Carg12295 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12295
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_074 : 130511 .. 130894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTTTAGAACCATGAAGAGGAAGATTGGTATCAGAGTGGTCGTCGAGAAGCTGCAAAGGAGGCTATCACGAAGTCGAAAATCGATCAATGGGATTCATAATGAGGATTTCGACATGACTAGGGTGCCGGAGGACGTGAAGGAAGGGCATTTTGCGGTGGTGGCGGTGGACGGGGAGGAGGCTAAACGATTCGTCGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGGAAGCAGCTGAGGAGTTTGGGTTTGATCATGAAGGTGCATTGGCAATTCCATGTCAGCCAAGTGAAGTTCAGAGGATTTTGGATGAGCAATGGAAGTTGGAGCTTAAAAGAGTCAGGGGAACATCTCAAGGCTAG

mRNA sequence

ATGGCTATGTTTAGAACCATGAAGAGGAAGATTGGTATCAGAGTGGTCGTCGAGAAGCTGCAAAGGAGGCTATCACGAAGTCGAAAATCGATCAATGGGATTCATAATGAGGATTTCGACATGACTAGGGTGCCGGAGGACGTGAAGGAAGGGCATTTTGCGGTGGTGGCGGTGGACGGGGAGGAGGCTAAACGATTCGTCGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGGAAGCAGCTGAGGAGTTTGGGTTTGATCATGAAGGTGCATTGGCAATTCCATGTCAGCCAAGTGAAGTTCAGAGGATTTTGGATGAGCAATGGAAGTTGGAGCTTAAAAGAGTCAGGGGAACATCTCAAGGCTAG

Coding sequence (CDS)

ATGGCTATGTTTAGAACCATGAAGAGGAAGATTGGTATCAGAGTGGTCGTCGAGAAGCTGCAAAGGAGGCTATCACGAAGTCGAAAATCGATCAATGGGATTCATAATGAGGATTTCGACATGACTAGGGTGCCGGAGGACGTGAAGGAAGGGCATTTTGCGGTGGTGGCGGTGGACGGGGAGGAGGCTAAACGATTCGTCGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGGAAGCAGCTGAGGAGTTTGGGTTTGATCATGAAGGTGCATTGGCAATTCCATGTCAGCCAAGTGAAGTTCAGAGGATTTTGGATGAGCAATGGAAGTTGGAGCTTAAAAGAGTCAGGGGAACATCTCAAGGCTAG

Protein sequence

MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKLELKRVRGTSQG

Homology

[Close]

BLAST of Carg12295 vs. NCBI nr
Match: XP_022998661.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 1.0e-59
Identity = 118/127 (92.91%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDG 60
           MAMFRTMKRK+GI+ VVEKLQRRLSRSRKS NGIHNEDFD TRVPEDVKEGHFAVVAVDG
Sbjct: 1   MAMFRTMKRKMGIKAVVEKLQRRLSRSRKSNNGIHNEDFDTTRVPEDVKEGHFAVVAVDG 60

Query: 61  EEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKLELKR 120
           EEAKRF+VPLSCLTHPMFLRLLEEAAEE+GFDHEGALAIPCQPSEVQRILDEQWKLELKR
Sbjct: 61  EEAKRFIVPLSCLTHPMFLRLLEEAAEEYGFDHEGALAIPCQPSEVQRILDEQWKLELKR 120

Query: 121 VRGTSQG 128
           V  TSQG
Sbjct: 121 VGETSQG 127

[Close]

BLAST of Carg12295 vs. NCBI nr
Match: XP_022948822.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata])

HSP 1 Score: 231.9 bits (590), Expect = 1.2e-57
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDG 60
           MAMFRTMKRKIGIR VVEKLQRRLSRSRKSINGIHNEDFD TRVPEDVKEGHFAVV VDG
Sbjct: 1   MAMFRTMKRKIGIRAVVEKLQRRLSRSRKSINGIHNEDFDTTRVPEDVKEGHFAVVVVDG 60

Query: 61  EEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKLELKR 120
           EEAKRFVVPLSCLTHPMFLRLLEEAAEE+GFDHEGALAIPC+PSEVQRILDEQWKLELK+
Sbjct: 61  EEAKRFVVPLSCLTHPMFLRLLEEAAEEYGFDHEGALAIPCKPSEVQRILDEQWKLELKK 120

[Close]

