Carg12146 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12146
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_054 : 214334 .. 215829 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGACGGCTCTCGATGAGTCTGTCAGCGGTTATGCCATTAGTTTTCTTTGTCCGAATGATTCATTCGGGAGTTAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGTATGTCTAGAAGCTTGGGTTTGGTTTGATGTGTATATTCATAATTCGCTCATCATCAATGCCCATTTGGTGTTTGATCAAAGTAATTTAAGGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGGTGAAATGCCTGTTAGAGACGTGGTATCTTGGAATGCTATGGTTGCTGGCTATGGGCAAACTAGTCGGTCCAAGAGGGATCGTTAATGTTTGAAGAAACGAGGAAGGCAAATGTTACCCGTCTCTGTTCTTTCTGCTTGTGCTAAGTCAAATGCTCTAGATTTTGGAAACTCGACACGCTTTTGGATTGAAGATTTTGGGCTTCATTCGAATCTTAAGCTTGTTAATGCACTTATTGTGATCTTCAGACTGCTCGTGAGTTGTTTGACGATATGCCTGAAAGGGATGTGGTCTCATGGACTGTAATGATCAGAGTTTACACTCACATGAGCAGCTATACATGTTTATATAATCATAAACTTCGACTCTGCCAGCACCTCTCTTTGGACGAGTCTGGTCGATATGTATGCTAAATGCGGCAAGATGGCAGGCTTTCCGATCATACGACACTTCACTTAATTTTGCATGTAAACTCGGTTGCCGATCATGTAATTGTAACCTGCTATAAATTTTTATTTAAAAAAATATATCCCAGTATAGTTCCCAACAGTAAACTCTTCCCCCACAGTGGAATTTGAGCCTGTGGCTGATGAACAAACTACATCTTTGTGCCGAGGGAAGCTGAGGGAAGGTAAAGCTGGTATGCCCTTTGTGCCGAGGTAAGGTATAAAAGTGGGTTGTTGATGAGCATGCTCGTCAGTTCATGAATGCAAAATCAAGAAGTTGTTCTTGTGAGACATGTAACTTCAGCGGAACCTATACAGATCTTAGGAAGTACGCAAGGAAGGAGTGTCCTCTTGTTCGTCCATCAGAAGTCGACCCAGAACGACAGCATAATTGGAGACGAATTGAGCTAGCACACTACAACCATCATTTGGAGAGGATAGGGTTGATGGTGATAGTATTTTGCCCATTGATAATGGGGGCTGGCTCACAGTTTTTTTTTCCTTATTCGAGTTTTTAGACCTGAATCCGGTAGAAGGAGCAGCAGTTGGTCTAATGTGTCTAGAGCTAGAGAGAAACCAAGTTATAGGAGGCGAGAGTTATGATTGGGAAATAGGATCATCTTCCAGAGATGAAGATAATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGA

mRNA sequence

ATGATTCGACGGCTCTCGATGAGTCTGTCAGCGGTTATGCCATTAGTTTTCTTTGTCCGAATGATTCATTCGGGAGTTAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGGTGAAATGCCTGTTAGAGACGTGACTGCTCGTGAGTTGTTTGACGATATGCCTGAAAGGGATGTGGTCTCATGGACTGTAATGATCAGAGTTTACACTCACATGAGCAGCTATACATTGGAATTTGAGCCTGTGGCTGATGAACAAACTACATCTTTGTGCCGAGGGAAGCTGAGGGAAGGTAAAGCTGACCTGAATCCGGTAGAAGGAGCAGCAGTTGGTCTAATGTGTCTAGAGCTAGAGAGAAACCAAGTTATAGGAGGCGAGAGTTATGATTGGGAAATAGGATCATCTTCCAGAGATGAAGATAATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGA

Coding sequence (CDS)

ATGATTCGACGGCTCTCGATGAGTCTGTCAGCGGTTATGCCATTAGTTTTCTTTGTCCGAATGATTCATTCGGGAGTTAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGGTGAAATGCCTGTTAGAGACGTGACTGCTCGTGAGTTGTTTGACGATATGCCTGAAAGGGATGTGGTCTCATGGACTGTAATGATCAGAGTTTACACTCACATGAGCAGCTATACATTGGAATTTGAGCCTGTGGCTGATGAACAAACTACATCTTTGTGCCGAGGGAAGCTGAGGGAAGGTAAAGCTGACCTGAATCCGGTAGAAGGAGCAGCAGTTGGTCTAATGTGTCTAGAGCTAGAGAGAAACCAAGTTATAGGAGGCGAGAGTTATGATTGGGAAATAGGATCATCTTCCAGAGATGAAGATAATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGA

Protein sequence

MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRADAISFTAPIAGYAMWGNTDRARKVFGEMPVRDVTARELFDDMPERDVVSWTVMIRVYTHMSSYTLEFEPVADEQTTSLCRGKLREGKADLNPVEGAAVGLMCLELERNQVIGGESYDWEIGSSSRDEDNDSSDDGSGSSRHQDRTQRQTTPDNPP

Homology

[Close]

BLAST of Carg12146 vs. NCBI nr
Match: XP_004150015.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Cucumis sativus] >KGN65308.1 hypothetical protein Csa_1G306800 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 7.3e-15
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LSMSLS  + LVFFVRMI+SGV+P+SYTFPFL KSCAKLASAH GKQI A      
Sbjct: 100 MIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLG 159

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ VF +   R
Sbjct: 160 FVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR 193

[Close]

BLAST of Carg12146 vs. NCBI nr
Match: XP_008465017.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LSMSLS V+ LVFFVRMI+SGV+P+SYTFPFL KSCAKLASA  GKQI A      
Sbjct: 100 MIRGLSMSLSPVLALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLG 159

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ +F +   R
Sbjct: 160 FVSDVFIHTSLINMYAQSGEMNNAQLIFDQSNFR 193

[Close]

BLAST of Carg12146 vs. NCBI nr
Match: XP_022961045.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LS+SLS V+ LVFFVRMIH+GV+P+SYTFPFL KSCAKLASA  GKQI A      
Sbjct: 97  MIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLG 156

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ VF +   R
Sbjct: 157 FVSDVFIHTSLINMYAQSGEINYAQLVFDQSNFR 190

[Close]

BLAST of Carg12146 vs. NCBI nr
Match: XP_023515625.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LS+SLS V+ LVFFVRMIH+GV+P+SYTFPFL KSCAKLASA  GKQI A      
Sbjct: 97  MIRGLSISLSPVLALVFFVRMIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLG 156

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ VF +   R
Sbjct: 157 FVSDVFIHTSLINMYAQSGEINYAQLVFDQSNFR 190

[Close]

BLAST of Carg12146 vs. NCBI nr
Match: XP_023003696.1 (uncharacterized protein LOC111497207 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 43/56 (76.79%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 143 DLNPVEGAAVGLMCLELERNQVIGGESYDWEIGSSSRDEDXXXXXXXXXXXRHQDR 199
           DLNPVEGAAVGLM LELE NQVIGGESYDWEIGSSSRDED           RHQDR
Sbjct: 88  DLNPVEGAAVGLMYLELESNQVIGGESYDWEIGSSSRDEDNDPSDDGSGSSRHQDR 143

[Close]

BLAST of Carg12146 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 43/129 (33.33%), Postives = 56/129 (43.41%), Query Frame = 0


Query: 15  LVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA---------DAISFTAPIAG 74
           ++ F+RM++SG+ PD YTFPF   +CAK  +   G QI           D     + +  
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 75  YAMWGNTDRARKVFGEMPVRDVTXXXXXXXXXXXXXXXWTVMIRVYTH----MSSYTLEF 131
           YA  G  D ARKVF EM  R+V                WT MI  Y        +  L F
Sbjct: 179 YAECGELDSARKVFDEMSERNVV--------------SWTSMICGYARRDFAKDAVDLFF 233

[Close]

BLAST of Carg12146 vs. TAIR10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-09
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR  + +  A   L  + +M++SGV+P  YT+PF+ K+CA L +   GK I +      
Sbjct: 74  MIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSD 133

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVRDV 88
              D    TA +  YA  G  + A KVF EMP RD+
Sbjct: 134 FATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDM 169

[Close]

BLAST of Carg12146 vs. TAIR10
Match: AT3G56550.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGV-KPDSYTFPFLFKSCAKLASAH-----GGKQIRA 60
           +IR  S S S +  ++F+ RM+ S V +PD +TF F  KSC ++ S        G  IR+
Sbjct: 77  LIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRS 136

