Carg12285 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12285
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	p-loop NTPase domain-containing protein LPA1 homolog 1-like
Location	Cucurbita_argyrosperma_scaffold_074 : 68003 .. 69762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAACAAAACTCGAAAATCAAAATCCATGGAGGTTTTGCGCCGAACCATGGCAACGACTGAGCCAAATCCAGAGCTCGCTTCTTTTGGTCTTTAATGGTGTGAATACGGCTTCGTTTCTGTCCAATGCGTGATCGTTATGTCGTTTTCATTGCCCTAGGCCTCTTCTTCAATCTATAGTTGAGATTTGATTCCATACTTTTTCCTTTTTGCTTGCGACGTCTTCAGCCTTTTGATTCACTACGGATTTTGCATTTTTGCAGGTTTGACTTGCTGTTTCTCTATTTTTTTGTGTATCCACATTTTGTTGTGTTGTTGTTATAATTTTTTGGCGTTGATTTGATGCAATGACGTTCCGTCCATCGCTTTCTTCGTTTGTTTATTGTTTGATCGTGATAGCCGCTCTTCCGATTTTTTTATTTTTTAATTGGACATCTGAGTGAGGGTTTATCTTCTTTAAATTAGTATAGATGCAATCATGGAAATTGGTTTACTACGGACAGGAATGGCGGAGGTTGCGAAATTGCTGTACATAGTTGTGGTGGATGAGGGAGAAAAGCTAGAGAAGGAGAAAGGATCTTTCAGGTACACTCGTCATGTTCTACAGAGTACTCTACAGCTTATGGGATGCAAACCGCGACATGCTTTCAAGGTATGCTTGTTTTCTTTTTTCAATCATACTTCCGGATTCCATGCGAAATCCTCTGGAAGATTTTCTAATGTTTTTTTAGCAGTTCAATTTTTCTATATTTTCTCATTTTAGAGGTTTGAGTTTTATGAAAAGAAGTTCATCTTCAATGGGCTTGTTCAGCTCTGTGATTGCAGCATTACCTGGGAATAATTTCGTATGAACTTGGAGTCTAGTTGTTACCATGATAATCCTGCGTTATATTGTTGTATAGATTAAGTAATGGGAATAAACTTTCTAATATGGCCTGCAAGGAAATGGATGAGAAATTCAAACTGATGGTCACCCAAATCTAATATTCTTGTTTAATCATTGAGATTGTCTGATAATAAACATGTTTCTGATAGGAAGCTGAACATAAGATTGAAGTATCTTATGTCAGGTTCCAATCAGTTTCACGGCTTAGAGATAGTAGATTGTGAATGCCCATTCACCCATTATACCTTTGTCAGGTTTTTTCTTTTGATTTTCTCTACCTTTGTTTCACTCCTTGAGCAAATCTTTTTATTTATTTGCGTTCAAGATGTTGGGTGGATTGGCAATTGGCGTTTCCTTAATTTCCTTTGTTGTTATGTTTTTTCTGTTTTTTCTACAATCTTTTCTTTTTGTTGTTTCCATTTGAAAGCCATACATCCTTCACACAAATCGAATGAAATTTCTGCTGAAAGAGTTTGGTTTTTTCTGAATGTGCTCTTTTGTGGTCAGATAAGCAAATGGGTATTTGAATTGATAAGAAAGGAAGCTTCGACTGATGTTTTTCTCCCTGAAGAGAGTGACATATTGGGATTGGTTTCTTTGGTTGGACAAGGACAAAGTGAAAAAGATACTGATTATTACCATAATTGTTTTGATGGAAATGAGATTTTTGAAAATTTGGGTTCAAGAGAAGGTGATAATAGCAAGAATATTCCATTCGAGTTATATAAAAAAAGCAGGACTGCTGTTGTTAAAAGAGAAACTTTCCTAGATGTTATTTGTGATTCTCTGGCTAAGTACAAGTACGTCGGTCCCAACCAGAGGGCAGACCTGATCTTGGCATGCAGGTACTTAAAACATCTCAATTTTTAG

mRNA sequence

AAAAAGAAAACAAAACTCGAAAATCAAAATCCATGGAGGTTTTGCGCCGAACCATGGCAACGACTGAGCCAAATCCAGAGCTCGCTTCTTTTGGTCTTTAATGGTGTGAATACGGCTTCGTTTCTGTCCAATGCGTGATCGTTATGTCGTTTTCATTGCCCTAGGCCTCTTCTTCAATCTATAGTTTGACTTGCTGTTTCTCTATTTTTTTGTGTATCCACATTTTGTTGTGTTGTTGTTATAATTTTTTGGCGTTGATTTGATGCAATGACGTTCCGTCCATCGCTTTCTTCGTTTGTTTATTGTTTGATCGTGATAGCCGCTCTTCCGATTTTTTTATTTTTTAATTGGACATCTGAGTGAGGGTTTATCTTCTTTAAATTAGTATAGATGCAATCATGGAAATTGGTTTACTACGGACAGGAATGGCGGAGGTTGCGAAATTGCTGTACATAGTTGTGGTGGATGAGGGAGAAAAGCTAGAGAAGGAGAAAGGATCTTTCAGGTACACTCGTCATGTTCTACAGAGTACTCTACAGCTTATGGGATGCAAACCGCGACATGCTTTCAAGATAAGCAAATGGGTATTTGAATTGATAAGAAAGGAAGCTTCGACTGATGTTTTTCTCCCTGAAGAGAGTGACATATTGGGATTGGTTTCTTTGGTTGGACAAGGACAAAGTGAAAAAGATACTGATTATTACCATAATTGTTTTGATGGAAATGAGATTTTTGAAAATTTGGGTTCAAGAGAAGGTGATAATAGCAAGAATATTCCATTCGAGTTATATAAAAAAAGCAGGACTGCTGTTGTTAAAAGAGAAACTTTCCTAGATGTTATTTGTGATTCTCTGGCTAAGTACAAGTACGTCGGTCCCAACCAGAGGGCAGACCTGATCTTGGCATGCAGGTACTTAAAACATCTCAATTTTTAG

Coding sequence (CDS)

ATGGAAATTGGTTTACTACGGACAGGAATGGCGGAGGTTGCGAAATTGCTGTACATAGTTGTGGTGGATGAGGGAGAAAAGCTAGAGAAGGAGAAAGGATCTTTCAGGTACACTCGTCATGTTCTACAGAGTACTCTACAGCTTATGGGATGCAAACCGCGACATGCTTTCAAGATAAGCAAATGGGTATTTGAATTGATAAGAAAGGAAGCTTCGACTGATGTTTTTCTCCCTGAAGAGAGTGACATATTGGGATTGGTTTCTTTGGTTGGACAAGGACAAAGTGAAAAAGATACTGATTATTACCATAATTGTTTTGATGGAAATGAGATTTTTGAAAATTTGGGTTCAAGAGAAGGTGATAATAGCAAGAATATTCCATTCGAGTTATATAAAAAAAGCAGGACTGCTGTTGTTAAAAGAGAAACTTTCCTAGATGTTATTTGTGATTCTCTGGCTAAGTACAAGTACGTCGGTCCCAACCAGAGGGCAGACCTGATCTTGGCATGCAGGTACTTAAAACATCTCAATTTTTAG

Protein sequence

MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACRYLKHLNF

Homology

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BLAST of Carg12285 vs. NCBI nr
Match: XP_022948849.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita moschata] >XP_022948850.1 P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita moschata] >XP_022948851.1 P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 344.7 bits (883), Expect = 1.8e-91
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS 60
           MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS
Sbjct: 1   MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS 60

Query: 61  KWVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREG 120
           KWVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREG
Sbjct: 61  KWVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREG 120

Query: 121 DNSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           DNSKNIPFELYKKSRTAVVKRETFLDVICDSLA YKYVGPNQRADLILACR
Sbjct: 121 DNSKNIPFELYKKSRTAVVKRETFLDVICDSLATYKYVGPNQRADLILACR 171

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BLAST of Carg12285 vs. NCBI nr
Match: XP_022998859.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita maxima] >XP_022998860.1 P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita maxima] >XP_022998861.1 P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 340.1 bits (871), Expect = 4.5e-90
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS 60
           MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS
Sbjct: 1   MEIGLLRTGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKIS 60

Query: 61  KWVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREG 120
           KWVFELIRKEASTDVFLPE+SDILGLVSLVGQGQSE DTDYYHNCFDG EIF+NLGSREG
Sbjct: 61  KWVFELIRKEASTDVFLPEKSDILGLVSLVGQGQSENDTDYYHNCFDGKEIFDNLGSREG 120

Query: 121 DNSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           DNSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR
Sbjct: 121 DNSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 171