BLAST of Carg12295 vs. NCBI nr
Match: XP_023524585.1 (auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDG 60
           MAMFRT+KRKIGIR VV KLQRRLSRSRK INGIHNEDFD TRVPEDVKEGHFAVVAVDG
Sbjct: 1   MAMFRTVKRKIGIRAVVGKLQRRLSRSRKPINGIHNEDFDTTRVPEDVKEGHFAVVAVDG 60

Query: 61  EEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKLELKR 120
           EEAKRFVVPLSCLTHPMFLRLLEEAAEE+GFDHEGALAIPCQPSEVQRILDEQWKLELK+
Sbjct: 61  EEAKRFVVPLSCLTHPMFLRLLEEAAEEYGFDHEGALAIPCQPSEVQRILDEQWKLELKK 120

[Close]

BLAST of Carg12295 vs. NCBI nr
Match: XP_004147286.1 (PREDICTED: uncharacterized protein LOC101219191 [Cucumis sativus] >KGN64798.1 hypothetical protein Csa_1G103250 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 5.4e-45
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDF----DMTRVPEDVKEGHFAVV 60
           MA  +TMK+K  I+VVVEKLQ+ LSR RK ING +NEDF    D T VPEDVKEGHFAVV
Sbjct: 1   MAKSKTMKKKNSIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTAVPEDVKEGHFAVV 60

Query: 61  AVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKL 120
           AVDG+E KRFVVPLSCLTHPMFLRLLE+AAEE+GFDHEGAL IPCQPSEV++IL EQWKL
Sbjct: 61  AVDGKEPKRFVVPLSCLTHPMFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAEQWKL 120

[Close]

BLAST of Carg12295 vs. NCBI nr
Match: XP_008463143.1 (PREDICTED: auxin-responsive protein SAUR72-like [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 5.9e-44
Identity = 94/124 (75.81%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDF----DMTRVPEDVKEGHFAVV 60
           MA  +TMK+K  I+VVVEKLQ+ LSR RK ING +NEDF    D T VPEDVKEGHFAVV
Sbjct: 1   MAKSKTMKKKNSIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTAVPEDVKEGHFAVV 60

Query: 61  AVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKL 120
           AVDGE+ +RFVVPLSCLTHP FLRLLE+AAEE+GFDHEGAL IPCQPSEV++IL EQWKL
Sbjct: 61  AVDGEKPRRFVVPLSCLTHPTFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAEQWKL 120

[Close]

BLAST of Carg12295 vs. TAIR10
Match: AT2G28085.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSR--KSINGIHNEDFDMTRVPEDVKEGHFAVVAV 60
           M    + K+K+G  V ++ +  RL + +   S      E++    VP+DVKEGHFAV+AV
Sbjct: 6   MITIESPKKKMGGIVKLKNVVERLVQIKGFSSAKKPCPEEYGRDCVPKDVKEGHFAVIAV 65

Query: 61  DG--EEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQW 115
           DG  E  +RFVVPL  L HPMF +LLE+A EE+GF H+GAL +PC+PS ++ IL EQW
Sbjct: 66  DGYHEPTQRFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQW 123

[Close]

BLAST of Carg12295 vs. TAIR10
Match: AT3G09870.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-19
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 4   FRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDGEEA 63
           F+   RK+ I  +  +  +R+    +       E    + +P DVKEGH AV+AV GE  
Sbjct: 5   FKIFMRKLQICCLFTRFSKRVGNYCE----FEEEGNAASMIPSDVKEGHVAVIAVKGERI 64

Query: 64  KRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRIL 111
           KRFV+ L  L  P FLRLLE+A EEFGF   G L IPCQP EVQ+IL
Sbjct: 65  KRFVLELEELNKPEFLRLLEQAREEFGFQPRGPLTIPCQPEEVQKIL 107

[Close]

BLAST of Carg12295 vs. TAIR10
Match: AT2G21220.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 36  NEDFDMTRVPEDVKEGHFAVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEG 95
           N+ +D   +P DV +GHF V    GE+  R++VP+S LTHP F  LL++A EEFGF+H+ 
Sbjct: 28  NQCYDEDGLPVDVPKGHFPVYV--GEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDM 87

Query: 96  ALAIPCQ 103
            L IPC+
Sbjct: 88  GLTIPCE 92

[Close]