Query: 61  ----DAISFTAPIAGYAMWGNTDRARKVFGEMPVRDVTXXXXXXXXXXXXXXXWTVMIRV 115
               DAI  T+ +  Y+  G+ + A KVF EMPVRD+                W VMI  
Sbjct: 137 GFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLV--------------SWNVMICC 186

[Close]

BLAST of Carg12146 vs. TAIR10
Match: AT4G38010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08
Identity = 29/75 (38.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 22  IHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA---------DAISFTAPIAGYAMWGNT 81
           + +G  PD +TFP +FK+C K +    GKQI           D     + +  Y + G +
Sbjct: 98  VSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGES 157

Query: 82  DRARKVFGEMPVRDV 88
             A KVFGEMPVRDV
Sbjct: 158 RNACKVFGEMPVRDV 172

[Close]

BLAST of Carg12146 vs. TAIR10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-07
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           M R  ++S   V  L  +V MI  G+ P+SYTFPF+ KSCAK  +   G+QI        
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I+ Y   G  + A KVF + P R
Sbjct: 165 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198

[Close]

BLAST of Carg12146 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 43/129 (33.33%), Postives = 56/129 (43.41%), Query Frame = 0


Query: 15  LVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA---------DAISFTAPIAG 74
           ++ F+RM++SG+ PD YTFPF   +CAK  +   G QI           D     + +  
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 75  YAMWGNTDRARKVFGEMPVRDVTXXXXXXXXXXXXXXXWTVMIRVYTH----MSSYTLEF 131
           YA  G  D ARKVF EM  R+V                WT MI  Y        +  L F
Sbjct: 179 YAECGELDSARKVFDEMSERNVV--------------SWTSMICGYARRDFAKDAVDLFF 233

[Close]

BLAST of Carg12146 vs. Swiss-Prot
Match: sp|Q9LUS3|PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR  + +  A   L  + +M++SGV+P  YT+PF+ K+CA L +   GK I +      
Sbjct: 74  MIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSD 133

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVRDV 88
              D    TA +  YA  G  + A KVF EMP RD+
Sbjct: 134 FATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDM 169

[Close]

BLAST of Carg12146 vs. Swiss-Prot
Match: sp|Q9LXY5|PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-07
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGV-KPDSYTFPFLFKSCAKLASAH-----GGKQIRA 60
           +IR  S S S +  ++F+ RM+ S V +PD +TF F  KSC ++ S        G  IR+
Sbjct: 77  LIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRS 136

Query: 61  ----DAISFTAPIAGYAMWGNTDRARKVFGEMPVRDVTXXXXXXXXXXXXXXXWTVMIRV 115
               DAI  T+ +  Y+  G+ + A KVF EMPVRD+                W VMI  
Sbjct: 137 GFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLV--------------SWNVMICC 186

[Close]

BLAST of Carg12146 vs. Swiss-Prot
Match: sp|Q9SZK1|PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 29/75 (38.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 22  IHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA---------DAISFTAPIAGYAMWGNT 81
           + +G  PD +TFP +FK+C K +    GKQI           D     + +  Y + G +
Sbjct: 98  VSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGES 157

Query: 82  DRARKVFGEMPVRDV 88
             A KVFGEMPVRDV
Sbjct: 158 RNACKVFGEMPVRDV 172

[Close]

BLAST of Carg12146 vs. Swiss-Prot
Match: sp|Q9LN01|PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           M R  ++S   V  L  +V MI  G+ P+SYTFPF+ KSCAK  +   G+QI        
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I+ Y   G  + A KVF + P R
Sbjct: 165 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198

[Close]

BLAST of Carg12146 vs. TrEMBL
Match: tr|A0A0A0LU28|A0A0A0LU28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306800 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LSMSLS  + LVFFVRMI+SGV+P+SYTFPFL KSCAKLASAH GKQI A      
Sbjct: 100 MIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLG 159

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ VF +   R
Sbjct: 160 FVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR 193

[Close]

BLAST of Carg12146 vs. TrEMBL
Match: tr|A0A1S3CMX0|A0A1S3CMX0_CUCME (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502738 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           MIR LSMSLS V+ LVFFVRMI+SGV+P+SYTFPFL KSCAKLASA  GKQI A      
Sbjct: 100 MIRGLSMSLSPVLALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLG 159

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
              D    T+ I  YA  G  + A+ +F +   R
Sbjct: 160 FVSDVFIHTSLINMYAQSGEMNNAQLIFDQSNFR 193