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BLAST of Carg12285 vs. NCBI nr
Match: XP_023523962.1 (LOW QUALITY PROTEIN: P-loop NTPase domain-containing protein LPA1 homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 4.6e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK
Sbjct: 1   MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE 129
           EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE
Sbjct: 61  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE 120

Query: 130 LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR
Sbjct: 121 LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 162

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BLAST of Carg12285 vs. NCBI nr
Match: XP_022948852.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 327.8 bits (839), Expect = 2.3e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK
Sbjct: 1   MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE 129
           EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE
Sbjct: 61  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE 120

Query: 130 LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           LYKKSRTAVVKRETFLDVICDSLA YKYVGPNQRADLILACR
Sbjct: 121 LYKKSRTAVVKRETFLDVICDSLATYKYVGPNQRADLILACR 162

[Close]

BLAST of Carg12285 vs. NCBI nr
Match: XP_022998862.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 5.7e-85
Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK
Sbjct: 1   MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFE 129
           EASTDVFLPE+SDILGLVSLVGQGQSE DTDYYHNCFDG EIF+NLGSREGDNSKNIPFE
Sbjct: 61  EASTDVFLPEKSDILGLVSLVGQGQSENDTDYYHNCFDGKEIFDNLGSREGDNSKNIPFE 120

Query: 130 LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR
Sbjct: 121 LYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 162

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BLAST of Carg12285 vs. TAIR10
Match: AT5G60760.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 10  MAEVAKLLYIVVV---DEGEKLEKE-----KGSFRYTRHVLQSTLQLMGCKPRHAFKISK 69
           M E  K++YIVVV   D  E +E++     K SFRYTR VLQSTLQLMGCK RHAFKIS+
Sbjct: 1   MTETTKVMYIVVVDGTDTAETVEEDGTGTWKDSFRYTRPVLQSTLQLMGCKARHAFKISR 60

Query: 70  WVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGD 129
            VFELIR E S  +  P  S      S   + Q   D     N    N++  +L + + D
Sbjct: 61  RVFELIRSEGSL-ILSPSLSP---SHSKESEFQKTGDASACANVEKANKV-NSLATDDVD 120

Query: 130 NSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
            SK+ PFE+YK+  T VV RE F++V+CD+LA+YKYVG +QRADLIL+CR
Sbjct: 121 KSKSKPFEVYKRRTTVVVSREIFVNVVCDALAEYKYVGHDQRADLILSCR 165

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BLAST of Carg12285 vs. TAIR10
Match: AT3G45090.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 7.5e-31
Identity = 79/163 (48.47%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 10  MAEVAKLLYI-VVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIR 69
           M E  K+LYI               SFRYTR VLQSTLQLMGCK RHAFKIS+ VFELIR
Sbjct: 2   MTEATKVLYIXXXXXXXXXXXXXXXSFRYTRPVLQSTLQLMGCKARHAFKISRRVFELIR 61

Query: 70  KEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPF 129
            E S +   PE          VG     +      NC         + + + D +K+ PF
Sbjct: 62  SEGSCNT-SPENGKEPEFAKEVGGSTCVEKL----NCL--------VVAGDVDKNKSKPF 121

Query: 130 ELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           E+YK+  T VV RE F+DV+CD+LA+YKYVG +QRADLILACR
Sbjct: 122 EMYKRRTTVVVSREIFVDVVCDALAEYKYVGRDQRADLILACR 151

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BLAST of Carg12285 vs. Swiss-Prot
Match: sp|Q9FJH9|LPAH1_ARATH (P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g60760 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-33
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 10  MAEVAKLLYIVVV---DEGEKLEKE-----KGSFRYTRHVLQSTLQLMGCKPRHAFKISK 69
           M E  K++YIVVV   D  E +E++     K SFRYTR VLQSTLQLMGCK RHAFKIS+
Sbjct: 1   MTETTKVMYIVVVDGTDTAETVEEDGTGTWKDSFRYTRPVLQSTLQLMGCKARHAFKISR 60

Query: 70  WVFELIRKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGD 129
            VFELIR E S  +  P  S      S   + Q   D     N    N++  +L + + D
Sbjct: 61  RVFELIRSEGSL-ILSPSLSP---SHSKESEFQKTGDASACANVEKANKV-NSLATDDVD 120

Query: 130 NSKNIPFELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
            SK+ PFE+YK+  T VV RE F++V+CD+LA+YKYVG +QRADLIL+CR
Sbjct: 121 KSKSKPFEVYKRRTTVVVSREIFVNVVCDALAEYKYVGHDQRADLILSCR 165

