAGGCTAGAGCTGGTATTGATTATGAGTCCTCGTTTGGAAAGGCTCGGCCAAACGATACTATTCTGAAACTTCAACGAACTACCCCCTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGTACCAGAGGTTCGGAATGCCCTTACAGACATGAGATGCCTGAAACTGGAGAGTTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGTATGGTTGATCTTTTCCTTTTGAATGATTAGTTGTTGTGTGTCCGATCTTAGTCCCTGACCACCCAAATTTTCTATGCTTTTTCATGGTCAACATCTTGCATTTGTTACATATCTTAAGCTTCGTTTCAGCTTTATATCATATGAAATATAGTCTTCCTATAGTTCTTATTTATTGGAACAGAGATGATTGCTCAGTTTTTCATATGCAATTAGTTGATCAGTGGCTATTTAAATTAGTATTTACTATTTTGTGGTGAGTTGAGTTGTATTTCGAAAGATGTGACATTGAAATACATATTTTGTCCGCCTTTGACATCTCAACCTTGTGATTCCCCTTGGCCCTTGTTGGGTTGAATCTCATCACCCTTTATATCTTTTGTTCTATTCATGAAGTTTTATTTTCCTATCAAGTTTTTCCCCTTGGCCATTATAAAACTGAAATAGACGACTGAGCTATATTTCATTCGCACAGTTCGGTTTCGATTTGCAAGAATGTTAAAAGTCGCAGTTATCACATATTTTTCTATACTAGCCACTTTTTTGGTGATTCAGAATTTACAGAGATAATTGCTAATGAGGTTACTTTCTTTTCGAACTCCTCAGGGTTAACGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCTCTGGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGCTCGAGTCACCGAACAAGATCTTCGTGATAACTTTTATGCTCATGGTGAAATTGAATCCATTAGAATGGTGCTACAGCGGGCATGTGCTTTTGTGACCTACACCACCAGGGAAGGTGCAGAGAAGGCTGCAGGAGAGCTTTCTAACAAGCTGGTAGTAAAGGGCCTTAGGCTGAAATTGATGTGGGGTAGACCTCAAGCACCAAAACCAGAGTCGGAGGGTTCTGATGAAGCAAAGCAAGCAGCAGTGGCTCACAGTGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAGCCAGTTACACCCTCCAGGAACGCATGATCAACCTCAACCTATGCACTACTACAATATGCCGCCACCACCACCTCAGCAGGAGAGAGCATTCTATCCCTCAATGGACCCTCAAAGAATGGGAGCTTTGATTTCGACTCATGATTCGGGGGCACCCCATAGCGGACCTGCAAGTTCAACCGAAGCTAGACCCGGTTTGGAGAAACAACACCAGCAGGGACATCAATATCCATATCACGCAATGCACCCACCACCACCACATGCACAATATCAACAGCAATTTTATCCGCCATATGGGTATGTGCAGCAACATTATCCACAATACCCTCCTTATCATTCGAACATGCCACCCCCGCCCCAGCCCCAGCCCCAGCCCCCTCCAGGTAGCCAGCAATACCAGCAGCATTCTGCACCACAAGGCTCTGCCCCTCAGTCGCAAGGAGGAGCATCTTCAGGTTCAGCACCGCTGGGATCGACGCCTTCAGCATCTGCTCCATCTTCAACTTCTTCTGAACCTGCATCATCATAGATTAGGTCTCCGACGACAAGTCTGGCTGTTGGATGGGGAGGCGCGGGGCCTCTTTGTTGTTATATCGTTCCTATGCTGTCATGTCTTCATTATGTAATATGACACTCTTTTTACTTGAGAATGAGCAATTTGGATTCACTGCTTCCATTCCTTTGTCTGTTTTGAGGCAAAAAGCCCTTTGTTGTTAGTTTAGTCTAAACGAAATAGAAGTGAAATTCGGGTGTTACAAAC

mRNA sequence

CGTTTCCTTCATCTCTGAATTTCCCCTCCCGCCGCCGCCGCCGCCGCACTCACACAACCATCTCTGCTGATAGTCGCCGGGTTTCTCAACAGAGGGTTCCTCCCTGGGCTCTGGGCGATCATTCAGTTTGAAGTCTCACTTATTGATTGAGGGACTTCCGAAGAGTTGATTGATTTCTTCGCAGTCCTACTCAAGGGAGCCAAAACAGAGTTGAGTTCCACACGAATTTTCCATGGCGCATCGGTTGCTGAGGGATCTGGAAGCTGATGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAGTCTTGCCTTGGTGATAACCCCTATGTTCGCATGACGAAAGCTGATTATGACAAAGAATGCAAAATTTGCACGCGACCATTTACAGTTTTCAGGTGGAGACCTGGACGCGATGCCAGATATAAGAAATCTGAGATTTGCCAGACTTGCAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAGGTTCGAGATACTGCCCTGTCTATCAACTCCAACGATTCTATTCCTAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGGAAGGCTAGAGCTGGTATTGATTATGAGTCCTCGTTTGGAAAGGCTCGGCCAAACGATACTATTCTGAAACTTCAACGAACTACCCCCTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGTACCAGAGGTTCGGAATGCCCTTACAGACATGAGATGCCTGAAACTGGAGAGTTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGGTTAACGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCTCTGGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGCTCGAGTCACCGAACAAGATCTTCGTGATAACTTTTATGCTCATGGTGAAATTGAATCCATTAGAATGGTGCTACAGCGGGCATGTGCTTTTGTGACCTACACCACCAGGGAAGGTGCAGAGAAGGCTGCAGGAGAGCTTTCTAACAAGCTGGTAGTAAAGGGCCTTAGGCTGAAATTGATGTGGGGTAGACCTCAAGCACCAAAACCAGAGTCGGAGGGTTCTGATGAAGCAAAGCAAGCAGCAGTGGCTCACAGTGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAGCCAGTTACACCCTCCAGGAACGCATGATCAACCTCAACCTATGCACTACTACAATATGCCGCCACCACCACCTCAGCAGGAGAGAGCATTCTATCCCTCAATGGACCCTCAAAGAATGGGAGCTTTGATTTCGACTCATGATTCGGGGGCACCCCATAGCGGACCTGCAAGTTCAACCGAAGCTAGACCCGGTTTGGAGAAACAACACCAGCAGGGACATCAATATCCATATCACGCAATGCACCCACCACCACCACATGCACAATATCAACAGCAATTTTATCCGCCATATGGGTATGTGCAGCAACATTATCCACAATACCCTCCTTATCATTCGAACATGCCACCCCCGCCCCAGCCCCAGCCCCAGCCCCCTCCAGGTAGCCAGCAATACCAGCAGCATTCTGCACCACAAGGCTCTGCCCCTCAGTCGCAAGGAGGAGCATCTTCAGGTTCAGCACCGCTGGGATCGACGCCTTCAGCATCTGCTCCATCTTCAACTTCTTCTGAACCTGCATCATCATAGATTAGGTCTCCGACGACAAGTCTGGCTGTTGGATGGGGAGGCGCGGGGCCTCTTTGTTGTTATATCGTTCCTATGCTGTCATGTCTTCATTATGTAATATGACACTCTTTTTACTTGAGAATGAGCAATTTGGATTCACTGCTTCCATTCCTTTGTCTGTTTTGAGGCAAAAAGCCCTTTGTTGTTAGTTTAGTCTAAACGAAATAGAAGTGAAATTCGGGTGTTACAAAC

Coding sequence (CDS)

ATGGCGCATCGGTTGCTGAGGGATCTGGAAGCTGATGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAGTCTTGCCTTGGTGATAACCCCTATGTTCGCATGACGAAAGCTGATTATGACAAAGAATGCAAAATTTGCACGCGACCATTTACAGTTTTCAGGTGGAGACCTGGACGCGATGCCAGATATAAGAAATCTGAGATTTGCCAGACTTGCAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAGGTTCGAGATACTGCCCTGTCTATCAACTCCAACGATTCTATTCCTAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGGAAGGCTAGAGCTGGTATTGATTATGAGTCCTCGTTTGGAAAGGCTCGGCCAAACGATACTATTCTGAAACTTCAACGAACTACCCCCTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGTACCAGAGGTTCGGAATGCCCTTACAGACATGAGATGCCTGAAACTGGAGAGTTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGGTTAACGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCTCTGGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGCTCGAGTCACCGAACAAGATCTTCGTGATAACTTTTATGCTCATGGTGAAATTGAATCCATTAGAATGGTGCTACAGCGGGCATGTGCTTTTGTGACCTACACCACCAGGGAAGGTGCAGAGAAGGCTGCAGGAGAGCTTTCTAACAAGCTGGTAGTAAAGGGCCTTAGGCTGAAATTGATGTGGGGTAGACCTCAAGCACCAAAACCAGAGTCGGAGGGTTCTGATGAAGCAAAGCAAGCAGCAGTGGCTCACAGTGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAGCCAGTTACACCCTCCAGGAACGCATGATCAACCTCAACCTATGCACTACTACAATATGCCGCCACCACCACCTCAGCAGGAGAGAGCATTCTATCCCTCAATGGACCCTCAAAGAATGGGAGCTTTGATTTCGACTCATGATTCGGGGGCACCCCATAGCGGACCTGCAAGTTCAACCGAAGCTAGACCCGGTTTGGAGAAACAACACCAGCAGGGACATCAATATCCATATCACGCAATGCACCCACCACCACCACATGCACAATATCAACAGCAATTTTATCCGCCATATGGGTATGTGCAGCAACATTATCCACAATACCCTCCTTATCATTCGAACATGCCACCCCCGCCCCAGCCCCAGCCCCAGCCCCCTCCAGGTAGCCAGCAATACCAGCAGCATTCTGCACCACAAGGCTCTGCCCCTCAGTCGCAAGGAGGAGCATCTTCAGGTTCAGCACCGCTGGGATCGACGCCTTCAGCATCTGCTCCATCTTCAACTTCTTCTGAACCTGCATCATCATAG

Protein sequence

MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVTEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGRPQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHYYNMPPPPPQQERAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPPHAQYQQQFYPPYGYVQQHYPQYPPYHSNMPPPPQPQPQPPPGSQQYQQHSAPQGSAPQSQGGASSGSAPLGSTPSASAPSSTSSEPASS

Homology

[Close]

BLAST of Carg12413 vs. NCBI nr
Match: XP_022948980.1 (zinc finger CCCH domain-containing protein 49 [Cucurbita moschata])

HSP 1 Score: 858.6 bits (2217), Expect = 1.1e-245
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
Sbjct: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX
Sbjct: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP 420
           XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP
Sbjct: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP 420

Query: 421 HAQYQQQF 429
           HAQYQQQF
Sbjct: 421 HAQYQQQF 428

[Close]

BLAST of Carg12413 vs. NCBI nr
Match: XP_023525004.1 (zinc finger CCCH domain-containing protein 40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 837.8 bits (2163), Expect = 2.0e-239
Identity = 441/450 (98.00%), Postives = 441/450 (98.00%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
Sbjct: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX
Sbjct: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP 420
           XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPG EKQHQQGHQYPYHAM     
Sbjct: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGSEKQHQQGHQYPYHAMXXXXX 420

Query: 421 HAQYQQQFXXXXXXXXXXXXXXXXXHSNMP 451
              YQQQFXXXXXXXXXXXXXXXXXHSNMP
Sbjct: 421 XXXYQQQFXXXXXXXXXXXXXXXXXHSNMP 450

[Close]

BLAST of Carg12413 vs. NCBI nr
Match: XP_022998053.1 (zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima] >XP_022998054.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima] >XP_022998055.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima] >XP_022998056.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima])

HSP 1 Score: 830.9 bits (2145), Expect = 2.4e-237
Identity = 415/416 (99.76%), Postives = 415/416 (99.76%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
Sbjct: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX
Sbjct: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMH 417
           XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPG EKQHQQGHQYPYHAMH
Sbjct: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGSEKQHQQGHQYPYHAMH 416

[Close]

BLAST of Carg12413 vs. NCBI nr
Match: XP_022970525.1 (zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima])

HSP 1 Score: 813.9 bits (2101), Expect = 3.0e-232
Identity = 393/428 (91.82%), Postives = 402/428 (93.93%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRD ALSINSNDSIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDIALSINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESS+GKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAA ELSNKLV+KGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQH+ LHP G+HDQPQ MH          
Sbjct: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHNHLHPSGSHDQPQAMHYYNIPAPPPQ 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP 420
              AFYPSMDPQRMGAL+STH++G P SGPA STE RPG EKQHQQGHQ+PYH MHPPPP
Sbjct: 361 QERAFYPSMDPQRMGALVSTHEAGGPPSGPAGSTETRPGSEKQHQQGHQFPYHTMHPPPP 420

Query: 421 HAQYQQQF 429
             QYQQQF
Sbjct: 421 -TQYQQQF 427

[Close]

BLAST of Carg12413 vs. NCBI nr
Match: XP_023520312.1 (zinc finger CCCH domain-containing protein 40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 812.8 bits (2098), Expect = 6.8e-232
Identity = 405/428 (94.63%), Postives = 415/428 (96.96%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRD ALSINSNDSIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDIALSINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESS+GKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAA ELSNKLV+KGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQH+ LHP G+HDQPQ MHXXXXXXXXXX
Sbjct: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHNHLHPSGSHDQPQAMHXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPP 420
           XXXAFYPSMDPQRMGAL+STH++G P +GPA STE RPG EKQHQQGHQ+PYH MHPPPP
Sbjct: 361 XXXAFYPSMDPQRMGALVSTHEAGGPPNGPAGSTETRPGSEKQHQQGHQFPYHTMHPPPP 420