[Close]

BLAST of Carg12146 vs. TrEMBL
Match: tr|M5VVN7|M5VVN7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa022872mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIR------- 60
           +IR  S+S  ++  + F+V M+ SGV+P+SYTFPFL KSCAK A++H GKQI        
Sbjct: 104 IIRGFSLSSKSIQAVEFYVLMLLSGVEPNSYTFPFLLKSCAKFAASHEGKQIHGHVLKLG 163

Query: 61  --ADAISFTAPIAGYA------MWGNTDRARKVFGEMPVRDV 88
             +DA   T+ I  YA      MWG  D AR +F E+P RDV
Sbjct: 164 LDSDAFVHTSLINMYAQNVLSEMWGCMDDARYLFDEIPGRDV 205

[Close]

BLAST of Carg12146 vs. TrEMBL
Match: tr|A0A251NG21|A0A251NG21_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G239300 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-10
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIR------- 60
           +IR  S+S  ++  + F+V M+ SGV+P+SYTFPFL KSCAK A++H GKQI        
Sbjct: 59  IIRGFSLSSKSIQAVEFYVLMLLSGVEPNSYTFPFLLKSCAKFAASHEGKQIHGHVLKLG 118

Query: 61  --ADAISFTAPIAGYAMWGNTDRARKVFGEMPVR 86
             +DA   T+ I  YA  G  D AR VF +   R
Sbjct: 119 LDSDAFVHTSLINMYAQNGELDNARLVFDKSSFR 152

[Close]

BLAST of Carg12146 vs. TrEMBL
Match: tr|A0A2P4LK33|A0A2P4LK33_QUESU (Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_24929 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1   MIRRLSMSLSAVMPLVFFVRMIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRA------ 60
           +IR  S+S + ++ L  FVRMI  G +P+SYTFPFLFKSCAK+ + H GKQI A      
Sbjct: 107 IIRGCSLSSNPIVALELFVRMILCGTEPNSYTFPFLFKSCAKIGATHEGKQIHAHVVKLG 166

Query: 61  ---DAISFTAPIAGYAMWGNTDRARKVF 80
              DA   T+ I  YA  G    AR VF
Sbjct: 167 LENDAFVHTSLINMYAQNGELGNARLVF 194

The following BLAST results are available for this feature:

BLAST of Carg12146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150015.1	7.3e-15	56.38	PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Cucumis sativu...	[more]
XP_008465017.1	2.8e-14	55.32	PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic ...	[more]
XP_022961045.1	4.7e-14	55.32	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ...	[more]
XP_023515625.1	4.7e-14	55.32	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ...	[more]
XP_023003696.1	3.1e-13	76.79	uncharacterized protein LOC111497207 [Cucurbita maxima]	[more]

BLAST of Carg12146 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22690.1	3.3e-09	33.33	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe...	[more]
AT3G16610.1	5.6e-09	37.50	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G56550.1	2.8e-08	34.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G38010.1	6.1e-08	38.67	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G08070.1	2.3e-07	37.23	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg12146 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LUJ2\|PP249_ARATH	5.9e-08	33.33	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LUS3\|PP237_ARATH	1.0e-07	37.50	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LXY5\|PP284_ARATH	5.0e-07	34.68	Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SZK1\|PP355_ARATH	1.1e-06	38.67	Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LN01\|PPR21_ARATH	4.2e-06	37.23	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]