[Close]

BLAST of Carg12285 vs. Swiss-Prot
Match: sp|Q93ZS1|LPAH2_ARATH (P-loop NTPase domain-containing protein LPA1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g45090 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 79/163 (48.47%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 10  MAEVAKLLYI-VVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIR 69
           M E  K+LYI               SFRYTR VLQSTLQLMGCK RHAFKIS+ VFELIR
Sbjct: 2   MTEATKVLYIXXXXXXXXXXXXXXXSFRYTRPVLQSTLQLMGCKARHAFKISRRVFELIR 61

Query: 70  KEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPF 129
            E S +   PE          VG     +      NC         + + + D +K+ PF
Sbjct: 62  SEGSCNT-SPENGKEPEFAKEVGGSTCVEKL----NCL--------VVAGDVDKNKSKPF 121

Query: 130 ELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           E+YK+  T VV RE F+DV+CD+LA+YKYVG +QRADLILACR
Sbjct: 122 EMYKRRTTVVVSREIFVDVVCDALAEYKYVGRDQRADLILACR 151

[Close]

BLAST of Carg12285 vs. Swiss-Prot
Match: sp|B9F4I8|LPA1_ORYSJ (P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 70/141 (49.65%), Postives = 82/141 (58.16%), Query Frame = 0


Query: 34  SFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRKE---ASTDVFLPEESDILGLVSLV 93
           +FRYTR VLQ TLQLMGCK RHAFKISK VF ++R E   AS       E +   LV   
Sbjct: 56  AFRYTRPVLQGTLQLMGCKARHAFKISKRVFNVMRSEFLDASKSDTADNEENAPSLV--- 115

Query: 94  GQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFELYKKSRTAVVKRETFLDVICD 153
                 KD +         +I E   S       +IPFELYK   T VV RE FL V+CD
Sbjct: 116 ------KDVEMLK-----PKILEATLS-------SIPFELYKTQTTIVVSREKFLSVVCD 175

Query: 154 SLAKYKYVGPNQRADLILACR 172
           +L+ YKYVGPNQ+AD +LACR
Sbjct: 176 ALSSYKYVGPNQKADFLLACR 175

[Close]

BLAST of Carg12285 vs. Swiss-Prot
Match: sp|Q651A1|LPA1H_ORYSJ (P-loop NTPase domain-containing protein LPA1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0572200 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 65/157 (41.40%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 15  KLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRKEASTD 74
           KLLYIVVVD+      +  +FRYTR +L STLQLMGCKPRHAF+IS  VF+ IR     D
Sbjct: 11  KLLYIVVVDD------DGATFRYTRSLLHSTLQLMGCKPRHAFEISGRVFDEIRGHMGGD 70

Query: 75  VFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIPFELYKKS 134
                       +++ G G              G + +E     E  + +   FELYK+ 
Sbjct: 71  ------------MAMGGGG--------------GVQRYELAADAEAASPRQFQFELYKRR 130

Query: 135 RTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
            T ++ R  FL ++C +LA YKYV P+QR+DL  ACR
Sbjct: 131 TTLLIPRPLFLRLVCHALALYKYVAPDQRSDLHRACR 135

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BLAST of Carg12285 vs. TrEMBL
Match: tr|A0A1S3CSE2|A0A1S3CSE2_CUCME (p-loop NTPase domain-containing protein LPA1 homolog 2-like OS=Cucumis melo OX=3656 GN=LOC103504181 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.2e-69
Identity = 138/167 (82.63%), Postives = 147/167 (88.02%), Query Frame = 0


Query: 8   TGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI 67
           TGMAEVAKLLYIVVVDE EK EKEK SFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI
Sbjct: 39  TGMAEVAKLLYIVVVDEEEKPEKEKTSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI 98

Query: 68  RKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIP 127
           RKEAST+ FLPEE ++LG +SL   G +E D + Y+NC DG E F N GSREGDNS NIP
Sbjct: 99  RKEASTENFLPEEWNVLGSISL--GGNTESDGNQYYNCLDGKETF-NQGSREGDNSNNIP 158

Query: 128 FELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACRYLK 175
           FELYK+SRTAVV RE+FLDVICDSLAKYKYVGPNQRADLILACRYLK
Sbjct: 159 FELYKRSRTAVVGRESFLDVICDSLAKYKYVGPNQRADLILACRYLK 202

[Close]

BLAST of Carg12285 vs. TrEMBL
Match: tr|A0A0A0LXV3|A0A0A0LXV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G111370 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.6e-64
Identity = 133/164 (81.10%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 8   TGMAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI 67
           TGMAEVAKLLYIVVVDE E  EK K SFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI
Sbjct: 32  TGMAEVAKLLYIVVVDEEENPEKGKRSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELI 91

Query: 68  RKEASTDVFLPEESDILGLVSLVGQGQSEKDTDYYHNCFDGNEIFENLGSREGDNSKNIP 127
           RKEAST+ FLPEE +ILG VSL G+ ++E D + Y+NCFDG E F N   REGDN+ NIP
Sbjct: 92  RKEASTENFLPEERNILGSVSL-GE-KTETDGNRYYNCFDGKETF-NQSPREGDNNNNIP 151

Query: 128 FELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           FELYK+SRTAVV RE FLDVICDSLAKYKYVGPNQRADLILACR
Sbjct: 152 FELYKRSRTAVVGRELFLDVICDSLAKYKYVGPNQRADLILACR 192

[Close]

BLAST of Carg12285 vs. TrEMBL
Match: tr|A0A1U8JEJ6|A0A1U8JEJ6_GOSHI (p-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107906263 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.8e-45
Identity = 102/163 (62.58%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           M E+AK+LYIVVVDEGEK +KE  SFRYTR VLQSTLQLMGCK RHAFKIS+ VFEL+R 
Sbjct: 1   MGELAKVLYIVVVDEGEKRDKETSSFRYTRPVLQSTLQLMGCKARHAFKISRRVFELVRS 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYH-NCFDGNEIFENLGSREGDNSKNIPF 129
           EAS    L + S+ L    L  +  SEK+  Y + N F   E    L S E D +K IPF
Sbjct: 61  EASYSSLLQQGSETLNSDGL--RWNSEKEDAYSNFNDFQRAEAGSRLTSNEDDRNKGIPF 120

Query: 130 ELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           ELYK+  + VVKRE FLDV+CD+LA+YKYVGPNQRADL+LACR
Sbjct: 121 ELYKRRTSVVVKREAFLDVVCDALAEYKYVGPNQRADLVLACR 161

[Close]

BLAST of Carg12285 vs. TrEMBL
Match: tr|A0A1U8PHT6|A0A1U8PHT6_GOSHI (p-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107958559 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.8e-45
Identity = 102/163 (62.58%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           M E+AK+LYIVVVDEGEK +KE  SFRYTR VLQSTLQLMGCK RHAFKIS+ VFEL+R 
Sbjct: 1   MGELAKVLYIVVVDEGEKRDKETSSFRYTRPVLQSTLQLMGCKARHAFKISRRVFELVRS 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYH-NCFDGNEIFENLGSREGDNSKNIPF 129
           EAS    L + S+ L    L  +  SEK+  Y + N F   E    L S E D +K IPF
Sbjct: 61  EASYSSLLQQGSETLNSDGL--RWSSEKEDAYSNFNDFQRAEAGSRLTSNEDDRNKGIPF 120

Query: 130 ELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           ELYK+  + VVKRE FLDV+CD+LA+YKYVGPNQRADL+LACR
Sbjct: 121 ELYKRRTSVVVKREAFLDVVCDALAEYKYVGPNQRADLVLACR 161

[Close]

BLAST of Carg12285 vs. TrEMBL
Match: tr|A0A0D2RYF3|A0A0D2RYF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G110000 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.5e-45
Identity = 102/163 (62.58%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 10  MAEVAKLLYIVVVDEGEKLEKEKGSFRYTRHVLQSTLQLMGCKPRHAFKISKWVFELIRK 69
           M E+AK+LYIVVVDEGEK +KE  SFRYTR VLQSTLQLMGCK RHAFKIS  VFEL+R 
Sbjct: 1   MGELAKVLYIVVVDEGEKRDKETSSFRYTRPVLQSTLQLMGCKARHAFKISSRVFELVRS 60

Query: 70  EASTDVFLPEESDILGLVSLVGQGQSEKDTDYYH-NCFDGNEIFENLGSREGDNSKNIPF 129
           EAS    L + S+ L    L  +  SEK+  Y + N F   E    L S E D +K IPF
Sbjct: 61  EASYSSLLQQGSETLNSDGL--RWNSEKEDAYSNFNDFQRAEAGSRLTSNEDDRNKGIPF 120

