Carg12209 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGCGAAATCAGCGGTGGTGGAAGCACCAGGTGTCAGCACAACAAATGCGGTGATCCGAATTGGGGTACGTTAATTTATGGTACGGTTCACGTGTCGACATCTAACGCTGTCGTTTTTTATCATTTTCTGGTGCCGTCATAAGATCTCGGAGATGTGTTGTAGGGAGAGGCTGACACGTGTATCCAAGATCACAGGTCATAACCTTCCAATTTTGGGATTTATAGACCTATTACGGGCTAAATTAATAGAATTATATACAATTAAAATCATATAAATTTAAAATTGTTATCTTATAATAAGTTAAAAGGGACAAAATACATTTTTGGCCTTAAAAAGGTTTGAGTTTAAAATGTCCATTAGACTTGTAAAGTTCCAAATAAGGCGCTTTACTTCACGAGGTTTAAATAATAGATATAATTACTGTGATTGAATCAACTACCCTTTTAGTAATTGTGACAAGTTTTACGGAATTTCACGTGCTGAATTCCTCGTAACTAGAATTTAGGGTTTACAAATGTACTCCCCGCCTTTTTCAACGATTTATCGGCGTTCAGACTTCAGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGCCCGCGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGGTTCGTTACTTCTGCACACCTTCGTTTTCGAACACTTTTCGAGCTATAATTGGATGAATAGGCGCATTGCTATTTTTTTTATTTTTTTATTTTTTTTTTGTGTGTTCTGTAAGTTTATCTCTGCGTTGAATTTCATCGCTTGCGACCTTAGGTTGAATTTATATGTATATTTTGGTAGGAAACATATTTTCAATGAAAGAATGAGAATTACGAATATAGGGAGGAAAGCCAGCCCGAGTCAATGGAGATTACAGAAAGTTCATCCAGGAGGTCGAAATACGACTTAAACCATAATTGTTAAAAGAAGAGCAATTTTTACGTCAAGATAATGTAATCAGTTTCTGAAACTGATTCAACAAAACTGTCCACAAGCCTCACCTTCGCGATTAAAGGTCCTTGTGTTCTTTTCTGGCCGAAGTTCATCAACAGACAATCCTTGATTTATAGCCATAGAATCTCTCTTGCTTTTTTGAAAGGATTGCCTCTGCATTTCGTTACCATAGATTGAATTTATTTGATTTACCAATATGATTTCTTACAAGATGATATTAAGATACATATATGGGTATATATTTTGTAACTTCATGCCACGACATGTTTACAATTTCCCATCCTTCAGGTTCTTTGTCGTAGCTAAATTCCAATTTGTGAGTTTTGCTTAAATTAGAGAGTATTAAACTAGTTAGCCAAAGTATGCTTTCGTTTCATGATTGATGAAATGCTTAGACATGCTTCTAAAACAAATGAAGAAAACCATCCTCACTCACTCTCTTTCCCAGGATATATTATTGAAGATATCTTAATAATAGAACTCCGCAGGTTCCTTGTACTTTATACGCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCGTTGCAGTATGACTCTCGTCTTTATTATACTCCCTGGTCCTTCTTGCTGCCTTATATCACTTGAAAGTTTCTGCAGGAAACTTGTGGGGCACCCTTGATCTGTATTCATTGATAGACTAATATCTATCTACCATTCACAAGAGAGGATGAGTTTTTAGAGTCTTTCCGTCTAGAGGAATTTTGTCTAAGAGTTTTGCTCAAAATGGTCAATTATTGGAATTAATGGGTTTCACTCTTGATTCCAACCAATTTCTGATCACATTTGGTGAGTCAATTATCATGTATTATGCCTACCTTGCTGTGAAAGACACTGTCAAATGTCAATTCATTGGGATGCCAAATATTTCACTTTTTTTTTTATTTTTTTTATTTTTTATTTTTTTTGCGGGATGCTAGATAGTAGATATGTCACTTATTTTTTTACTTCATTTTTTTTTTCAATCCTGTTGGAGAGGACTTGTTGGCTCTTTTGATATTTGAATGAAATTCAAGTATTTTTCTTTAATTCTAGCAATCCGCTTTGTAATCTTATACTACCTACTTTGTGTAAACTTAGTTCAATTTATTTAAAAGTATCAATTTGTGCATGTAATTTGACATTTTCTTTTTGATCTATCAAGTTCTAAGTCAGGATGTATTGATAGCTTAGGGTAAGCACAGCCATTCTTGGTTGTCATTTTGATCTTATAGAAAATGTTGTGATATTCTTGAGGAAATGGAGTTCATAACCTCTTTATTTCTTTTCTTTTATCCCCATTTTCTTCTGTATGTCGAGAATGTGGATCTACTTCCCCTTGTCAAAATTTTGTTCTGGGAATAAAACTTTCTATTCTCTTACAGCTTTGTGTTGCCGACTGCAAGAACTTAGATCTTGAGAAGGGCATTGAGTAA ATGGGAGGCGAAATCAGCGGTGGTGGAAGCACCAGGTGTCAGCACAACAAATGCGGTGATCCGAATTGGGGTACGTTAATTTATGGGTTTACAAATGTACTCCCCGCCTTTTTCAACGATTTATCGGCGTTCAGACTTCAGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGCCCGCGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGAACTCCGCAGGTTCCTTGTACTTTATACGCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCGTTGCACTTTGTGTTGCCGACTGCAAGAACTTAGATCTTGAGAAGGGCATTGAGTAA ATGGGAGGCGAAATCAGCGGTGGTGGAAGCACCAGGTGTCAGCACAACAAATGCGGTGATCCGAATTGGGGTACGTTAATTTATGGGTTTACAAATGTACTCCCCGCCTTTTTCAACGATTTATCGGCGTTCAGACTTCAGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGCCCGCGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGAACTCCGCAGGTTCCTTGTACTTTATACGCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCGTTGCACTTTGTGTTGCCGACTGCAAGAACTTAGATCTTGAGAAGGGCATTGAGTAA MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKGIE
BLAST of Carg12209 vs. NCBI nr
Match: XP_023004066.1 (uncharacterized protein LOC111497489 isoform X1 [Cucurbita maxima]) HSP 1 Score: 123.2 bits (308), Expect = 9.2e-25 Identity = 64/72 (88.89%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg12209 vs. NCBI nr
Match: XP_023529921.1 (uncharacterized protein LOC111792626 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 118.2 bits (295), Expect = 3.0e-23 Identity = 62/72 (86.11%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg12209 vs. NCBI nr
Match: XP_023004109.1 (uncharacterized protein LOC111497489 isoform X3 [Cucurbita maxima]) HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12 Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of Carg12209 vs. NCBI nr
Match: XP_007202095.1 (transcription initiation factor TFIID subunit 15 [Prunus persica] >ONH98180.1 hypothetical protein PRUPE_7G234000 [Prunus persica]) HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12 Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of Carg12209 vs. NCBI nr
Match: XP_006451191.1 (transcription initiation factor TFIID subunit 15 isoform X2 [Citrus clementina] >XP_006475650.1 transcription initiation factor TFIID subunit 15 isoform X2 [Citrus sinensis] >ESR64431.1 hypothetical protein CICLE_v10008655mg [Citrus clementina] >GAY65790.1 hypothetical protein CUMW_243760 [Citrus unshiu]) HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11 Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0
BLAST of Carg12209 vs. TAIR10
Match: AT4G28990.2 (RNA-binding protein-related) HSP 1 Score: 55.5 bits (132), Expect = 4.3e-08 Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 0
BLAST of Carg12209 vs. TrEMBL
Match: tr|M5VPV5|M5VPV5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G234000 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12 Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of Carg12209 vs. TrEMBL
Match: tr|A0A2N9IUA1|A0A2N9IUA1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55970 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12 Identity = 54/106 (50.94%), Postives = 62/106 (58.49%), Query Frame = 0
BLAST of Carg12209 vs. TrEMBL
Match: tr|V4UED3|V4UED3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10008655mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11 Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0
BLAST of Carg12209 vs. TrEMBL
Match: tr|V4UPQ4|V4UPQ4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10008655mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11 Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0
BLAST of Carg12209 vs. TrEMBL
Match: tr|A0A2H5QME6|A0A2H5QME6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_243760 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11 Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |