Carg12147 (gene) Silver-seed gourd

Overview
NameCarg12147
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger (Ran-binding) family protein
LocationCucurbita_argyrosperma_scaffold_054 : 218338 .. 218903 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTCTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGGTACGCACACTCAACAGTCTGCATTAGTTTCACCTACACAACACTTCAAATTCCTTACCCAAAACCGTAATGTTGTGTTCTACAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTAAGTTCATATCAATTACAATATTTGATGCTGTAGCTCAGTTGGGTCTGTAATACAACTCTGGGCGCTGCAGGTGCTGCAGTTTAA

mRNA sequence

ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTCTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTGCTGCAGTTTAA

Coding sequence (CDS)

ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCCTTCAACTTACACTTACAACAACACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTGGTGCGTTTAAGTCCGCCTATCCTTCTGACTCTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGATGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTGCTGCAGTTTAA

Protein sequence

MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Homology
[Close]
BLAST of Carg12147 vs. NCBI nr
Match: XP_022931684.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 307.8 bits (787), Expect = 1.9e-80
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGAAV 136
           ECFKCKTPRDFGAAV
Sbjct: 121 ECFKCKTPRDFGAAV 135

[Close]
BLAST of Carg12147 vs. NCBI nr
Match: XP_023006411.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 4.2e-80
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTCNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFGAAV 136
           ECFKCKTPRDFGAAV
Sbjct: 121 ECFKCKTPRDFGAAV 135

[Close]
BLAST of Carg12147 vs. NCBI nr
Match: XP_022931677.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 4.6e-79
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYTNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFG 133
           ECFKCKTPRDFG
Sbjct: 121 ECFKCKTPRDFG 132

[Close]
BLAST of Carg12147 vs. NCBI nr
Match: XP_023006418.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 1.0e-78
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTCNNTEALAGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPSDCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120

Query: 121 ECFKCKTPRDFG 133
           ECFKCKTPRDFG
Sbjct: 121 ECFKCKTPRDFG 132

[Close]
BLAST of Carg12147 vs. NCBI nr
Match: XP_023530997.1 (zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 1.3e-78
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEAL GDWYCTTLTCG
Sbjct: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALPGDWYCTTLTCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRT 120
           AHNYASRPNCFKCGAFKSAYP   AAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASR 
Sbjct: 61  AHNYASRPNCFKCGAFKSAYPPHCAAYQYGSDATIPPGWKSGDWICPRMGCGVHNYASRA 120

Query: 121 ECFKCKTPRDFGAAV 136
           ECFKCKTPRDFGAAV
Sbjct: 121 ECFKCKTPRDFGAAV 135

[Close]
BLAST of Carg12147 vs. TAIR10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 211.5 bits (537), Expect = 3.3e-55
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSW+ GDW+C ACQ+ NFKKRE+C +C YPK+GG D STY YN TE +AGDWYC  L CG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQ---YGSD-ATIPPGWKSGDWICPRMGCGVHNY 120
           +HNYASR +C++CG  K  Y       Q   YG+D A  PPGWK+GDW+CPR+GCGVHNY
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRVGCGVHNY 120

Query: 121 ASRTECFKCKTPRDFG 133
           ASR ECFKCKT RD+G
Sbjct: 121 ASRAECFKCKTTRDYG 136

[Close]
BLAST of Carg12147 vs. TAIR10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-31
Identity = 63/159 (39.62%), Postives = 84/159 (52.83%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGG------------PDPSTYTYN-NTEALAGDW 65
           GDW C  C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 66  YCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYG-SDATIPP-------------- 125
           YC    CG HN+A+R +CFKCGA K  +   SAA   G  D  + P              
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 126 ------GWKSGDWICPRMGCGVHNYASRTECFKCKTPRD 131
                  WKSGDWICPR GC  HN+ASR+ECF+C  P++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]
BLAST of Carg12147 vs. TAIR10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-30
Identity = 61/154 (39.61%), Postives = 79/154 (51.30%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCA-------------YPKYGGPDPSTYTY-NNTEALAGD 65
           GDW C +C ++NF++R++C RC              +  +GG   S + +   ++   GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 66  WYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIP--------PG----- 125
           WYCT   CG HN+ASR  CFKCG FK    +          A           PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAXXXXXXXXGPAMFDADIMRSRVPGNGGRS 124

Query: 126 -WKSGDWICPRMGCGVHNYASRTECFKCKTPRDF 132
            WKSGDWIC R+GC  HN+ASR ECF+C  PRDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158

[Close]
BLAST of Carg12147 vs. TAIR10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 47/138 (34.06%), Postives = 59/138 (42.75%), Query Frame = 0 

Query: 3   WSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAH 62
           W SGDWIC  C   N+  R  C +C       P         +EALA +W    L  G  
Sbjct: 126 WRSGDWICR-CGFHNYSSRIQCKKC---NEIAPLALGTKRLASEALAHEWDSKRLNQGYT 185

Query: 63  N-------YASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG---WKSGDWICPRMGCG 122
           +       YAS P     G   +         Q+ + A +  G   W+ GDW+C    C 
Sbjct: 186 SMQTQSAIYASFPG-MSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNCK 245

Query: 123 VHNYASRTECFKCKTPRD 131
            HNYASR EC +CKT RD
Sbjct: 246 NHNYASRAECNRCKTTRD 256

[Close]
BLAST of Carg12147 vs. Swiss-Prot
Match: sp|O13801|YE04_SCHPO (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 41/143 (28.67%), Postives = 66/143 (46.15%), Query Frame = 0 

Query: 6   GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDW-YCTTLTCGAHNY 65
           GDW C  C   NF++R +C RC++P  G    S  T +NT   + D+ Y  +   G+ ++
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFP--GPTHVSAATGSNT--FSPDFPYGNSYGNGSSHF 404

Query: 66  ASRPNCFKCGAFKSAYPSDSAAYQYGSDA------------TIPPGWKSGDWICPRMGCG 125
            +        + ++   SD   +Q G++A             +P  +++GDW C   GCG
Sbjct: 405 IANYGGSVHHSNENTMQSD-LQHQNGNNAVNHHHSSRSFGGNVP--FRAGDWKCGSEGCG 464

Query: 126 VHNYASRTECFKCKTPRDFGAAV 136
            HN+A    C +C   R   A V
Sbjct: 465 YHNFAKNVCCLRCGASRATAAVV 480

[Close]
BLAST of Carg12147 vs. Swiss-Prot
Match: sp|Q01844|EWS_HUMAN (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 100 KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG 133
           ++GDW CP  GCG  N+A RTEC +CK P+  G
Sbjct: 518 RAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEG 550

[Close]
BLAST of Carg12147 vs. Swiss-Prot
Match: sp|Q61545|EWS_MOUSE (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 100 KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG 133
           ++GDW CP  GCG  N+A RTEC +CK P+  G
Sbjct: 517 RAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEG 549

[Close]
BLAST of Carg12147 vs. Swiss-Prot
Match: sp|Q5ZLX5|ZRAB2_CHICK (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 28/84 (33.33%), Postives = 38/84 (45.24%), Query Frame = 0 

Query: 50  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWI 109
           GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 110 CPRMGCGVHNYASRTECFKCKTPR 130
           C    CG  N+A R+EC  C TP+
Sbjct: 71  CKT--CGNVNWARRSECNMCNTPK 92

[Close]
BLAST of Carg12147 vs. Swiss-Prot
Match: sp|O95218|ZRAB2_HUMAN (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04
Identity = 27/84 (32.14%), Postives = 37/84 (44.05%), Query Frame = 0 

Query: 50  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWI 109
           GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ 70

Query: 110 CPRMGCGVHNYASRTECFKCKTPR 130
           C    C   N+A R+EC  C TP+
Sbjct: 71  CKT--CSNVNWARRSECNMCNTPK 92

[Close]
BLAST of Carg12147 vs. TrEMBL
Match: tr|A0A1S3CMY6|A0A1S3CMY6_CUCME (uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.5e-73
Identity = 120/140 (85.71%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+IPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRTECFKCKTPRDFGAAV 136
           YASR ECFKCKTPRDFG AV
Sbjct: 190 YASRMECFKCKTPRDFGGAV 209

[Close]
BLAST of Carg12147 vs. TrEMBL
Match: tr|A0A0A0LWE1|A0A0A0LWE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.5e-73
Identity = 120/140 (85.71%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+IPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRTECFKCKTPRDFGAAV 136
           YASR ECFKCKTPRDFG AV
Sbjct: 190 YASRMECFKCKTPRDFGGAV 209

[Close]
BLAST of Carg12147 vs. TrEMBL
Match: tr|A0A1S3CNB1|A0A1S3CNB1_CUCME (uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.0e-72
Identity = 118/137 (86.13%), Postives = 124/137 (90.51%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+IPPGWKSGDWICPRMGCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRTECFKCKTPRDFG 133
           YASR ECFKCKTPRDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]
BLAST of Carg12147 vs. TrEMBL
Match: tr|A0A1S3CPF6|A0A1S3CPF6_CUCME (uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.0e-72
Identity = 118/137 (86.13%), Postives = 124/137 (90.51%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+IPPGWKSGDWICPRMGCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRTECFKCKTPRDFG 133
           YASR ECFKCKTPRDFG
Sbjct: 189 YASRMECFKCKTPRDFG 205

[Close]
BLAST of Carg12147 vs. TrEMBL
Match: tr|G7JVA8|G7JVA8_MEDTR (Zinc finger (Ran-binding) family protein OS=Medicago truncatula OX=3880 GN=11444927 PE=4 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 9.2e-60
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 0 

Query: 1   MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCG 60
           MSWS GDW+C AC+++NFKKREAC  C YPKYGGPDPSTY YN TE LAGDW+CT++ CG
Sbjct: 1   MSWSGGDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTETLAGDWFCTSMNCG 60

Query: 61  AHNYASRPNCFKCGAFKSAYPSDSAAYQ-----YGSDATIPPGWKSGDWICPRMGCGVHN 120
           AHNYASR NC++CGAFK  Y S           YGSD + PPGWKSGDWICPR+GCG+HN
Sbjct: 61  AHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYGSDCSSPPGWKSGDWICPRIGCGIHN 120