Query: 130 ELYKKSRTAVVKRETFLDVICDSLAKYKYVGPNQRADLILACR 172
           ELYK+  + VVKRE FLDV+CD+LA+YKYVGPNQRADL+LACR
Sbjct: 121 ELYKRRTSVVVKREAFLDVVCDALAEYKYVGPNQRADLVLACR 161

The following BLAST results are available for this feature:

BLAST of Carg12285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948849.1	1.8e-91	99.42	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbit...	[more]
XP_022998859.1	4.5e-90	97.66	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Cucurbit...	[more]
XP_023523962.1	4.6e-87	100.00	LOW QUALITY PROTEIN: P-loop NTPase domain-containing protein LPA1 homolog 1-like...	[more]
XP_022948852.1	2.3e-86	99.38	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbit...	[more]
XP_022998862.1	5.7e-85	97.53	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbit...	[more]

BLAST of Carg12285 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60760.1	1.9e-34	50.59	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G45090.1	7.5e-31	48.47	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Carg12285 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJH9\|LPAH1_ARATH	3.4e-33	50.59	P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana O...	[more]
sp\|Q93ZS1\|LPAH2_ARATH	1.4e-29	48.47	P-loop NTPase domain-containing protein LPA1 homolog 2 OS=Arabidopsis thaliana O...	[more]
sp\|B9F4I8\|LPA1_ORYSJ	1.0e-24	49.65	P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q651A1\|LPA1H_ORYSJ	1.2e-22	41.40	P-loop NTPase domain-containing protein LPA1 homolog OS=Oryza sativa subsp. japo...	[more]

BLAST of Carg12285 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSE2\|A0A1S3CSE2_CUCME	2.2e-69	82.63	p-loop NTPase domain-containing protein LPA1 homolog 2-like OS=Cucumis melo OX=3...	[more]
tr\|A0A0A0LXV3\|A0A0A0LXV3_CUCSA	1.6e-64	81.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G111370 PE=4 SV=1	[more]
tr\|A0A1U8JEJ6\|A0A1U8JEJ6_GOSHI	3.8e-45	62.58	p-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 OS=Gossyp...	[more]
tr\|A0A1U8PHT6\|A0A1U8PHT6_GOSHI	3.8e-45	62.58	p-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Gossypium hirsutu...	[more]
tr\|A0A0D2RYF3\|A0A0D2RYF3_GOSRA	6.5e-45	62.58	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G110000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12285-RA	Carg12285-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33477:SF4	SUBFAMILY NOT NAMED	coord: 10..172
None	No IPR available	PANTHER	PTHR33477	FAMILY NOT NAMED	coord: 10..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12285	Cla005099	Watermelon (97103) v1	carwmB0440
Carg12285	Csa1G111370	Cucumber (Chinese Long) v2	carcuB0472
Carg12285	ClCG03G002830	Watermelon (Charleston Gray)	carwcgB0436
Carg12285	CSPI01G13430	Wild cucumber (PI 183967)	carcpiB0477
Carg12285	CmaCh01G005100	Cucurbita maxima (Rimu)	carcmaB0613
Carg12285	CmoCh01G005420	Cucurbita moschata (Rifu)	carcmoB0596
Carg12285	Lsi03G000160	Bottle gourd (USVL1VR-Ls)	carlsiB404
Carg12285	Cp4.1LG02g12530	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12285	CsGy1G013540	Cucumber (Gy14) v2	carcgybB0449
Carg12285	CsaV3_1G013720	Cucumber (Chinese Long) v3	carcucB0474
Carg12285	Cla97C03G053900	Watermelon (97103) v2	carwmbB0467
Carg12285	Bhi08G000199	Wax gourd	carwgoB0532

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12285	Wax gourd	carwgoB0528
Carg12285	Silver-seed gourd	carcarB450
Carg12285	Cucumber (Gy14) v2	carcgybB0451
Carg12285	Cucurbita maxima (Rimu)	carcmaB0611
Carg12285	Cucurbita moschata (Rifu)	carcmoB0594
Carg12285	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12285	Wild cucumber (PI 183967)	carcpiB0479
Carg12285	Cucumber (Chinese Long) v2	carcuB0474
Carg12285	Cucumber (Chinese Long) v3	carcucB0476
Carg12285	Melon (DHL92) v3.5.1	carmeB0449
Carg12285	Melon (DHL92) v3.6.1	carmedB0452
Carg12285	Watermelon (Charleston Gray)	carwcgB0432
Carg12285	Watermelon (97103) v1	carwmB0439