Carg12273 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAGAAAGAGATTGTTAAAACAGACGGAGAGAAAAGAAAGAATCGCTTTGTATATAAGCCAACGAATCCAAAGCCTATGATTCTGGAAGAAGAGAGACGAGAGTAAAAGCGAGCGAGACAGAGACACAGGAGGACCTCCGCGACCGACGGCGACCGGCTGTTTTGGTGGTAGCGCTATCGGACGGACACAGAGCTTCGGCCATGGCAGATTCTAACGACTCTGTTTCCGTCGACATGGAGAAGATCTATCTCGGTGGAACGGTTTGTCTTAATTTTATTCGTTTCTTGCTTTTTTCCACCAGGGTTTGCCTTTAATGGCTTGGTTTATTGTGCAGTTGAATCGTTTTTTATTTCTCGGTTCTTTCTTTTTTGTCGATCGAGAGATTTTAGCGGGGTTTTTTCTTCTCTTCATGATTTGATGGCTTAAAATCCCGTTTTCTTTTTGCTGTGGGGCTGGGGATTCTTATTATGGGTGAAGTGTCTTATGGCATTCTATAGCTTTGTTCGGATGTGAATATAAAGGAGAAAATTATTTGGGGATTATTACTTTCCCACTTTTCTTTTTTTCCCGTTCCGATCTGGAGTTCATTTCCATGGCTCGTTTGACCGAGGATCTTCCATTCATTAGGAAGCTATTAACAATTAAGTCCAACCCTTCTTCCTTAAATGAATGAACTAATTAATTAAGCTAGGCAATGGGTTAGGTTTTGAGGCTACTTTCTTGATTCAGGGATCGGTGTTTTTTCCTACTTGTTTAAATGCTTGATGTGATAACGATGGGATTTGATCATTTCCTATTTCTAGCTTCTGGGGTCCTTTTTGTTTCCTTCCAATTTTTTCCTTCTCTTTTTGGTTTGCATTATGTTCTATGTCGTTGTTATCTAGGCCTTGACATTTTTAAACCCTGTTATTCCTCCTATTCAATTTTCTTTTACCTCTTTTGACGAAGGGTTTTCACCTGGTCAAGCTTTTATGAGGATTAAGACATCTTGTATCTCTTTAATTTGTGTTTTTTTTCTAGGATTTTTAGTTTTTCAGTTGGGGTTTTGGGAATTGTTTGTTTGAACTTCGCAATTATCAATGAGTTTGAAGATGGTAGTGCTTTTGTTAGATATTTTTCCATTTGCTTTCTTGTAGTATTGGTTGCTTATCTTAGTACTTAACTTATCCCTTGAGGATATGATCGTTAATCGCTGGAAGCCCATTACTGAATGAACCAACGCCTTACCCACTTTTTTGCTTCTTATTCTTCTTTTTGTAATGAAACTTTATTTGTGTTGACAGATATGATTGCTTATTTATCTTGGCTGTTGTCATAATTTTTGAGCTAATGATAATTCGAACGCAGAAATATACATTCGTATTTTCGCTCTACTTTTATAAAGTTGTACTAGATTGAAGGAACAAGTTAGCTTGGGCATCTTGAAAGGGAATGCACATGGGCTGTTCTTTTAGGATATAATAGGCTGGAAATGTTGGACTATTTGAACTTTTTTCCTTCCAAAAGGGCTTCCTTTTTGCTCTCCCATAGCTCGTACAGGAATAATATGTGATTGGGAGAGACAACTACAAGATGTTTCTTATTTATATTCTTTTTGATTTGAGTGTTTTGATTCCCCCCAATACTTTTCATATCAAATGCCACTTATGTCATTCACAGGAGCATCATATACGAACTGGCCAGGGTTCTGTGTCTGTTATAGTTTGCGGAGACCAAGACAAGCCGCCACTGATTACCTATCCTGATTTGGCTCTAAATCGTAAGTGCTTGGAGTTATCCGTTCTTCTTAGTCGCCATCTAAGATGCATTAATATGGATACTAGACACAAATACTGTGACAGGTTAGTTTGTAAGTATCTAGGGCATGAACATGGCAAAGACACGTTTACTTAAATATACATTTAACATTTTTACACCAGAAGGAAATTCAAAGTCCATATGTTTATGTATTTATATGCTTAAAAATATGAATTTGATGTGTTTTGCACTAAAAAATCATCATTATATGTCTATTTAGTATACTTAACAAATGTTCGAACTAGATTGACTATGTACAGCTAGTATGTAACTCATTTATTGTGCTAACAAGTGTTTGAGATGTGTCCAACAAGTGTAGGACTTGGACAAGTGAGCTAAACTAAAGTGTCTGTGTTTCTTACATCATCTTCAAAATATTTGATATAACTTTTAAGTGGTTTCTTTTCACTGAGTTTTGCAGATATGTCGTGTTTTCAAGGATTATTCTTCTTCCCTGAAGCAGCTTCTTTGCTACTTCACAACTTTTGCATCTACCATATCAGTCCACCAGGACATGAGGTCTGTATTATTGTTGAGTAAATTTGTGTACGAGGATAACTGTATCTGCTTCTGAATACTATATTCACATAGCTTCCTTTTCGGAACTTTACCAAGAGTTCTTGCAGTTAGGAGCTGCTGAGATTTGTCAGGATAATCCTATGCCCTCTGCTGATGATTTAGCAGATCAAATCCTTGAGGTTCTCAACTATTTTGGGTAATTACAATGCATCCTCTCTCGACTCCTCTTTAGAAGTTTGATATCAAAGCTTGTATAGTTGATTTTGATTTGGCTATTTCTATTACAGACTTGGTGCAGTGATGTGCATGGGGGTAACAGCAGGCGCTTACATTCTTACGCTTTTTGCTGTACGTTCATCTCATTGTGAAATTTATTGTGAAGCTCAATCAAAAGTTTTTTTTGGTCTGACCAATTTATTATTTTACAGTTGAAATATAGAGAACGTGTTCTTGGTTTAATTCTTATATCCCCCTTATGCAAGGCACCGTCTTGGTCCGAGTGGTTCTATAATAAGGTAACCTTTTCAAGCCTTGTTATTCTTCATAGATAGAATTACATTCAAGCTTTGATTCATGTTAAATATCTTGTATCCGTTGTACTTGCAGGTAATGTCTAACTTGTTATACTTCTATGGCATGTGCGGGTTGTTGAAAGAGTGCTTGCTTCAGCGGTACTTCAGCAAGGTTATATGATTTCCATTCTTAGAGTTAATTCACTTTTCTGTGTTCACCTTTGATATTGTTGTGGGTGACTGGATTCATGAGATTGTGTTGTAACTTGCAACAGGAGGTCCGTGGTAGTGCCGAAGTTGCAGAGTCCGATATAGTTCAAGCTTGTAGAAAAGTATGTGCTAGTTTGTCTGTCGTGTATCCTTTTCCGTTTCTCGAACTTTTCTCGTTGTTGGTTCAAATTTTGGGTTGGTTTGATAAAGATGGTATATCTGTTCTGTCAGTTGTTAGATGAGAGACAGAGCAACAATGTTTTGAGGTTCCTCCAAGCAATTAATGGGTAAATTCTTTTCCCATCTCTACCATTCGTTCCGCTCATCCACGTATATGTCAATCTGCAACGCAACCTTTTTTTCCCTTTTGCAGAAGACCAGACATTACTGAAGGGTTGAAAAGGCTCCGGTGTCGCACTCTCATTTTCGTCGGGGATAGCTCGCCTTTCCATTCTGAAGCACTCCACATGATATCAAAATTGGACAGAAGATATAGCGCCTTGGTTGAGGTATGACATGATAGTAATTGAACGCTCTGCAGCCACAATTGCCTAGGCTTCGTTAAATAATTAACCCGAGGGGGGGGGGGGTGATTCACGCAGGTCCAAGCTTGTGGATCGATGGTAACTGAAGAGCAGCCACACGCAATGTTGATACCAATGGAGTACTTCTTCATGGGATACGGGTTGTATAGACCATGCCAATTCAGCGACAGTCCACGGAGTCCGCTCAGTCCATCTTGCATCTCCCCAGAGCTCCTTTCTCCAGAAAGCATGGGATTAAAGCTAAAACCAATAAAGACCCGCATTTCTTAATCATCGAGGAGGGACAGAGAACTGGAAAAGAAGGAGAAGAAGGGGCTGAGCTAAGGCGAATGCTTTGCTGTGATTCGAAAGTCTGTCCGTCCGTCCGTCTGTACGTCTGTAAGTTTTTTCGTTTCCAGAATTTTGATTTGTTGAAAGGGCGTTTGTAGATAGGGAGAGATGTGAGTGAAAAAAGAGCTTACAATGATGCTGGGTAAATAACTATAGGGAGGACACATTCATTCTTTTGTAGTCATCAGACATAAAAGAGATCATATTCTTGAACTCTTTGGATTCGTATATTCTTCAATCTGACCAAAATATTTATTTATTATGACTTTCAATGAATTGAGCTGCTGCATGCTGCTACTCTTCTTCTTATGAGTAATATCATCGTTTTCTTTCATTCAACACGAATTTGTGTGTTATCTACTTAGCTATGTTCAGATGGGTTCATCTTTAGTTATATTGGTGTGTGTATGTCTGTTTTATATTCTAATATATTGATTGAATGAGATGGAGCCTGAAAATGATTGAAATGGCTAGCTGGGATTCACTGAACGAGGAGTTTTTTGCTTAATTTTTGCCGGCCTTCAACGTGATTTCCGCTTTCTCTTTTAAAAATAGTTGTGAAAGCATTCATGTTCTGTGCTTGTTGGCTATTATTATTACTATTATTATTCCCTTTATTTATGCGGCTGTCCATAAAGTCATGAGCATCATACAGGTTCTTAATGGTCACTATTGATTGCTCCCAACACCATTTTGCTTTGGTTTATTGATAAATTTGTGTAATTTGTTAAATCATACGTACTTGAAAATATAAAATG ATGAGAGAAAGAGATTCCAACGAATCCAAAGCCTATGATTCTGGAAGAAGAGAGACGAGAGTAAAAGCGAGCGAGACAGAGACACAGGAGGACCTCCGCGACCGACGGCGACCGGCTGTTTTGGTGGTAGCGCTATCGGACGGACACAGAGCTTCGGCCATGGCAGATTCTAACGACTCTGTTTCCGTCGACATGGAGAAGATCTATCTCGGTGGAACGGAGCATCATATACGAACTGGCCAGGGTTCTGTGTCTGTTATATTAGGAGCTGCTGAGATTTGTCAGGATAATCCTATGCCCTCTGCTGATGATTTAGCAGATCAAATCCTTGAGGTTCTCAACTATTTTGGACTTGGTGCAGTGATGTGCATGGGGGTAACAGCAGGCGCTTACATTCTTACGCTTTTTGCTGTACGTTCATCTCATTGTGAAATTTATTGTGAAGCTCAATCAAAATTGAAATATAGAGAACGTGTTCTTGGTTTAATTCTTATATCCCCCTTATGCAAGGCACCGTCTTGGTCCGAGTGGTTCTATAATAAGGTAATGTCTAACTTGTTATACTTCTATGGCATGTGCGGGTTGTTGAAAGAGTGCTTGCTTCAGCGGTACTTCAGCAAGGAGGTCCGTGGTAGTGCCGAAGTTGCAGAGTCCGATATAGTTCAAGCTTGTAGAAAATTGTTAGATGAGAGACAGAGCAACAATGTTTTGAGGTTCCTCCAAGCAATTAATGGAAGACCAGACATTACTGAAGGGTTGAAAAGGCTCCGGTGTCGCACTCTCATTTTCGTCGGGGATAGCTCGCCTTTCCATTCTGAAGCACTCCACATGATATCAAAATTGGACAGAAGATATAGCGCCTTGGTTGAGGTCCAAGCTTGTGGATCGATGGTAACTGAAGAGCAGCCACACGCAATGTTGATACCAATGGAGTACTTCTTCATGGGATACGGGTTGTATAGACCATGCCAATTCAGCGACAGTCCACGGAGTCCGCTCAGTCCATCTTGCATCTCCCCAGAGCTCCTTTCTCCAGAAAGCATGGGATTAAAGCTAAAACCAATAAAGACCCGCATTTCTTAATCATCGAGGAGGGACAGAGAACTGGAAAAGAAGGAGAAGAAGGGGCTGAGCTAAGGCGAATGCTTTGCTGTGATTCGAAAGTCTGTCCGTCCGTCCGTCTGTACGTCTGTAAGTTTTTTCGTTTCCAGAATTTTGATTTGTTGAAAGGGCGTTTGTAGATAGGGAGAGATGTGAGTGAAAAAAGAGCTTACAATGATGCTGGGTAAATAACTATAGGGAGGACACATTCATTCTTTTGTAGTCATCAGACATAAAAGAGATCATATTCTTGAACTCTTTGGATTCGTATATTCTTCAATCTGACCAAAATATTTATTTATTATGACTTTCAATGAATTGAGCTGCTGCATGCTGCTACTCTTCTTCTTATGAGTAATATCATCGTTTTCTTTCATTCAACACGAATTTGTGTGTTATCTACTTAGCTATGTTCAGATGGGTTCATCTTTAGTTATATTGGTGTGTGTATGTCTGTTTTATATTCTAATATATTGATTGAATGAGATGGAGCCTGAAAATGATTGAAATGGCTAGCTGGGATTCACTGAACGAGGAGTTTTTTGCTTAATTTTTGCCGGCCTTCAACGTGATTTCCGCTTTCTCTTTTAAAAATAGTTGTGAAAGCATTCATGTTCTGTGCTTGTTGGCTATTATTATTACTATTATTATTCCCTTTATTTATGCGGCTGTCCATAAAGTCATGAGCATCATACAGGTTCTTAATGGTCACTATTGATTGCTCCCAACACCATTTTGCTTTGGTTTATTGATAAATTTGTGTAATTTGTTAAATCATACGTACTTGAAAATATAAAATG ATGAGAGAAAGAGATTCCAACGAATCCAAAGCCTATGATTCTGGAAGAAGAGAGACGAGAGTAAAAGCGAGCGAGACAGAGACACAGGAGGACCTCCGCGACCGACGGCGACCGGCTGTTTTGGTGGTAGCGCTATCGGACGGACACAGAGCTTCGGCCATGGCAGATTCTAACGACTCTGTTTCCGTCGACATGGAGAAGATCTATCTCGGTGGAACGGAGCATCATATACGAACTGGCCAGGGTTCTGTGTCTGTTATATTAGGAGCTGCTGAGATTTGTCAGGATAATCCTATGCCCTCTGCTGATGATTTAGCAGATCAAATCCTTGAGGTTCTCAACTATTTTGGACTTGGTGCAGTGATGTGCATGGGGGTAACAGCAGGCGCTTACATTCTTACGCTTTTTGCTGTACGTTCATCTCATTGTGAAATTTATTGTGAAGCTCAATCAAAATTGAAATATAGAGAACGTGTTCTTGGTTTAATTCTTATATCCCCCTTATGCAAGGCACCGTCTTGGTCCGAGTGGTTCTATAATAAGGTAATGTCTAACTTGTTATACTTCTATGGCATGTGCGGGTTGTTGAAAGAGTGCTTGCTTCAGCGGTACTTCAGCAAGGAGGTCCGTGGTAGTGCCGAAGTTGCAGAGTCCGATATAGTTCAAGCTTGTAGAAAATTGTTAGATGAGAGACAGAGCAACAATGTTTTGAGGTTCCTCCAAGCAATTAATGGAAGACCAGACATTACTGAAGGGTTGAAAAGGCTCCGGTGTCGCACTCTCATTTTCGTCGGGGATAGCTCGCCTTTCCATTCTGAAGCACTCCACATGATATCAAAATTGGACAGAAGATATAGCGCCTTGGTTGAGGTCCAAGCTTGTGGATCGATGGTAACTGAAGAGCAGCCACACGCAATGTTGATACCAATGGAGTACTTCTTCATGGGATACGGGTTGTATAGACCATGCCAATTCAGCGACAGTCCACGGAGTCCGCTCAGTCCATCTTGCATCTCCCCAGAGCTCCTTTCTCCAGAAAGCATGGGATTAAAGCTAAAACCAATAAAGACCCGCATTTCTTAA MRERDSNESKAYDSGRRETRVKASETETQEDLRDRRRPAVLVVALSDGHRASAMADSNDSVSVDMEKIYLGGTEHHIRTGQGSVSVILGAAEICQDNPMPSADDLADQILEVLNYFGLGAVMCMGVTAGAYILTLFAVRSSHCEIYCEAQSKLKYRERVLGLILISPLCKAPSWSEWFYNKVMSNLLYFYGMCGLLKECLLQRYFSKEVRGSAEVAESDIVQACRKLLDERQSNNVLRFLQAINGRPDITEGLKRLRCRTLIFVGDSSPFHSEALHMISKLDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFFMGYGLYRPCQFSDSPRSPLSPSCISPELLSPESMGLKLKPIKTRIS
BLAST of Carg12273 vs. NCBI nr
Match: XP_022934000.1 (protein NDL1-like [Cucurbita moschata] >XP_023531009.1 protein NDL1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 535.0 bits (1377), Expect = 1.9e-148 Identity = 292/359 (81.34%), Postives = 292/359 (81.34%), Query Frame = 0
BLAST of Carg12273 vs. NCBI nr
