Carg12169 (gene) Silver-seed gourd

NameCarg12169
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_054 : 302290 .. 303337 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGGTTAGTACCTGTGAACATCTGTTTTCTGGTTCTCATTTTCACGTTCCTTGTTCAACTATTCCAGGTCAGGTTACTACACTCTGGTTTTAAGATCAGCCAAGTTTTGATATCAGTAATCTAATCATTTAGTGCAGGACCACCTATACAACATTTCCAAATTGATTTTTCTTTATCCCTCTCTCTCCCTCCTCCTTTTCTGTACACAGAGATTTACAAATCTTCATCGTCAACATAAACACATAGATGCTCCTTAGCTTTGTTGTAGTCTTTATAGTTTTAGTTGAATTTCTAACTTCCCATTGAAGGCATGCACTCATCCTAGTCTTTTAGTGAAGCATCCTATGCTGGAACGAGTAACAACCAAATAAAATCTTACCCTTTTGTCTTGGTGATTCGTGCTATCCAAGGAAAGTGAAATGATGAAGAAACAACGCCTTTTCACATATTGTTCAGTGGGCATCAACGAGCTATTATTATCCACACCTTATTTTGTTCGACAGCAGAGACTGGGAGACCGTGCTACTTTAGAGAAAGACGTTCCTTACTCTCGTCGGTATGTCTCTCTCTCTCTTACATTCTAATTCACATTGCTTTCATCGAAGTAGTAACTCTGTGGGATTCTTTCATCTTTGCTACATCCACATGGGCATTGATTTGATTGCATAAAGTTAAAGTGAGTGTCATTAATGTATGCATAACCTTTGTTTAAACACAATTAAGAGTCAAGATATGCTCTAAACTCTCTTAAACCTGGTGGAAGTTGAATAGCCTTTTAACTATTTTCTGTAAATTTTTAATCAGTGTCAATTCAAATTGTTAG

mRNA sequence

AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG

Coding sequence (CDS)

ATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG

Protein sequence

MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAVVSVNSNC
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12169-RACarg12169-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..15
score: 5.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12169CmaCh11G005840Cucurbita maxima (Rimu)carcmaB0047
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12169Wax gourdcarwgoB0040
Carg12169Wax gourdcarwgoB0043
Carg12169Silver-seed gourdcarcarB041
Carg12169Silver-seed gourdcarcarB044
Carg12169Silver-seed gourdcarcarB047
Carg12169Cucumber (Gy14) v2carcgybB0038
Carg12169Cucumber (Gy14) v2carcgybB0041
Carg12169Cucumber (Gy14) v1carcgyB0039
Carg12169Cucumber (Gy14) v1carcgyB0040
Carg12169Cucurbita maxima (Rimu)carcmaB0044
Carg12169Cucurbita maxima (Rimu)carcmaB0048
Carg12169Cucurbita maxima (Rimu)carcmaB0049
Carg12169Cucurbita moschata (Rifu)carcmoB0047
Carg12169Cucurbita moschata (Rifu)carcmoB0050
Carg12169Cucurbita moschata (Rifu)carcmoB0051
Carg12169Cucurbita moschata (Rifu)carcmoB0052
Carg12169Cucurbita pepo (Zucchini)carcpeB0049
Carg12169Cucurbita pepo (Zucchini)carcpeB0053
Carg12169Cucurbita pepo (Zucchini)carcpeB0054
Carg12169Cucurbita pepo (Zucchini)carcpeB0055
Carg12169Wild cucumber (PI 183967)carcpiB0041
Carg12169Wild cucumber (PI 183967)carcpiB0044
Carg12169Cucumber (Chinese Long) v2carcuB0039
Carg12169Cucumber (Chinese Long) v2carcuB0042
Carg12169Cucumber (Chinese Long) v3carcucB0040
Carg12169Cucumber (Chinese Long) v3carcucB0045
Carg12169Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12169Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12169Melon (DHL92) v3.5.1carmeB0035
Carg12169Melon (DHL92) v3.5.1carmeB0039
Carg12169Melon (DHL92) v3.6.1carmedB0036
Carg12169Melon (DHL92) v3.6.1carmedB0040
Carg12169Watermelon (Charleston Gray)carwcgB0037
Carg12169Watermelon (Charleston Gray)carwcgB0043
Carg12169Watermelon (97103) v1carwmB0038
Carg12169Watermelon (97103) v1carwmB0042
Carg12169Watermelon (97103) v2carwmbB0031
Carg12169Watermelon (97103) v2carwmbB0038