Query: 121 YASRTECFKCKTPRDFGAA 135
           YASRTEC+KCK PRD+G A
Sbjct: 121 YASRTECYKCKMPRDYGGA 139

The following BLAST results are available for this feature:
BLAST of Carg12147 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931684.11.9e-8098.52zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita m... [more]
XP_023006411.14.2e-8098.52zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita m... [more]
XP_022931677.14.6e-7998.48zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita m... [more]
XP_023006418.11.0e-7898.48zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita m... [more]
XP_023530997.11.3e-7896.30zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita p... [more]
BLAST of Carg12147 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G26695.13.3e-5563.97Ran BP2/NZF zinc finger-like superfamily protein[more]
AT5G25490.12.6e-3139.62Ran BP2/NZF zinc finger-like superfamily protein[more]
AT3G15680.12.2e-3039.61Ran BP2/NZF zinc finger-like superfamily protein[more]
AT2G17975.11.9e-1034.06zinc finger (Ran-binding) family protein[more]
BLAST of Carg12147 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O13801|YE04_SCHPO1.9e-0728.67Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra... [more]
sp|Q01844|EWS_HUMAN3.9e-0554.55RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1[more]
sp|Q61545|EWS_MOUSE3.9e-0554.55RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2[more]
sp|Q5ZLX5|ZRAB2_CHICK5.1e-0533.33Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=... [more]
sp|O95218|ZRAB2_HUMAN2.5e-0432.14Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z... [more]
BLAST of Carg12147 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CMY6|A0A1S3CMY6_CUCME9.5e-7385.71uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LWE1|A0A0A0LWE1_CUCSA9.5e-7385.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1[more]
tr|A0A1S3CNB1|A0A1S3CNB1_CUCME8.0e-7286.13uncharacterized protein LOC103502740 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CPF6|A0A1S3CPF6_CUCME8.0e-7286.13uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|G7JVA8|G7JVA8_MEDTR9.2e-6069.78Zinc finger (Ran-binding) family protein OS=Medicago truncatula OX=3880 GN=11444... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12147-RACarg12147-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 50..76
e-value: 1.8E-4
score: 30.8
coord: 6..30
e-value: 2.1E-4
score: 30.7
coord: 102..128
e-value: 9.0E-9
score: 45.1
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 100..129
e-value: 3.1E-9
score: 35.9
coord: 49..77
e-value: 8.2E-6
score: 24.9
coord: 5..31
e-value: 4.6E-6
score: 25.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 52..73
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 8..27
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 104..125
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 100..131
score: 10.241
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 4..33
score: 9.089
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 48..79
score: 9.145
NoneNo IPR availableGENE3DG3DSA:4.10.1060.10coord: 40..81
e-value: 6.0E-13
score: 49.8
coord: 94..133
e-value: 4.2E-14
score: 53.5
coord: 1..35
e-value: 2.9E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR23111ZINC FINGER PROTEINcoord: 1..134
NoneNo IPR availablePANTHERPTHR23111:SF41SUBFAMILY NOT NAMEDcoord: 1..134
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILYSSF90209Ran binding protein zinc finger-likecoord: 2..34
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILYSSF90209Ran binding protein zinc finger-likecoord: 44..78
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILYSSF90209Ran binding protein zinc finger-likecoord: 96..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12147Cla012266Watermelon (97103) v1carwmB0040
Carg12147Csa1G306810Cucumber (Chinese Long) v2carcuB0034
Carg12147Csa2G006080Cucumber (Chinese Long) v2carcuB0042
Carg12147MELO3C004523Melon (DHL92) v3.5.1carmeB0039
Carg12147MELO3C026642Melon (DHL92) v3.5.1carmeB0035
Carg12147ClCG06G010900Watermelon (Charleston Gray)carwcgB0041
Carg12147ClCG11G002870Watermelon (Charleston Gray)carwcgB0037
Carg12147CSPI01G18610Wild cucumber (PI 183967)carcpiB0036
Carg12147CSPI02G01560Wild cucumber (PI 183967)carcpiB0044
Carg12147Cucsa.131920Cucumber (Gy14) v1carcgyB0041
Carg12147CmaCh11G005630Cucurbita maxima (Rimu)carcmaB0047
Carg12147CmaCh10G005640Cucurbita maxima (Rimu)carcmaB0045
Carg12147CmaCh12G012220Cucurbita maxima (Rimu)carcmaB0048
Carg12147CmoCh12G012500Cucurbita moschata (Rifu)carcmoB0051
Carg12147CmoCh11G005650Cucurbita moschata (Rifu)carcmoB0050
Carg12147CmoCh10G006070Cucurbita moschata (Rifu)carcmoB0047
Carg12147Lsi06G009460Bottle gourd (USVL1VR-Ls)carlsiB035
Carg12147Cp4.1LG18g04690Cucurbita pepo (Zucchini)carcpeB0053
Carg12147Cp4.1LG11g10860Cucurbita pepo (Zucchini)carcpeB0049
Carg12147CsGy1G018640Cucumber (Gy14) v2carcgybB0034
Carg12147CsGy2G001580Cucumber (Gy14) v2carcgybB0041
Carg12147MELO3C004523.2Melon (DHL92) v3.6.1carmedB0040
Carg12147MELO3C026642.2Melon (DHL92) v3.6.1carmedB0036
Carg12147CsaV3_2G002710Cucumber (Chinese Long) v3carcucB0045
Carg12147CsaV3_1G029820Cucumber (Chinese Long) v3carcucB0036
Carg12147Cla97C11G209350Watermelon (97103) v2carwmbB0031
Carg12147Cla97C06G120120Watermelon (97103) v2carwmbB0035
Carg12147Bhi06G001671Wax gourdcarwgoB0037
Carg12147Bhi02G000866Wax gourdcarwgoB0045
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12147Silver-seed gourdcarcarB039
Carg12147Silver-seed gourdcarcarB041
Carg12147Silver-seed gourdcarcarB043
Carg12147Silver-seed gourdcarcarB044
Carg12147Silver-seed gourdcarcarB047
Carg12147Cucumber (Gy14) v1carcgyB0044
Carg12147Cucurbita maxima (Rimu)carcmaB0044
Carg12147Cucurbita maxima (Rimu)carcmaB0049
Carg12147Cucurbita maxima (Rimu)carcmaB0050
Carg12147Cucurbita moschata (Rifu)carcmoB0048
Carg12147Cucurbita moschata (Rifu)carcmoB0052
Carg12147Cucurbita pepo (Zucchini)carcpeB0050
Carg12147Cucurbita pepo (Zucchini)carcpeB0051
Carg12147Cucurbita pepo (Zucchini)carcpeB0054
Carg12147Wild cucumber (PI 183967)carcpiB0043
Carg12147Cucumber (Chinese Long) v2carcuB0041
Carg12147Cucumber (Chinese Long) v3carcucB0044
Carg12147Bottle gourd (USVL1VR-Ls)carlsiB032
Carg12147Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12147Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12147Melon (DHL92) v3.5.1carmeB0038
Carg12147Melon (DHL92) v3.6.1carmedB0039
Carg12147Watermelon (Charleston Gray)carwcgB0036
Carg12147Watermelon (Charleston Gray)carwcgB0043
Carg12147Watermelon (97103) v1carwmB0038
Carg12147Watermelon (97103) v1carwmB0042
Carg12147Watermelon (97103) v2carwmbB0030
Carg12147Wax gourdcarwgoB0040
Carg12147Wax gourdcarwgoB0043