BLAST of Carg12295 vs. TAIR10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-13
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 10  KIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDGEEAKRFVVP 69
           K+    +++++ +R S   K   G ++ED     +P DV +GHF V    GE   R++VP
Sbjct: 9   KLTQTAMLKQILKRCSSLGKKNGGGYDEDC----LPLDVPKGHFPVYV--GENRSRYIVP 68

Query: 70  LSCLTHPMFLRLLEEAAEEFGFDHEGALAIPC 102
           +S LTHP F  LL+ A EEFGFDH+  L IPC
Sbjct: 69  ISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPC 94

[Close]

BLAST of Carg12295 vs. TAIR10
Match: AT4G38860.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 39  FDMTRVPEDVKEGHFAVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHE-GAL 98
           +D   +P DV +GHF V    GE+  R++VP+S LTHP FL LL++A EEFGF H+ G L
Sbjct: 31  YDEEGLPLDVPKGHFPVYV--GEKRTRYIVPISFLTHPEFLILLQQAEEEFGFRHDMGGL 90

Query: 99  AIPCQ 103
            IPC+
Sbjct: 91  TIPCE 93

[Close]

BLAST of Carg12295 vs. Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-12
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 10  KIGIRVVVEKLQRRLSRSRKSINGIHNEDFDMTRVPEDVKEGHFAVVAVDGEEAKRFVVP 69
           K+    +++++ +R S   K   G ++ED     +P DV +GHF V    GE   R++VP
Sbjct: 9   KLTQTAMLKQILKRCSSLGKKNGGGYDEDC----LPLDVPKGHFPVYV--GENRSRYIVP 68

Query: 70  LSCLTHPMFLRLLEEAAEEFGFDHEGALAIPC 102
           +S LTHP F  LL+ A EEFGFDH+  L IPC
Sbjct: 69  ISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPC 94

[Close]

BLAST of Carg12295 vs. Swiss-Prot
Match: sp|P0DKL1|SAU50_HELAN (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-12
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 33  GIHNEDFDMTRVPEDVKEGHFAVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFD 92
           G +N+D   + +P DV +GHF V    GE   R++VP+SCL HP F  LL+ + EEFGF+
Sbjct: 27  GKNNDD---SGLPNDVPKGHFVVYV--GERRNRYIVPISCLDHPTFQDLLQRSEEEFGFN 86

Query: 93  HEGALAIPCQ 103
           H+  + IPCQ
Sbjct: 87  HDMGIIIPCQ 91

[Close]

BLAST of Carg12295 vs. Swiss-Prot
Match: sp|Q9SL45|SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLS--RSRKSING-IHNEDFDMTRVPEDVKEGHFAVVA 60
           MA+ R+ K        ++++ +R S  R  K++NG  +N++ D+   P+DV +GHF V  
Sbjct: 1   MAIKRSSKATSSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDL---PQDVPKGHFPVYV 60

Query: 61  VDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPC 102
             G    R++VP+S L H  F  LL  A EEFGFDH+  L IPC
Sbjct: 61  --GPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPC 99

[Close]

BLAST of Carg12295 vs. Swiss-Prot
Match: sp|Q9ZUZ3|SAU32_ARATH (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 46  EDVKEGHFAV-VAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPS 105
           +DV +G  A+ V   GEE +RF+VP+    HP+F++LL+EA +E+GFD +G + IPC   
Sbjct: 22  KDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVE 81

Query: 106 E---VQRILD 112
           E   VQ ++D
Sbjct: 82  EFRYVQALID 91

[Close]

BLAST of Carg12295 vs. Swiss-Prot
Match: sp|P33082|AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 47  DVKEGHFAVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHE-GALAIPCQPSE 106
           D  +G+ AV    GE+ KRFV+P+S +  P F  LL +A EEFG+DH  G L IPC    
Sbjct: 16  DAPKGYLAVYV--GEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEV 75

Query: 107 VQRI 110
            QRI
Sbjct: 76  FQRI 77

[Close]

BLAST of Carg12295 vs. TrEMBL
Match: tr|A0A0A0LSM9|A0A0A0LSM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G103250 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.5e-45
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDF----DMTRVPEDVKEGHFAVV 60
           MA  +TMK+K  I+VVVEKLQ+ LSR RK ING +NEDF    D T VPEDVKEGHFAVV
Sbjct: 1   MAKSKTMKKKNSIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTAVPEDVKEGHFAVV 60

Query: 61  AVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKL 120
           AVDG+E KRFVVPLSCLTHPMFLRLLE+AAEE+GFDHEGAL IPCQPSEV++IL EQWKL
Sbjct: 61  AVDGKEPKRFVVPLSCLTHPMFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAEQWKL 120