Match: XP_023004170.1 (protein NDL1-like [Cucurbita maxima]) HSP 1 Score: 528.9 bits (1361), Expect = 1.4e-146 Identity = 289/359 (80.50%), Postives = 290/359 (80.78%), Query Frame = 0
BLAST of Carg12273 vs. NCBI nr
Match: XP_022147733.1 (pollen-specific protein SF21-like isoform X3 [Momordica charantia]) HSP 1 Score: 525.4 bits (1352), Expect = 1.5e-145 Identity = 286/359 (79.67%), Postives = 289/359 (80.50%), Query Frame = 0
BLAST of Carg12273 vs. NCBI nr
Match: XP_022147732.1 (pollen-specific protein SF21-like isoform X2 [Momordica charantia]) HSP 1 Score: 524.2 bits (1349), Expect = 3.4e-145 Identity = 286/362 (79.01%), Postives = 289/362 (79.83%), Query Frame = 0
BLAST of Carg12273 vs. NCBI nr
Match: XP_004135699.1 (PREDICTED: pollen-specific protein SF21 isoform X1 [Cucumis sativus]) HSP 1 Score: 521.2 bits (1341), Expect = 2.9e-144 Identity = 284/359 (79.11%), Postives = 289/359 (80.50%), Query Frame = 0
BLAST of Carg12273 vs. TAIR10
Match: AT2G19620.1 (N-MYC downregulated-like 3) HSP 1 Score: 396.4 bits (1017), Expect = 1.9e-110 Identity = 214/358 (59.78%), Postives = 255/358 (71.23%), Query Frame = 0
BLAST of Carg12273 vs. TAIR10
Match: AT5G56750.1 (N-MYC downregulated-like 1) HSP 1 Score: 389.0 bits (998), Expect = 3.1e-108 Identity = 218/359 (60.72%), Postives = 247/359 (68.80%), Query Frame = 0
BLAST of Carg12273 vs. TAIR10
Match: AT5G11790.1 (N-MYC downregulated-like 2) HSP 1 Score: 388.3 bits (996), Expect = 5.3e-108 Identity = 209/359 (58.22%), Postives = 243/359 (67.69%), Query Frame = 0
BLAST of Carg12273 vs. Swiss-Prot
Match: sp|Q9ZUN1|NDL3_ARATH (Protein NDL3 OS=Arabidopsis thaliana OX=3702 GN=NDL3 PE=1 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 3.5e-109 Identity = 214/358 (59.78%), Postives = 255/358 (71.23%), Query Frame = 0
BLAST of Carg12273 vs. Swiss-Prot
Match: sp|Q9FJT7|NDL1_ARATH (Protein NDL1 OS=Arabidopsis thaliana OX=3702 GN=NDL1 PE=1 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 5.6e-107 Identity = 218/359 (60.72%), Postives = 247/359 (68.80%), Query Frame = 0
BLAST of Carg12273 vs. Swiss-Prot