Query: 421 HAQYQQQF 429
             QYQQQF
Sbjct: 421 -TQYQQQF 427

[Close]

BLAST of Carg12413 vs. TAIR10
Match: AT2G29580.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 603.6 bits (1555), Expect = 1.1e-172
Identity = 303/376 (80.59%), Postives = 331/376 (88.03%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+E+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++DSIPKSDVNRE+FAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRK RAG+DYESSFGK RPNDTI  LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++ ++ACAFVTYTTREGAEKAA ELSN+LVV G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQ PKP+ +GS++  Q +VAHSG+LPRAV                     XXXXXXXXXX
Sbjct: 301 PQVPKPDQDGSNQ--QGSVAHSGLLPRAV------XXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGA 377
           XX  FYPSMDPQRMGA
Sbjct: 361 XXRPFYPSMDPQRMGA 368

[Close]

BLAST of Carg12413 vs. TAIR10
Match: AT1G07360.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 590.1 bits (1520), Expect = 1.3e-168
Identity = 277/329 (84.19%), Postives = 307/329 (93.31%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++DSIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAG+DYESSFGK RPNDTILKLQRTTPYYKRNRAHVCSF+IRGECTRG+ECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRIL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++  +ACAFVTYT+REGAEKAA ELSN+LV+ G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAV 330
              PKP+ +G+++  Q  VAHSG+LPRAV
Sbjct: 301 ---PKPDQDGANQ--QGGVAHSGLLPRAV 324

[Close]

BLAST of Carg12413 vs. TAIR10
Match: AT5G07060.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 428.7 bits (1101), Expect = 5.0e-120
Identity = 223/415 (53.73%), Postives = 271/415 (65.30%), Query Frame = 0


Query: 7   RDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKK 66
           RD  ADGWE +DFPI CESC GDNPY+RMT+ADYDKECKIC+RPFT FRWRPGR+AR+KK
Sbjct: 4   RDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKK 63

Query: 67  SEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAEEHDRKA 126
           +EICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+INS+ S+P S VNREYFA+EHD K 
Sbjct: 64  TEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKT 123

Query: 127 RAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPET 186
           RAG+DYESSFGK +PNDTILKLQR TP Y++NR  +CSFY  G+C RG+EC +RHEMPET
Sbjct: 124 RAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPET 183

Query: 187 GELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVTEQDLRD 246
           GELS QNI+DRYY VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D
Sbjct: 184 GELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHD 243

Query: 247 NFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGRPQAPKP 306
           +FYA+GE+ESIR++ +                                          K 
Sbjct: 244 HFYAYGEMESIRVMAEDG----------------------------------------KY 303

Query: 307 ESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXXXXXAFY 366
           +  GS++ +Q ++AH+G+                      +  H               Y
Sbjct: 304 DQSGSNQQQQGSIAHTGLXXXXXXXXXXXXXXXXXXXXXXEYSH---------------Y 347

Query: 367 PSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPPH 422
           PSMD QRMGA  ST +S        SST       + ++    Y Y    P PPH
Sbjct: 364 PSMDTQRMGAAFSTQES------DGSST------SENNRAYSSYSY----PMPPH 347

[Close]

BLAST of Carg12413 vs. TAIR10
Match: AT5G04210.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-24
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 0


Query: 162 VCSFYIRG-ECTRGSECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLE 221
           +C  +  G +CTRG+ C YRHE+    +   ++      G+ +P  L++L +A     L+
Sbjct: 16  ICPLFDAGRQCTRGTMCLYRHEINRGLDCHGRS------GLENPFVLEVLARACNTGPLK 75

Query: 222 PPEDESIRTLYVGGL-DARVTEQDLRDNFYAHGEIESIRMVLQR---ACAFVTYTTREGA 281
           PPED+SI+TLY+  L ++ V EQD+RD+F  +GEIESI +   R    CAF+TYTTR  A
Sbjct: 76  PPEDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAA 135

Query: 282 EKAAGELSNKLVVKGLRLKLMWG 300
           EKA  ELS+   +KG R+KL+WG
Sbjct: 136 EKAMLELSSWTDIKGQRVKLLWG 152

[Close]

BLAST of Carg12413 vs. TAIR10
Match: AT1G49600.1 (RNA-binding protein 47A)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-11
Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 202 NDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVTEQDLRDNFYAHGEIESIRMVL 261
           N   AL L    G   S+   E  +  T++VGGLDA VTE+DL   F   GE+ S+++ +
Sbjct: 302 NGSQALTLAGGHGGNGSMSDGESNN-STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV 361

Query: 262 QRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGRPQAPKPESEGSDE 314
            + C FV +  R+ AE+A G L+  ++ K   ++L WGR    +  S+  ++
Sbjct: 362 GKGCGFVQFANRQSAEEAIGNLNGTVIGKN-TVRLSWGRSPNKQWRSDSGNQ 411

[Close]

BLAST of Carg12413 vs. Swiss-Prot
Match: sp|Q6Z358|C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 6.1e-184
Identity = 315/401 (78.55%), Postives = 343/401 (85.54%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM +A+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTC KLKNVCQVCLLDLEYGLPVQVRDTALS NSND+IP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDY+SS GKAR NDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL+KAGEMPSL PP+DESIRTLY+GGLD+RVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRD FYAHGEIE+IRMVLQRACAFVTYTTREGAEKAA EL+NKLV+KG+RLKLMWG+
Sbjct: 241 EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHS--QLHPPGTHDQPQP--MHXXXXXX 360
           PQAPKPE +  +  +Q  VAH GMLPRAVISQQ S  Q  PPG   Q QP          
Sbjct: 301 PQAPKPEED--EAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNIP 360

Query: 361 XXXXXXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEAR 398
                    YPSMDPQRMGAL+ + + G    GP  + + +
Sbjct: 361 APPAAERTLYPSMDPQRMGALVESQE-GDGKPGPQQAGQGQ 398

[Close]

BLAST of Carg12413 vs. Swiss-Prot
Match: sp|Q5SNN4|C3H40_ORYSJ (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 1.4e-183
Identity = 318/424 (75.00%), Postives = 347/424 (81.84%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM +A+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+INSND+IP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDY+SS GKARPNDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEMPSL PP+DESIRTLY+GGL+ R+T
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRD FYAHGEIESIRMVLQRACAFVTYTTREGAEKAA EL+NKLV+KG+RLKLMWG+
Sbjct: 241 EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHS--QLHPPGTHDQPQPM--HXXXXXX 360
           PQAPKPE +  +  +Q  VAH GMLPRAVISQQ S  Q  PPG   Q Q           
Sbjct: 301 PQAPKPEDD--EAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIP 360

Query: 361 XXXXXXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMH 420
                    YPSMDPQRMGAL+ + +            + +PG ++  Q          +
Sbjct: 361 APPGAERTLYPSMDPQRMGALVKSQEG-----------DGKPGPQQAAQXXXXXXXXXXY 411

[Close]

BLAST of Carg12413 vs. Swiss-Prot
Match: sp|Q9ZW36|C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=At2g29580 PE=1 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 2.0e-171
Identity = 303/376 (80.59%), Postives = 331/376 (88.03%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+E+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++DSIPKSDVNRE+FAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRK RAG+DYESSFGK RPNDTI  LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++ ++ACAFVTYTTREGAEKAA ELSN+LVV G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQ PKP+ +GS++  Q +VAHSG+LPRAV                     XXXXXXXXXX
Sbjct: 301 PQVPKPDQDGSNQ--QGSVAHSGLLPRAV------XXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXAFYPSMDPQRMGA 377
           XX  FYPSMDPQRMGA
Sbjct: 361 XXRPFYPSMDPQRMGA 368

[Close]

BLAST of Carg12413 vs. Swiss-Prot
Match: sp|Q9LNV5|C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g07360 PE=1 SV=1)

HSP 1 Score: 590.1 bits (1520), Expect = 2.3e-167
Identity = 277/329 (84.19%), Postives = 307/329 (93.31%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++DSIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAG+DYESSFGK RPNDTILKLQRTTPYYKRNRAHVCSF+IRGECTRG+ECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRIL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++  +ACAFVTYT+REGAEKAA ELSN+LV+ G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAV 330
              PKP+ +G+++  Q  VAHSG+LPRAV
Sbjct: 301 ---PKPDQDGANQ--QGGVAHSGLLPRAV 324

[Close]

BLAST of Carg12413 vs. Swiss-Prot
Match: sp|Q9FL40|C3H53_ARATH (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 9.0e-119
Identity = 223/415 (53.73%), Postives = 271/415 (65.30%), Query Frame = 0


Query: 7   RDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKK 66
           RD  ADGWE +DFPI CESC GDNPY+RMT+ADYDKECKIC+RPFT FRWRPGR+AR+KK
Sbjct: 4   RDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKK 63

Query: 67  SEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAEEHDRKA 126
           +EICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+INS+ S+P S VNREYFA+EHD K 
Sbjct: 64  TEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKT 123

Query: 127 RAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPET 186
           RAG+DYESSFGK +PNDTILKLQR TP Y++NR  +CSFY  G+C RG+EC +RHEMPET
Sbjct: 124 RAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPET 183

Query: 187 GELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVTEQDLRD 246
           GELS QNI+DRYY VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D
Sbjct: 184 GELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHD 243

Query: 247 NFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGRPQAPKP 306
           +FYA+GE+ESIR++ +                                          K 
Sbjct: 244 HFYAYGEMESIRVMAEDG----------------------------------------KY 303

Query: 307 ESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXXXXXAFY 366
           +  GS++ +Q ++AH+G+                      +  H               Y
Sbjct: 304 DQSGSNQQQQGSIAHTGLXXXXXXXXXXXXXXXXXXXXXXEYSH---------------Y 347

Query: 367 PSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPPPH 422
           PSMD QRMGA  ST +S        SST       + ++    Y Y    P PPH
Sbjct: 364 PSMDTQRMGAAFSTQES------DGSST------SENNRAYSSYSY----PMPPH 347

[Close]

BLAST of Carg12413 vs. TrEMBL
Match: tr|A0A0A0LGN2|A0A0A0LGN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036090 PE=4 SV=1)

HSP 1 Score: 780.0 bits (2013), Expect = 3.2e-222
Identity = 389/428 (90.89%), Postives = 401/428 (93.69%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESS+GKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAA ELSNKLV++GLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPK E EGSDEAKQAAVAHSGMLPRAVISQQH+QLHPPGTHDQPQ MH     XXXXX
Sbjct: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQ----HQQGHQYPYHAMH 420
           XXXAFYPSMDPQRMGAL+STHD+G P +GP  STEARPG +KQ        HQ+PYH MH
Sbjct: 361 XXXAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQXXXXXXXXHQFPYHPMH 420

Query: 421 PPPPHAQY 425
            P   AQY
Sbjct: 421 -PXXXAQY 427

[Close]

BLAST of Carg12413 vs. TrEMBL
Match: tr|A0A1S3BU98|A0A1S3BU98_CUCME (zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo OX=3656 GN=LOC103493581 PE=4 SV=1)

HSP 1 Score: 762.3 bits (1967), Expect = 6.9e-217
Identity = 379/423 (89.60%), Postives = 390/423 (92.20%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESS+GKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV+
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAA ELSNKLV++GLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXXX 360
           PQAPK E EGSDEAKQAAVAHSGMLPRAVISQQH+QLHPPGTHDQPQ MH     XXXXX
Sbjct: 301 PQAPKAEMEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPXXXXX 360

Query: 361 XXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTE------ARPGLEKQHQQGHQYPYHA 418
           XXXAFYPSMDPQRMGAL+STHD+G P +GP  STE                   Q+PYH 
Sbjct: 361 XXXAFYPSMDPQRMGALVSTHDAGVPPNGPTGSTEXXXXXXXXXXXXXXXXXXXQFPYHP 420

[Close]

BLAST of Carg12413 vs. TrEMBL
Match: tr|A0A2I4G125|A0A2I4G125_9ROSI (zinc finger CCCH domain-containing protein 40-like OS=Juglans regia OX=51240 GN=LOC109003772 PE=4 SV=1)

HSP 1 Score: 729.6 bits (1882), Expect = 5.0e-207
Identity = 369/425 (86.82%), Postives = 390/425 (91.76%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKAD+DKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DAR+KK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFAE
Sbjct: 61  DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESS+GKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLE PEDESI+TLYVGGL+ RVT
Sbjct: 181 HEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEAPEDESIKTLYVGGLNERVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMV QRACAFVTYTTREGAEKAA ELSNKLV+KGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVPQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAK-QAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXX 360
           PQAPKPESEG+DEA+ QAAVAHSGMLPRA+ISQQ  QL PPG+  Q QPMH    XXXXX
Sbjct: 301 PQAPKPESEGADEARQQAAVAHSGMLPRAIISQQQGQLQPPGSQAQNQPMHYFNIXXXXX 360

Query: 361 XXXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPP 420
           XXXX FYPSMDPQRMGALI +H+  +  +GP+ S E + G EKQ QQ   YP+ AM  PP
Sbjct: 361 XXXXTFYPSMDPQRMGALIPSHEGTS--NGPSGSGENKSGPEKQ-QQAQHYPFQAM--PP 420

Query: 421 PHAQY 425
           PH QY
Sbjct: 421 PHGQY 420

[Close]

BLAST of Carg12413 vs. TrEMBL
Match: tr|A0A067KH26|A0A067KH26_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12812 PE=4 SV=1)

HSP 1 Score: 722.2 bits (1863), Expect = 7.9e-205
Identity = 361/428 (84.35%), Postives = 381/428 (89.02%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DAR+KK EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL INSNDSIPKSDVNREYFAE
Sbjct: 61  DARFKKPEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAG+MPSLEPPEDESI+TLYVGGLDAR+T
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGDMPSLEPPEDESIKTLYVGGLDARIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRD FYAHGEIES++MV QRA AFVTYTTREGAEKAA ELSNKLV+KGLRLKLMWGR
Sbjct: 241 EQDLRDQFYAHGEIESVKMVPQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAKQ-AAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXX 360
           PQ PKPESEG +EA+Q AA+AHSGMLPRAVISQQ +QLHPPGT DQPQ MH         
Sbjct: 301 PQVPKPESEGPEEARQLAAMAHSGMLPRAVISQQQNQLHPPGTQDQPQTMH-YFNIPPPP 360

Query: 361 XXXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAMHPPP 420
                FYPSMDPQRMGA++ + D GAP SGP+ S E    LE+Q  Q  QYPY  M  PP
Sbjct: 361 QHERPFYPSMDPQRMGAVVPSQD-GAP-SGPSGSGE--NVLERQRAQ--QYPYEGM--PP 419

Query: 421 PHAQYQQQ 428
           PH QYQQQ
Sbjct: 421 PHGQYQQQ 419

[Close]

BLAST of Carg12413 vs. TrEMBL
Match: tr|A0A2P4HCX6|A0A2P4HCX6_QUESU (Zinc finger ccch domain-containing protein 49 OS=Quercus suber OX=58331 GN=CFP56_59253 PE=4 SV=1)

HSP 1 Score: 720.7 bits (1859), Expect = 2.3e-204
Identity = 355/416 (85.34%), Postives = 375/416 (90.14%), Query Frame = 0


Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRDLEADGWERSDFPIICESCLGDNPYVRMTKAD+DKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRMLRDLEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE 120
           DAR+KK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFAE
Sbjct: 61  DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESS+GK R NDTI+KLQRTTPYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRANDTIMKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT 240
           HEMP TGELSQQNIKDRYYGVNDPVA+KLLNKAGEMPSLEPPEDESIRTLYVGGL+ RVT
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLNERVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAGELSNKLVVKGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMV  RACAFVTYTTREGAEKAA ELSNKLV+KGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVPLRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKPESEGSDEAK-QAAVAHSGMLPRAVISQQHSQLHPPGTHDQPQPMHXXXXXXXXX 360
           PQAPKPESEGSDEA+ Q AVAHSGMLPRAVISQQ SQL PPGT DQ QPMH         
Sbjct: 301 PQAPKPESEGSDEARQQPAVAHSGMLPRAVISQQQSQLQPPGTLDQNQPMH-YFNIPPPP 360

Query: 361 XXXXAFYPSMDPQRMGALISTHDSGAPHSGPASSTEARPGLEKQHQQGHQYPYHAM 416
               AFYPSMDPQRMGA+I +H+  +  +GP  S E + G EKQ QQGH YPY  M
Sbjct: 361 QQERAFYPSMDPQRMGAVIPSHEGAS--TGPTGSGENKSGPEKQ-QQGHHYPYQGM 412

The following BLAST results are available for this feature:

BLAST of Carg12413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948980.1	1.1e-245	100.00	zinc finger CCCH domain-containing protein 49 [Cucurbita moschata]	[more]
XP_023525004.1	2.0e-239	98.00	zinc finger CCCH domain-containing protein 40-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998053.1	2.4e-237	99.76	zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima] >XP_022998...	[more]
XP_022970525.1	3.0e-232	91.82	zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima]	[more]
XP_023520312.1	6.8e-232	94.63	zinc finger CCCH domain-containing protein 40-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12413 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29580.1	1.1e-172	80.59	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT1G07360.1	1.3e-168	84.19	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT5G07060.1	5.0e-120	53.73	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT5G04210.1	3.0e-24	44.06	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT1G49600.1	3.8e-11	33.93	RNA-binding protein 47A	[more]

