Carg12388 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAACCCATCCACGGGACAACTTCGAGGTATAGGTAAATTCACGTTTCTTGTTCCTTTGTAATTTGTGTTAAGCAAACCATACAGACAGGCTGAGAAGTGCCTTTCGTTTATTAAACAAATTCATTGAAAACTAACCGAGTTTAGGCATTTCCATACGTAGAGGGGGATTCTTCTTCCAAATGGTCGCCCGCACATTCGCCACCCGTGACAGGAAAGGACCGTGACCCTGAAGAGGATATCGATCACCATCAAAAGAAATCAGTTTTTGCGAAAGTGAAAGAAAAAGCAAAGAAACTCAGATATACTCTAAGCCACAAGAAGAAGCACGGCGAAGACGAGAATGCTACGCCGTCGTGGGGGTATAATTTGGATGAAAATGAAGAGGAAGAGGAGGACCATGTTGATGCTGAATATTTAGGAGCCCCAAGTAAGGTTGTTTGTGCTCATATCTTTCAAATCCTATTCTAAAATATGAACTTGTTTCATTTGCAGTGTATGAATCAGAGCTAGCACCAGAGGGCTGCAAAGAGAATGCCAGGCAGCATCCACGAGCCAATCCTGTGATTGCTGAGAATCATGTGTTAGCAAACAACATAAATCTTGCATCAGGACAAGATGAAAAACCTTTCACCTCGTCGGAAATGTTGTCTGAAATGAACGTCGAGTCGTCTCTTGGGAATATCAAAACAGGAACCGAAACTGCAGCTGCAAATACTACCATTAAGAGAATACAAGAAATGGAGGCTGCTAAACCTTCAAGTCCAAGCAAGACATTGACAGAAGCTGTAACTGAGAAGTTGGCACCTGTTTATTCCACTGTTACTGATGCTACTCATGCTCTTGCCTCAAAGATCCAAAGCCTCACGTTCTCCGCTCCATCGAACCCATCGGCCAATTCTTCACCGGCTACTCCAAAAGACGCTTTTTCCCCAGCAACACAGAAGAGGAGCTCTTCCCCAATGGATCTGCAAGCATCAAGACTTGGTAAAGGAACTGAGCAGATATGGGACAAAGGAGATTCAGTAAAGGAGTACCTGATGCAGAAGTTCGAGCCAGGTGAAGACGAGAGAGCGCTTTCTGAGGTGTTGTTCGATGCGCTGAGTCCAGGGAAACTGCCTGGAGATGTAGGTGTTGTGGAGAAGATGAGGGAGGCAGTAAGTTCCATGTTACAGGCTGATGAGGCACCACAGCCAGTGGCTACACATTTGGCTGCAAAATCTTTGCCACGGATTGAAACGGCACCACAACCAGTGGCTTCACAATTGCCTGCAAAATCTTTACCATTGGCTGAGAACTCACCAAAGCCAGTGGCTGCAACATCTTCATTGCGGGCTGAAACAACACCACAACCAGCAGCTGCAAAACAATCGTTACGAACCAAGAAGACACCAGAGCCCGTGGTTGCACGTTTTGTCACAAAACCTTCATTACCGGCTAAGGAGGCACCTCAAGCAATACTAGCACTACATTTGCCTGCAAAACCTTCATCACAGGCCAAGGAATCACCACAGGCACTCCTGGCTACACGCTTGGCTGCAAAGCCTTCATTACCAGAGGCAACACCACAACCAATAATTACACATTTAGGTTCAAAACATTCATCTAGCGCTCCTATCTTTACCACTACCCACATGGGTGAGTTACTACACCTTCAAATTTATACTTTTACAAATAATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGTGTGGAAACCTCTCTCTAGCAGACGCGTTCTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAACCTAAAAAGGACAATATCTGCTAGCGGTGGGCTTAGGTCGTTACAGATAATATAACAGAATAAAACAATATTTCTTTCTGATGCAGTGGCTGAGGAAGAAGACCTAGAAAGAATACTCCAAGCCAATTAA ATGCCAACCCATCCACGGGACAACTTCGAGGCATTTCCATACGTAGAGGGGGATTCTTCTTCCAAATGGTCGCCCGCACATTCGCCACCCGTGACAGGAAAGGACCGTGACCCTGAAGAGGATATCGATCACCATCAAAAGAAATCAGTTTTTGCGAAAGTGAAAGAAAAAGCAAAGAAACTCAGATATACTCTAAGCCACAAGAAGAAGCACGGCGAAGACGAGAATGCTACGCCGTCGTGGGGGTATAATTTGGATGAAAATGAAGAGGAAGAGGAGGACCATGTTGATGCTGAATATTTAGGAGCCCCAATGTATGAATCAGAGCTAGCACCAGAGGGCTGCAAAGAGAATGCCAGGCAGCATCCACGAGCCAATCCTGTGATTGCTGAGAATCATGTGTTAGCAAACAACATAAATCTTGCATCAGGACAAGATGAAAAACCTTTCACCTCGTCGGAAATGTTGTCTGAAATGAACGTCGAGTCGTCTCTTGGGAATATCAAAACAGGAACCGAAACTGCAGCTGCAAATACTACCATTAAGAGAATACAAGAAATGGAGGCTGCTAAACCTTCAAGTCCAAGCAAGACATTGACAGAAGCTGTAACTGAGAAGTTGGCACCTGTTTATTCCACTGTTACTGATGCTACTCATGCTCTTGCCTCAAAGATCCAAAGCCTCACGTTCTCCGCTCCATCGAACCCATCGGCCAATTCTTCACCGGCTACTCCAAAAGACGCTTTTTCCCCAGCAACACAGAAGAGGAGCTCTTCCCCAATGGATCTGCAAGCATCAAGACTTGGTAAAGGAACTGAGCAGATATGGGACAAAGGAGATTCAGTAAAGGAGTACCTGATGCAGAAGTTCGAGCCAGGTGAAGACGAGAGAGCGCTTTCTGAGGTGTTGTTCGATGCGCTGAGTCCAGGGAAACTGCCTGGAGATGTAGGTGTTGTGGAGAAGATGAGGGAGGCAGTAAGTTCCATGTTACAGGCTGATGAGGCACCACAGCCAGTGGCTACACATTTGGCTGCAAAATCTTTGCCACGGATTGAAACGGCACCACAACCAGTGGCTTCACAATTGCCTGCAAAATCTTTACCATTGGCTGAGAACTCACCAAAGCCAGTGGCTGCAACATCTTCATTGCGGGCTGAAACAACACCACAACCAGCAGCTGCAAAACAATCGTTACGAACCAAGAAGACACCAGAGCCCGTGGTTGCACGTTTTGTCACAAAACCTTCATTACCGGCTAAGGAGGCACCTCAAGCAATACTAGCACTACATTTGCCTGCAAAACCTTCATCACAGGCCAAGGAATCACCACAGGCACTCCTGGCTACACGCTTGGCTGCAAAGCCTTCATTACCAGAGGCAACACCACAACCAATAATTACACATTTAGGTTCAAAACATTCATCTAGCGCTCCTATCTTTACCACTACCCACATGGTGGCTGAGGAAGAAGACCTAGAAAGAATACTCCAAGCCAATTAA ATGCCAACCCATCCACGGGACAACTTCGAGGCATTTCCATACGTAGAGGGGGATTCTTCTTCCAAATGGTCGCCCGCACATTCGCCACCCGTGACAGGAAAGGACCGTGACCCTGAAGAGGATATCGATCACCATCAAAAGAAATCAGTTTTTGCGAAAGTGAAAGAAAAAGCAAAGAAACTCAGATATACTCTAAGCCACAAGAAGAAGCACGGCGAAGACGAGAATGCTACGCCGTCGTGGGGGTATAATTTGGATGAAAATGAAGAGGAAGAGGAGGACCATGTTGATGCTGAATATTTAGGAGCCCCAATGTATGAATCAGAGCTAGCACCAGAGGGCTGCAAAGAGAATGCCAGGCAGCATCCACGAGCCAATCCTGTGATTGCTGAGAATCATGTGTTAGCAAACAACATAAATCTTGCATCAGGACAAGATGAAAAACCTTTCACCTCGTCGGAAATGTTGTCTGAAATGAACGTCGAGTCGTCTCTTGGGAATATCAAAACAGGAACCGAAACTGCAGCTGCAAATACTACCATTAAGAGAATACAAGAAATGGAGGCTGCTAAACCTTCAAGTCCAAGCAAGACATTGACAGAAGCTGTAACTGAGAAGTTGGCACCTGTTTATTCCACTGTTACTGATGCTACTCATGCTCTTGCCTCAAAGATCCAAAGCCTCACGTTCTCCGCTCCATCGAACCCATCGGCCAATTCTTCACCGGCTACTCCAAAAGACGCTTTTTCCCCAGCAACACAGAAGAGGAGCTCTTCCCCAATGGATCTGCAAGCATCAAGACTTGGTAAAGGAACTGAGCAGATATGGGACAAAGGAGATTCAGTAAAGGAGTACCTGATGCAGAAGTTCGAGCCAGGTGAAGACGAGAGAGCGCTTTCTGAGGTGTTGTTCGATGCGCTGAGTCCAGGGAAACTGCCTGGAGATGTAGGTGTTGTGGAGAAGATGAGGGAGGCAGTAAGTTCCATGTTACAGGCTGATGAGGCACCACAGCCAGTGGCTACACATTTGGCTGCAAAATCTTTGCCACGGATTGAAACGGCACCACAACCAGTGGCTTCACAATTGCCTGCAAAATCTTTACCATTGGCTGAGAACTCACCAAAGCCAGTGGCTGCAACATCTTCATTGCGGGCTGAAACAACACCACAACCAGCAGCTGCAAAACAATCGTTACGAACCAAGAAGACACCAGAGCCCGTGGTTGCACGTTTTGTCACAAAACCTTCATTACCGGCTAAGGAGGCACCTCAAGCAATACTAGCACTACATTTGCCTGCAAAACCTTCATCACAGGCCAAGGAATCACCACAGGCACTCCTGGCTACACGCTTGGCTGCAAAGCCTTCATTACCAGAGGCAACACCACAACCAATAATTACACATTTAGGTTCAAAACATTCATCTAGCGCTCCTATCTTTACCACTACCCACATGGTGGCTGAGGAAGAAGACCTAGAAAGAATACTCCAAGCCAATTAA MPTHPRDNFEAFPYVEGDSSSKWSPAHSPPVTGKDRDPEEDIDHHQKKSVFAKVKEKAKKLRYTLSHKKKHGEDENATPSWGYNLDENEEEEEDHVDAEYLGAPMYESELAPEGCKENARQHPRANPVIAENHVLANNINLASGQDEKPFTSSEMLSEMNVESSLGNIKTGTETAAANTTIKRIQEMEAAKPSSPSKTLTEAVTEKLAPVYSTVTDATHALASKIQSLTFSAPSNPSANSSPATPKDAFSPATQKRSSSPMDLQASRLGKGTEQIWDKGDSVKEYLMQKFEPGEDERALSEVLFDALSPGKLPGDVGVVEKMREAVSSMLQADEAPQPVATHLAAKSLPRIETAPQPVASQLPAKSLPLAENSPKPVAATSSLRAETTPQPAAAKQSLRTKKTPEPVVARFVTKPSLPAKEAPQAILALHLPAKPSSQAKESPQALLATRLAAKPSLPEATPQPIITHLGSKHSSSAPIFTTTHMVAEEEDLERILQAN
BLAST of Carg12388 vs. NCBI nr