[Close]

BLAST of Carg12295 vs. TrEMBL
Match: tr|A0A1S3CK34|A0A1S3CK34_CUCME (auxin-responsive protein SAUR72-like OS=Cucumis melo OX=3656 GN=LOC103501357 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.9e-44
Identity = 94/124 (75.81%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MAMFRTMKRKIGIRVVVEKLQRRLSRSRKSINGIHNEDF----DMTRVPEDVKEGHFAVV 60
           MA  +TMK+K  I+VVVEKLQ+ LSR RK ING +NEDF    D T VPEDVKEGHFAVV
Sbjct: 1   MAKSKTMKKKNSIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTAVPEDVKEGHFAVV 60

Query: 61  AVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKL 120
           AVDGE+ +RFVVPLSCLTHP FLRLLE+AAEE+GFDHEGAL IPCQPSEV++IL EQWKL
Sbjct: 61  AVDGEKPRRFVVPLSCLTHPTFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAEQWKL 120

[Close]

BLAST of Carg12295 vs. TrEMBL
Match: tr|F6GWA1|F6GWA1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00390 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 78/124 (62.90%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MAMFR--TMKRKIGI---RVVVEKLQRRLSRSRKSINGIHN--EDFDMTRVPEDVKEGHF 60
           MA FR  + K+K GI   ++VVEKLQ+ LS  +KS +   +  E  D   VP DVKEGHF
Sbjct: 1   MAKFRSNSAKKKNGIVRLKIVVEKLQKSLSLGKKSASDYDDLEEVIDSAYVPPDVKEGHF 60

Query: 61  AVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQ 118
           AV+AVDG+E KRFVVPL+ LTHP FLRLLE+AAEE+GFDHEGAL IPC+PSE++R+L EQ
Sbjct: 61  AVIAVDGQEPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIPCRPSELERLLAEQ 120

[Close]

BLAST of Carg12295 vs. TrEMBL
Match: tr|A0A2N9EYY9|A0A2N9EYY9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7656 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.5e-31
Identity = 75/124 (60.48%), Postives = 94/124 (75.81%), Query Frame = 0


Query: 1   MAMFRTMKRK----IGIRVVVEKLQRRLSRSRKSINGIHNEDFDM---TRVPEDVKEGHF 60
           MA  +T  +K    + +++VV+KLQR L   RKS +     D D+   T VPEDVKEGHF
Sbjct: 1   MAKRKTNSKKRNSIVKLKIVVKKLQRSLLLGRKSSSYRDEYDQDVSDTTSVPEDVKEGHF 60

Query: 61  AVVAVDGEEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQ 118
           +V+AVDG E KRFVVPLS LTHP F+RLLE+AAEE+GFDHEGAL+IPC+PSE++RIL EQ
Sbjct: 61  SVIAVDGNEPKRFVVPLSYLTHPTFVRLLEQAAEEYGFDHEGALSIPCRPSELERILGEQ 120

[Close]

BLAST of Carg12295 vs. TrEMBL
Match: tr|D7SND5|D7SND5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00400 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 8   KRKIGI---RVVVEKLQRRLSRSRKSINGIHNEDF----DMTRVPEDVKEGHFAVVAVDG 67
           KRK GI   ++VVEKLQ+ L   RKS     N++F    D T VP DVKEGHFAV+AVD 
Sbjct: 10  KRKNGIVKLKIVVEKLQKSLLLGRKS--ACENDEFKDVSDSTYVPADVKEGHFAVIAVDD 69

Query: 68  EEAKRFVVPLSCLTHPMFLRLLEEAAEEFGFDHEGALAIPCQPSEVQRILDEQWKLE 118
           +E KRFVVPL+ LTHP FL+LLE+AAEE+GFDHEGAL IPC+PSE++ IL EQW+ E
Sbjct: 70  DEPKRFVVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESILAEQWQKE 124

The following BLAST results are available for this feature:

BLAST of Carg12295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998661.1	1.0e-59	92.91	auxin-responsive protein SAUR50-like [Cucurbita maxima]	[more]
XP_022948822.1	1.2e-57	95.00	auxin-responsive protein SAUR50-like [Cucurbita moschata]	[more]
XP_023524585.1	1.0e-56	94.17	auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]	[more]
XP_004147286.1	5.4e-45	77.42	PREDICTED: uncharacterized protein LOC101219191 [Cucumis sativus] >KGN64798.1 hy...	[more]
XP_008463143.1	5.9e-44	75.81	PREDICTED: auxin-responsive protein SAUR72-like [Cucumis melo]	[more]