Match: sp|Q9ASU8|NDL2_ARATH (Protein NDL2 OS=Arabidopsis thaliana OX=3702 GN=NDL2 PE=1 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 9.5e-107 Identity = 209/359 (58.22%), Postives = 243/359 (67.69%), Query Frame = 0
BLAST of Carg12273 vs. Swiss-Prot
Match: sp|O23969|SF21_HELAN (Pollen-specific protein SF21 OS=Helianthus annuus OX=4232 GN=SF21 PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.0e-97 Identity = 195/359 (54.32%), Postives = 225/359 (62.67%), Query Frame = 0
BLAST of Carg12273 vs. Swiss-Prot
Match: sp|Q641F2|NDR1A_XENLA (Protein NDRG1-A OS=Xenopus laevis OX=8355 GN=ndrg1-a PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.8e-18 Identity = 74/242 (30.58%), Postives = 106/242 (43.80%), Query Frame = 0
BLAST of Carg12273 vs. TrEMBL
Match: tr|A0A1S3BQ33|A0A1S3BQ33_CUCME (pollen-specific protein SF21 OS=Cucumis melo OX=3656 GN=LOC103492303 PE=4 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 1.4e-142 Identity = 280/359 (77.99%), Postives = 288/359 (80.22%), Query Frame = 0
BLAST of Carg12273 vs. TrEMBL
Match: tr|A0A0A0LZC6|A0A0A0LZC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G586790 PE=4 SV=1) HSP 1 Score: 501.1 bits (1289), Expect = 2.0e-138 Identity = 274/333 (82.28%), Postives = 283/333 (84.98%), Query Frame = 0
BLAST of Carg12273 vs. TrEMBL
Match: tr|M5W2N3|M5W2N3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G213100 PE=4 SV=1) HSP 1 Score: 483.8 bits (1244), Expect = 3.4e-133 Identity = 263/359 (73.26%), Postives = 279/359 (77.72%), Query Frame = 0
BLAST of Carg12273 vs. TrEMBL
Match: tr|A0A2N9G507|A0A2N9G507_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22437 PE=4 SV=1) HSP 1 Score: 481.1 bits (1237), Expect = 2.2e-132 Identity = 263/359 (73.26%), Postives = 277/359 (77.16%), Query Frame = 0
BLAST of Carg12273 vs. TrEMBL
Match: tr|A0A2K1WWY8|A0A2K1WWY8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G067700v3 PE=4 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 3.7e-132 Identity = 258/344 (75.00%), Postives = 274/344 (79.65%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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