Carg12223 (gene) Silver-seed gourd

NameCarg12223
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_054 : 542371 .. 543314 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGCTGCTCAAATGTTCTCAACCTTGTCCAGAGCCTGGGATAAATCATGTTCTGAATCCATATTCCATCTGAATAGAGCCAAATTTGCAGAAATGGAGCTCAAGAAGTTGACAAATGCCGAATCTCTTGGGTTCGAAATTTCATTTCAGATTAGAATAGCTGTTTTGCTCGGCAGAGTAGTTGGAAGTTTCACACGTGTCAGCAACCCGCTTGTCTGTCTTTGTGCAGCTTATCCTGTCAGCTTTTCTCTTTTGTAGCCAATCAGATTGTTGACCACCATCCACGTGGTAGAAAATTTCTTGTGTTCACACTGCCAACTAGCTCCACGTTCCATTTTTTGACATTGTTTAAGAACTTTTATTTGGTAAATATTTCTTTTAATTTTAGTATAATGATGCCATTATTCAATTCTTTTTCCATGACATGTAAATTAAAATTGATATGTTTTATATATCCTTGCACTATCTTTTATTTGAGGTTGAAATTTGATTAAGTAATTATGATAAATACAAATGAATTCGGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGAGATCCCATATCCTTAGAAAGCTACAAAAGGCAATCATTCGGAGGGAAGGCAGCCAGAGCTGCTGTGACAAGATTCAAACATGGGGCTGTTTGTGCAGACAGAGGACGATCATCATAACTCTTCAAGGCTCAACATTGGAAGCAGCAGCTTCAAATAAGGAAAAAGAAGTCTTGATCAAACATGAAGCCAGGGAATGCAACAGCGAGGAGCAGGTGCACTTTCACAACCATAAACACACGACATTCTTGTACCTGACTTTGTTTTCATGAACACAGAGATGCTTGGGGCCATGTCAAGCAACAGATTATCCTCTTTCGCTGTCTGCAACTGAGGGCACAATGATTACACAGATCAAGGAAGAGATGGAAATGAAGAGATCA

mRNA sequence

ATGATAGCTGCTCAAATGTTCTCAACCTTGTCCAGAGCCTGGGATAAATCATGTTCTGAATCCATATTCCATCTGAATAGAGCCAAATTTGCAGAAATGGAGCTCAAGAAGTTGACAAATGCCGAATCTCTTGGGTTCGAAATTTCATTTCAGATTAGAATAGCTGTTTTGCTCGGCAGAGTAGTTGGAAGTTTCACACGTGTCAGCAACCCGCTTTATAATGATGCCATTATTCAATTCTTTTTCCATGACATAAAGCTACAAAAGGCAATCATTCGGAGGGAAGGCAGCCAGAGCTGCTGTGACAAGATTCAAACATGGGGCTGTTTGTGCAGACAGAGGACGATCATCATAACTCTTCAAGGCTCAACATTGGAAGCAGCAGCTTCAAATAAGGAAAAAGAAGTCTTGATCAAACATGAAGCCAGGGAATGCAACAGCGAGGAGCAGAGATGCTTGGGGCCATGTCAAGCAACAGATTATCCTCTTTCGCTGTCTGCAACTGAGGGCACAATGATTACACAGATCAAGGAAGAGATGGAAATGAAGAGATCA

Coding sequence (CDS)

ATGATAGCTGCTCAAATGTTCTCAACCTTGTCCAGAGCCTGGGATAAATCATGTTCTGAATCCATATTCCATCTGAATAGAGCCAAATTTGCAGAAATGGAGCTCAAGAAGTTGACAAATGCCGAATCTCTTGGGTTCGAAATTTCATTTCAGATTAGAATAGCTGTTTTGCTCGGCAGAGTAGTTGGAAGTTTCACACGTGTCAGCAACCCGCTTTATAATGATGCCATTATTCAATTCTTTTTCCATGACATAAAGCTACAAAAGGCAATCATTCGGAGGGAAGGCAGCCAGAGCTGCTGTGACAAGATTCAAACATGGGGCTGTTTGTGCAGACAGAGGACGATCATCATAACTCTTCAAGGCTCAACATTGGAAGCAGCAGCTTCAAATAAGGAAAAAGAAGTCTTGATCAAACATGAAGCCAGGGAATGCAACAGCGAGGAGCAGAGATGCTTGGGGCCATGTCAAGCAACAGATTATCCTCTTTCGCTGTCTGCAACTGAGGGCACAATGATTACACAGATCAAGGAAGAGATGGAAATGAAGAGATCA

Protein sequence

MIAAQMFSTLSRAWDKSCSESIFHLNRAKFAEMELKKLTNAESLGFEISFQIRIAVLLGRVVGSFTRVSNPLYNDAIIQFFFHDIKLQKAIIRREGSQSCCDKIQTWGCLCRQRTIIITLQGSTLEAAASNKEKEVLIKHEARECNSEEQRCLGPCQATDYPLSLSATEGTMITQIKEEMEMKRS
BLAST of Carg12223 vs. NCBI nr
Match: XP_022931798.1 (ninja-family protein mc410-like [Cucurbita moschata] >XP_022931802.1 ninja-family protein mc410-like [Cucurbita moschata] >XP_022931803.1 ninja-family protein mc410-like [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-12
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 32  EMELKKLTNAESLGFEISFQIRIAVLLGRVVGSFTRVSNPL 73
           EMELKKLTNAESLGFEISFQIRIAVLLGRVVGSFTRVSNPL
Sbjct: 457 EMELKKLTNAESLGFEISFQIRIAVLLGRVVGSFTRVSNPL 497

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022931798.18.7e-12100.00ninja-family protein mc410-like [Cucurbita moschata] >XP_022931802.1 ninja-famil... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12223-RACarg12223-RAmRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12223CmoCh11G006420Cucurbita moschata (Rifu)carcmoB0050
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12223Silver-seed gourdcarcarB046
Carg12223Silver-seed gourdcarcarB041
Carg12223Silver-seed gourdcarcarB042
Carg12223Silver-seed gourdcarcarB044
Carg12223Silver-seed gourdcarcarB045
Carg12223Silver-seed gourdcarcarB047
Carg12223Cucumber (Gy14) v2carcgybB0035
Carg12223Cucumber (Gy14) v2carcgybB0041
Carg12223Cucumber (Gy14) v2carcgybB0042
Carg12223Cucumber (Gy14) v1carcgyB0040
Carg12223Cucurbita maxima (Rimu)carcmaB0044
Carg12223Cucurbita maxima (Rimu)carcmaB0047
Carg12223Cucurbita maxima (Rimu)carcmaB0048
Carg12223Cucurbita maxima (Rimu)carcmaB0049
Carg12223Cucurbita moschata (Rifu)carcmoB0047
Carg12223Cucurbita moschata (Rifu)carcmoB0051
Carg12223Cucurbita moschata (Rifu)carcmoB0052
Carg12223Cucurbita pepo (Zucchini)carcpeB0049
Carg12223Cucurbita pepo (Zucchini)carcpeB0053
Carg12223Cucurbita pepo (Zucchini)carcpeB0054
Carg12223Cucurbita pepo (Zucchini)carcpeB0055
Carg12223Wild cucumber (PI 183967)carcpiB0044
Carg12223Cucumber (Chinese Long) v2carcuB0042
Carg12223Cucumber (Chinese Long) v3carcucB0037
Carg12223Cucumber (Chinese Long) v3carcucB0043
Carg12223Cucumber (Chinese Long) v3carcucB0045
Carg12223Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12223Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12223Melon (DHL92) v3.5.1carmeB0035
Carg12223Melon (DHL92) v3.5.1carmeB0037
Carg12223Melon (DHL92) v3.5.1carmeB0039
Carg12223Melon (DHL92) v3.6.1carmedB0036
Carg12223Melon (DHL92) v3.6.1carmedB0038
Carg12223Melon (DHL92) v3.6.1carmedB0040
Carg12223Watermelon (Charleston Gray)carwcgB0037
Carg12223Watermelon (Charleston Gray)carwcgB0040
Carg12223Watermelon (97103) v1carwmB0038
Carg12223Watermelon (97103) v1carwmB0039
Carg12223Watermelon (97103) v2carwmbB0031
Carg12223Watermelon (97103) v2carwmbB0034
Carg12223Watermelon (97103) v2carwmbB0039
Carg12223Wax gourdcarwgoB0038
Carg12223Wax gourdcarwgoB0041
Carg12223Wax gourdcarwgoB0043