BLAST of Carg12413 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6Z358\|C3H49_ORYSJ	6.1e-184	78.55	Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q5SNN4\|C3H40_ORYSJ	1.4e-183	75.00	Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9ZW36\|C3H25_ARATH	2.0e-171	80.59	Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9LNV5\|C3H4_ARATH	2.3e-167	84.19	Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9FL40\|C3H53_ARATH	9.0e-119	53.73	Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg12413 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGN2\|A0A0A0LGN2_CUCSA	3.2e-222	90.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036090 PE=4 SV=1	[more]
tr\|A0A1S3BU98\|A0A1S3BU98_CUCME	6.9e-217	89.60	zinc finger CCCH domain-containing protein 40-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A2I4G125\|A0A2I4G125_9ROSI	5.0e-207	86.82	zinc finger CCCH domain-containing protein 40-like OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A067KH26\|A0A067KH26_JATCU	7.9e-205	84.35	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12812 PE=4 SV=1	[more]
tr\|A0A2P4HCX6\|A0A2P4HCX6_QUESU	2.3e-204	85.34	Zinc finger ccch domain-containing protein 49 OS=Quercus suber OX=58331 GN=CFP56...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR035979	RBD_domain_sf
IPR039171	Cwc2/Slt11
IPR032297	Torus
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12413-RA	Carg12413-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 157..183 e-value: 8.7E-6 score: 35.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 157..184 score: 14.183
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 229..297 e-value: 4.4E-15 score: 66.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 230..287 e-value: 4.7E-12 score: 45.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 228..301 score: 15.255
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 148..199 e-value: 1.3E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 463..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..342
None	No IPR available	PANTHER	PTHR14089:SF6	PRE-MRNA-SPLICING FACTOR RBM22	coord: 1..376
None	No IPR available	CDD	cd12224	RRM_RBM22	coord: 227..300 e-value: 5.77693E-42 score: 144.325
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 208..318 e-value: 4.7E-18 score: 67.4
IPR032297	Torus domain	PFAM	PF16131	Torus	coord: 150..194 e-value: 3.4E-7 score: 30.8
IPR039171	Pre-mRNA-splicing factor Cwc2/Slt11	PANTHER	PTHR14089	CELL CYCLE CONTROL PROTEIN	coord: 1..376
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 213..304
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 159..182

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12413	CmoCh13G000790	Cucurbita moschata (Rifu)	carcmoB0594
Carg12413	CmoCh01G006790	Cucurbita moschata (Rifu)	carcmoB0596
Carg12413	Cp4.1LG20g08130	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12413	Cp4.1LG02g11470	Cucurbita pepo (Zucchini)	carcpeB0623

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12413	Carg20618	Silver-seed gourd	carcarB408

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12413	Silver-seed gourd	carcarB192
Carg12413	Silver-seed gourd	carcarB449
Carg12413	Cucumber (Gy14) v2	carcgybB0448
Carg12413	Cucumber (Gy14) v2	carcgybB0450
Carg12413	Cucumber (Gy14) v1	carcgyB0509
Carg12413	Cucumber (Gy14) v1	carcgyB0510
Carg12413	Cucurbita maxima (Rimu)	carcmaB0613
Carg12413	Cucurbita maxima (Rimu)	carcmaB0610
Carg12413	Cucurbita maxima (Rimu)	carcmaB0612
Carg12413	Cucurbita moschata (Rifu)	carcmoB0595
Carg12413	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12413	Cucurbita pepo (Zucchini)	carcpeB0621
Carg12413	Wild cucumber (PI 183967)	carcpiB0476
Carg12413	Wild cucumber (PI 183967)	carcpiB0478
Carg12413	Cucumber (Chinese Long) v2	carcuB0471
Carg12413	Cucumber (Chinese Long) v2	carcuB0473
Carg12413	Cucumber (Chinese Long) v3	carcucB0472
Carg12413	Cucumber (Chinese Long) v3	carcucB0475
Carg12413	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12413	Melon (DHL92) v3.5.1	carmeB0449
Carg12413	Melon (DHL92) v3.5.1	carmeB0450
Carg12413	Melon (DHL92) v3.6.1	carmedB0451
Carg12413	Melon (DHL92) v3.6.1	carmedB0453
Carg12413	Watermelon (Charleston Gray)	carwcgB0431
Carg12413	Watermelon (Charleston Gray)	carwcgB0436
Carg12413	Watermelon (97103) v1	carwmB0438
Carg12413	Watermelon (97103) v1	carwmB0440
Carg12413	Watermelon (97103) v2	carwmbB0463
Carg12413	Watermelon (97103) v2	carwmbB0467
Carg12413	Wax gourd	carwgoB0535