Carg12254 (gene) Silver-seed gourd

Overview
NameCarg12254
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_054 : 705758 .. 707183 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGTAAAACCACGACATGCTTAATAATATGCACTATATTCTCATTCTTTATCTTATGGATGGCGTTGATAAGTGGTCTTAGTGAGGAGATGAACTCGTGTTTATGGATGATTCCTTTTGCCTATAAGGTGTTTGATAAAATGTCTGAATCATTTTTTCAACGTAGTGGTTGCTCTGCCGATGCTACTCTTGCTTTTATTCATATTCTTTTTCTTTGTTTACTTGTGCATCGTCGACTCATTTGAATATTCCAGCATGTTTGAACATATCTATATGGAAAGAAGCTGACTGCAGTTTTGTTTCTTCAGAAGGAAGAAAAATGCGCCTTCCTTTGACAAGATGGTCAAGTTTCCAGGGCTACCCAAAAGGTAGAATTTTTTCCCCTCTTTCAACATGCAAGATTGTTCGAGGATTGTTGGGAGGGAGTCCCACGTTGGCTAATTTAGGAAATGATCACGGGTTTATAAGTAAGTAATACATCTCCATTAGTATGAGACCTTTTTTGGGAAGCCCGAAGCAAAGCCACGAGAGCTTGTGCTCAAAGTGGAGAATATCATACCATTGTGGAGATCTATGATTCTTAATAAAGCTCGCTTGAAATTATAGAGCTCTGTAACTCGTTGACTTTTTGTGGTGGGGTTGGGTTTCAACTTCCATTTAATCACTCCTCTCTTAAAGAATCGAAATGAATTAATTTTTCTTCTTTAATGTGACTTTCCCATTATCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGGTCATCATTAATTCAGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAAGTAAAGTTTCCCTTTCTTCTTTATACCACAGTTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGTGAGATAATAACTGATGTTTTTAGTTCACACTTTCAATCACTGCAAAAGCTGTGGCATCAGATTCTCGAATTTGAACTTCCATAGCCATTATTAGATATTTTAGAGTTGTAACTTTCAGGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAGCATTCCTCATCAATGACAACGAGGAGGTACCTGTTTTCCACTTTACAACTGCTTTTCTCTCTGTTTAATAGAAT

mRNA sequence

ATGCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAATTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAGCATTCCTCATCAATGACAACGAGGAGGTACCTGTTTTCCACTTTACAACTGCTTTTCTCTCTGTTTAATAGAAT

Coding sequence (CDS)

ATGCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAATTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAG

Protein sequence

MPDILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGRAYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGSTRIMLKQDMSCSLTEFLLCPACFLLAPRIILAL
Homology
[Close]
BLAST of Carg12254 vs. NCBI nr
Match: XP_022145002.1 (nudix hydrolase 8-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 4  ILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEG 60
          ++ KDGLPETSSTRKLI +NGNIGPKR+ALDVLSPDI TP + VELLDH NDE+EG
Sbjct: 38 VVYKDGLPETSSTRKLIPVNGNIGPKRSALDVLSPDISTPNMAVELLDHLNDEYEG 93

The following BLAST results are available for this feature:
BLAST of Carg12254 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145002.11.4e-1578.57nudix hydrolase 8-like [Momordica charantia][more]
BLAST of Carg12254 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg12254 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg12254 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12254-RACarg12254-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12254Cla011247Watermelon (97103) v1carwmB0036
Carg12254ClCG03G015990Watermelon (Charleston Gray)carwcgB0038
Carg12254CmaCh11G006630Cucurbita maxima (Rimu)carcmaB0047
Carg12254CmaCh10G006820Cucurbita maxima (Rimu)carcmaB0044
Carg12254CmoCh11G006740Cucurbita moschata (Rifu)carcmoB0050
Carg12254Lsi06G002340Bottle gourd (USVL1VR-Ls)carlsiB034
Carg12254Cp4.1LG04g10390Cucurbita pepo (Zucchini)carcpeB0054
Carg12254Cla97C03G066290Watermelon (97103) v2carwmbB0032
Carg12254Bhi02G001612Wax gourdcarwgoB0044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12254Wax gourdcarwgoB0039
Carg12254Wax gourdcarwgoB0041
Carg12254Silver-seed gourdcarcarB046
Carg12254Silver-seed gourdcarcarB038
Carg12254Silver-seed gourdcarcarB042
Carg12254Silver-seed gourdcarcarB044
Carg12254Cucumber (Gy14) v2carcgybB0033
Carg12254Cucumber (Gy14) v2carcgybB0041
Carg12254Cucumber (Gy14) v1carcgyB0040
Carg12254Cucumber (Gy14) v1carcgyB0043
Carg12254Cucurbita maxima (Rimu)carcmaB0048
Carg12254Cucurbita maxima (Rimu)carcmaB0049
Carg12254Cucurbita moschata (Rifu)carcmoB0047
Carg12254Cucurbita moschata (Rifu)carcmoB0051
Carg12254Cucurbita moschata (Rifu)carcmoB0052
Carg12254Cucurbita pepo (Zucchini)carcpeB0049
Carg12254Cucurbita pepo (Zucchini)carcpeB0053
Carg12254Cucurbita pepo (Zucchini)carcpeB0055
Carg12254Wild cucumber (PI 183967)carcpiB0035
Carg12254Wild cucumber (PI 183967)carcpiB0044
Carg12254Cucumber (Chinese Long) v2carcuB0033
Carg12254Cucumber (Chinese Long) v2carcuB0042
Carg12254Cucumber (Chinese Long) v3carcucB0035
Carg12254Cucumber (Chinese Long) v3carcucB0045
Carg12254Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12254Melon (DHL92) v3.5.1carmeB0036
Carg12254Melon (DHL92) v3.5.1carmeB0039
Carg12254Melon (DHL92) v3.6.1carmedB0037
Carg12254Melon (DHL92) v3.6.1carmedB0040
Carg12254Watermelon (Charleston Gray)carwcgB0037
Carg12254Watermelon (97103) v1carwmB0038
Carg12254Watermelon (97103) v2carwmbB0031
Carg12254Watermelon (97103) v2carwmbB0039