BLAST of Carg12146 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LU28\|A0A0A0LU28_CUCSA	4.8e-15	56.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306800 PE=4 SV=1	[more]
tr\|A0A1S3CMX0\|A0A1S3CMX0_CUCME	1.8e-14	55.32	pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis ...	[more]
tr\|M5VVN7\|M5VVN7_PRUPE	8.5e-12	46.08	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa022872mg PE=4 SV=1	[more]
tr\|A0A251NG21\|A0A251NG21_PRUPE	7.9e-10	44.68	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G239300 PE=4 SV=1	[more]
tr\|A0A2P4LK33\|A0A2P4LK33_QUESU	3.0e-09	47.73	Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=5...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12146-RA	Carg12146-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 15..117 e-value: 3.9E-12 score: 48.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 58..86 e-value: 1.9E-4 score: 19.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 63..85 e-value: 0.011 score: 15.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..28 score: 5.053
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 55..89 score: 8.583
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..201
None	No IPR available	PANTHER	PTHR24015:SF527	SUBFAMILY NOT NAMED	coord: 1..60 coord: 88..118
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..60 coord: 88..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12146	CmaCh11G005610	Cucurbita maxima (Rimu)	carcmaB0047
Carg12146	CmoCh11G005630	Cucurbita moschata (Rifu)	carcmoB0050
Carg12146	Cp4.1LG04g09730	Cucurbita pepo (Zucchini)	carcpeB0054
Carg12146	Cla97C06G120110	Watermelon (97103) v2	carwmbB0035
Carg12146	Bhi02G000867	Wax gourd	carwgoB0045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12146	Silver-seed gourd	carcarB039
Carg12146	Silver-seed gourd	carcarB041
Carg12146	Silver-seed gourd	carcarB043
Carg12146	Silver-seed gourd	carcarB044
Carg12146	Silver-seed gourd	carcarB047
Carg12146	Cucumber (Gy14) v2	carcgybB0034
Carg12146	Cucumber (Gy14) v2	carcgybB0041
Carg12146	Cucumber (Gy14) v1	carcgyB0041
Carg12146	Cucumber (Gy14) v1	carcgyB0044
Carg12146	Cucurbita maxima (Rimu)	carcmaB0044
Carg12146	Cucurbita maxima (Rimu)	carcmaB0045
Carg12146	Cucurbita maxima (Rimu)	carcmaB0048
Carg12146	Cucurbita maxima (Rimu)	carcmaB0049
Carg12146	Cucurbita maxima (Rimu)	carcmaB0050
Carg12146	Cucurbita moschata (Rifu)	carcmoB0047
Carg12146	Cucurbita moschata (Rifu)	carcmoB0048
Carg12146	Cucurbita moschata (Rifu)	carcmoB0051
Carg12146	Cucurbita moschata (Rifu)	carcmoB0052
Carg12146	Cucurbita pepo (Zucchini)	carcpeB0049
Carg12146	Cucurbita pepo (Zucchini)	carcpeB0050
Carg12146	Cucurbita pepo (Zucchini)	carcpeB0051
Carg12146	Cucurbita pepo (Zucchini)	carcpeB0053
Carg12146	Wild cucumber (PI 183967)	carcpiB0036
Carg12146	Wild cucumber (PI 183967)	carcpiB0043
Carg12146	Wild cucumber (PI 183967)	carcpiB0044
Carg12146	Cucumber (Chinese Long) v2	carcuB0041
Carg12146	Cucumber (Chinese Long) v2	carcuB0034
Carg12146	Cucumber (Chinese Long) v2	carcuB0042
Carg12146	Cucumber (Chinese Long) v3	carcucB0036
Carg12146	Cucumber (Chinese Long) v3	carcucB0044
Carg12146	Cucumber (Chinese Long) v3	carcucB0045
Carg12146	Bottle gourd (USVL1VR-Ls)	carlsiB032
Carg12146	Bottle gourd (USVL1VR-Ls)	carlsiB033
Carg12146	Bottle gourd (USVL1VR-Ls)	carlsiB035
Carg12146	Bottle gourd (USVL1VR-Ls)	carlsiB037
Carg12146	Melon (DHL92) v3.5.1	carmeB0035
Carg12146	Melon (DHL92) v3.5.1	carmeB0038
Carg12146	Melon (DHL92) v3.5.1	carmeB0039
Carg12146	Melon (DHL92) v3.6.1	carmedB0036
Carg12146	Melon (DHL92) v3.6.1	carmedB0039
Carg12146	Melon (DHL92) v3.6.1	carmedB0040
Carg12146	Watermelon (Charleston Gray)	carwcgB0036
Carg12146	Watermelon (Charleston Gray)	carwcgB0037
Carg12146	Watermelon (Charleston Gray)	carwcgB0041
Carg12146	Watermelon (Charleston Gray)	carwcgB0043
Carg12146	Watermelon (97103) v1	carwmB0038
Carg12146	Watermelon (97103) v1	carwmB0040
Carg12146	Watermelon (97103) v1	carwmB0042
Carg12146	Watermelon (97103) v2	carwmbB0030
Carg12146	Watermelon (97103) v2	carwmbB0031
Carg12146	Wax gourd	carwgoB0037
Carg12146	Wax gourd	carwgoB0040
Carg12146	Wax gourd	carwgoB0043