BLAST of Carg12295 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28085.1	3.1e-23	48.31	SAUR-like auxin-responsive protein family	[more]
AT3G09870.1	3.6e-19	46.73	SAUR-like auxin-responsive protein family	[more]
AT2G21220.1	1.0e-13	49.25	SAUR-like auxin-responsive protein family	[more]
AT4G34760.1	2.9e-13	42.39	SAUR-like auxin-responsive protein family	[more]
AT4G38860.1	1.1e-12	52.31	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg12295 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65695\|SAU50_ARATH	5.3e-12	42.39	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
sp\|P0DKL1\|SAU50_HELAN	6.9e-12	47.14	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
sp\|Q9SL45\|SAU10_ARATH	1.7e-10	39.42	Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR1...	[more]
sp\|Q9ZUZ3\|SAU32_ARATH	2.2e-10	44.29	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
sp\|P33082\|AXX15_SOYBN	1.6e-08	48.44	Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Carg12295 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSM9\|A0A0A0LSM9_CUCSA	3.5e-45	77.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G103250 PE=4 SV=1	[more]
tr\|A0A1S3CK34\|A0A1S3CK34_CUCME	3.9e-44	75.81	auxin-responsive protein SAUR72-like OS=Cucumis melo OX=3656 GN=LOC103501357 PE=...	[more]
tr\|F6GWA1\|F6GWA1_VITVI	1.0e-31	62.90	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00390 PE=4 SV=...	[more]
tr\|A0A2N9EYY9\|A0A2N9EYY9_FAGSY	6.5e-31	60.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7656 PE=4 SV=1	[more]
tr\|D7SND5\|D7SND5_VITVI	5.5e-30	63.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12295-RA	Carg12295-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 12..118
None	No IPR available	PANTHER	PTHR31374:SF16	AUXIN-RESPONSIVE FAMILY PROTEIN	coord: 12..118
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 27..110 e-value: 4.0E-22 score: 78.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12295	Cla005087	Watermelon (97103) v1	carwmB0440
Carg12295	Csa1G103250	Cucumber (Chinese Long) v2	carcuB0472
Carg12295	MELO3C004966	Melon (DHL92) v3.5.1	carmeB0449
Carg12295	ClCG03G002720	Watermelon (Charleston Gray)	carwcgB0436
Carg12295	CSPI01G13240	Wild cucumber (PI 183967)	carcpiB0477
Carg12295	Cucsa.207720	Cucumber (Gy14) v1	carcgyB0511
Carg12295	CmaCh01G005180	Cucurbita maxima (Rimu)	carcmaB0613
Carg12295	CmaCh13G002350	Cucurbita maxima (Rimu)	carcmaB0611
Carg12295	CmoCh13G002360	Cucurbita moschata (Rifu)	carcmoB0594
Carg12295	Lsi03G000070	Bottle gourd (USVL1VR-Ls)	carlsiB404
Carg12295	Cp4.1LG20g07120	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12295	Cp4.1LG02g12710	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12295	CsGy1G013350	Cucumber (Gy14) v2	carcgybB0449
Carg12295	MELO3C004966.2	Melon (DHL92) v3.6.1	carmedB0452
Carg12295	CsaV3_1G013410	Cucumber (Chinese Long) v3	carcucB0474
Carg12295	Cla97C03G053750	Watermelon (97103) v2	carwmbB0467
Carg12295	Bhi08G000213	Wax gourd	carwgoB0532

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12295	Carg02578	Silver-seed gourd	carcarB448
Carg12295	Carg26250	Silver-seed gourd	carcarB450

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12295	Watermelon (Charleston Gray)	carwcgB0432
Carg12295	Watermelon (97103) v1	carwmB0439
Carg12295	Wax gourd	carwgoB0528
Carg12295	Cucumber (Gy14) v2	carcgybB0451
Carg12295	Cucurbita moschata (Rifu)	carcmoB0596
Carg12295	Wild cucumber (PI 183967)	carcpiB0479
Carg12295	Cucumber (Chinese Long) v2	carcuB0474
Carg12295	Cucumber (Chinese Long) v3	carcucB0476