Match: XP_023524565.1 (nucleolar and coiled-body phosphoprotein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 679.1 bits (1751), Expect = 1.1e-191 Identity = 483/499 (96.79%), Postives = 484/499 (96.99%), Query Frame = 0
BLAST of Carg12388 vs. NCBI nr
Match: XP_022949059.1 (uncharacterized protein LOC111452523 [Cucurbita moschata]) HSP 1 Score: 605.9 bits (1561), Expect = 1.2e-169 Identity = 340/343 (99.13%), Postives = 341/343 (99.42%), Query Frame = 0
BLAST of Carg12388 vs. NCBI nr
Match: XP_022998667.1 (uncharacterized protein LOC111493251 [Cucurbita maxima]) HSP 1 Score: 458.0 bits (1177), Expect = 4.1e-125 Identity = 266/275 (96.73%), Postives = 269/275 (97.82%), Query Frame = 0
BLAST of Carg12388 vs. NCBI nr
Match: XP_016902102.1 (PREDICTED: proline-rich protein 36 [Cucumis melo]) HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106 Identity = 233/349 (66.76%), Postives = 262/349 (75.07%), Query Frame = 0
BLAST of Carg12388 vs. NCBI nr
Match: KGN65746.1 (hypothetical protein Csa_1G524680 [Cucumis sativus]) HSP 1 Score: 385.2 bits (988), Expect = 3.4e-103 Identity = 218/328 (66.46%), Postives = 245/328 (74.70%), Query Frame = 0
BLAST of Carg12388 vs. TAIR10
Match: AT3G46750.1 (unknown protein) HSP 1 Score: 140.6 bits (353), Expect = 2.7e-33 Identity = 115/328 (35.06%), Postives = 154/328 (46.95%), Query Frame = 0
BLAST of Carg12388 vs. TAIR10
Match: AT4G25580.1 (CAP160 protein) HSP 1 Score: 47.0 bits (110), Expect = 4.0e-05 Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of Carg12388 vs. TrEMBL
Match: tr|A0A1S4E1K0|A0A1S4E1K0_CUCME (proline-rich protein 36 OS=Cucumis melo OX=3656 GN=LOC103497136 PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 9.8e-107 Identity = 233/349 (66.76%), Postives = 262/349 (75.07%), Query Frame = 0
BLAST of Carg12388 vs. TrEMBL
Match: tr|A0A0A0M0K1|A0A0A0M0K1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G524680 PE=4 SV=1) HSP 1 Score: 385.2 bits (988), Expect = 2.3e-103 Identity = 218/328 (66.46%), Postives = 245/328 (74.70%), Query Frame = 0
BLAST of Carg12388 vs. TrEMBL
Match: tr|A0A2N9HV50|A0A2N9HV50_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43441 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63 Identity = 186/341 (54.55%), Postives = 222/341 (65.10%), Query Frame = 0
BLAST of Carg12388 vs. TrEMBL
Match: tr|A0A2R6QJ34|A0A2R6QJ34_ACTCH (Low-temperature-induced protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16438 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59 Identity = 157/349 (44.99%), Postives = 197/349 (56.45%), Query Frame = 0
BLAST of Carg12388 vs. TrEMBL
Match: tr|V4SCB2|V4SCB2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10029821mg PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 4.6e-56 Identity = 163/338 (48.22%), Postives = 205/338 (60.65%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|