Carg12060 (gene) Silver-seed gourd

Overview
NameCarg12060
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionnovel plant snare 13
LocationCucurbita_argyrosperma_scaffold_037 : 858158 .. 858769 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATAGCTGAACAACTCTGGCTCTGTCTCCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCGGTCCAGACTCAGAGTCGGAGACTGTTATGGAATTCCAGTTAAAAACCCGAGTTACGAAAGAGAATCATCATCCATATCTTGAAACTCGCCTACTCTTCTGGGATTGCTCTGATGGGCTGAATGATGGAAAGAAGGGAAGGGATTGGCCATTCTTCATTCAAACATAGGCAAAAGGAGGGGGGGGGGGGACAGCTTAGCCAGGTTCTTTCATACACCTATCCAAATTCAAAATGATTATCCCTTTACTTCAAAGCTACAAACTGTATTCACTTTCACTGGGTCCTGTCCTGTCCTGTCCTGTCCTGAAATTTTACTGATTTTTATGTCTTGAATAATCTTAATCACTCATATATTGTATCATTTTGCATTCATGTTTGGGGAGTCGTTACTATATATATCATTATCCTAAGCATTAAATGTAGTAAGATGCTCCCCATTTTTTCGAGTTCAATTATTACAAGTCTTGAAGCGTGGCCTAGAATGGGGAATGATGATCGTGTTATGGGTGCGAACGGGTAA

mRNA sequence

ATGTCTATAGCTGAACAACTCTGGCTCTGTCTCCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCGGTCCAGACTCAGAGTCGGAGACTTAAGATGCTCCCCATTTTTTCGAGTTCAATTATTACAAGTCTTGAAGCGTGGCCTAGAATGGGGAATGATGATCGTGTTATGGGTGCGAACGGGTAA

Coding sequence (CDS)

ATGTCTATAGCTGAACAACTCTGGCTCTGTCTCCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCGGTCCAGACTCAGAGTCGGAGACTTAAGATGCTCCCCATTTTTTCGAGTTCAATTATTACAAGTCTTGAAGCGTGGCCTAGAATGGGGAATGATGATCGTGTTATGGGTGCGAACGGGTAA

Protein sequence

MSIAEQLWLCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKMLPIFSSSIITSLEAWPRMGNDDRVMGANG
Homology
[Close]
BLAST of Carg12060 vs. TAIR10
Match: AT3G17440.1 (novel plant snare 13)

HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 9   LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML 43
           + + ++VNPNNKDI+DIPGLAPP   QSR+L  L
Sbjct: 232 IIIVKIVNPNNKDIRDIPGLAPP--AQSRKLLYL 263

[Close]
BLAST of Carg12060 vs. TAIR10
Match: AT1G48240.1 (novel plant snare 12)

HSP 1 Score: 43.5 bits (101), Expect = 6.2e-05
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 9   LCLPQLVNPNNKDIQDIPGLAPPVQTQ 36
           + + ++VNPNNKDI+DIPGLAPP Q++
Sbjct: 232 IIIVKIVNPNNKDIRDIPGLAPPAQSR 258

[Close]
BLAST of Carg12060 vs. Swiss-Prot
Match: sp|Q9LRP1|NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 9   LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML 43
           + + ++VNPNNKDI+DIPGLAPP   QSR+L  L
Sbjct: 232 IIIVKIVNPNNKDIRDIPGLAPP--AQSRKLLYL 263

The following BLAST results are available for this feature:
BLAST of Carg12060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17440.14.7e-0561.76novel plant snare 13[more]
AT1G48240.16.2e-0562.96novel plant snare 12[more]
BLAST of Carg12060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LRP1|NPS13_ARATH8.5e-0461.76Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1[more]
BLAST of Carg12060 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12060-RACarg12060-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12060Silver-seed gourdcarcarB520
Carg12060Silver-seed gourdcarcarB521
Carg12060Cucumber (Gy14) v2carcgybB0567
Carg12060Cucumber (Gy14) v2carcgybB0568
Carg12060Cucumber (Gy14) v1carcgyB0641
Carg12060Cucumber (Gy14) v1carcgyB0642
Carg12060Cucurbita maxima (Rimu)carcmaB0786
Carg12060Cucurbita maxima (Rimu)carcmaB0788
Carg12060Cucurbita maxima (Rimu)carcmaB0789
Carg12060Cucurbita maxima (Rimu)carcmaB0791
Carg12060Cucurbita moschata (Rifu)carcmoB0766
Carg12060Cucurbita moschata (Rifu)carcmoB0768
Carg12060Cucurbita moschata (Rifu)carcmoB0770
Carg12060Cucurbita pepo (Zucchini)carcpeB0802
Carg12060Cucurbita pepo (Zucchini)carcpeB0804
Carg12060Cucurbita pepo (Zucchini)carcpeB0807
Carg12060Wild cucumber (PI 183967)carcpiB0597
Carg12060Wild cucumber (PI 183967)carcpiB0598
Carg12060Cucumber (Chinese Long) v2carcuB0592
Carg12060Cucumber (Chinese Long) v2carcuB0593
Carg12060Cucumber (Chinese Long) v3carcucB0599
Carg12060Cucumber (Chinese Long) v3carcucB0600
Carg12060Bottle gourd (USVL1VR-Ls)carlsiB512
Carg12060Bottle gourd (USVL1VR-Ls)carlsiB513
Carg12060Melon (DHL92) v3.5.1carmeB0568
Carg12060Melon (DHL92) v3.5.1carmeB0570
Carg12060Melon (DHL92) v3.6.1carmedB0575
Carg12060Melon (DHL92) v3.6.1carmedB0577
Carg12060Watermelon (Charleston Gray)carwcgB0548
Carg12060Watermelon (Charleston Gray)carwcgB0549
Carg12060Watermelon (97103) v1carwmB0560
Carg12060Watermelon (97103) v1carwmB0561
Carg12060Watermelon (97103) v2carwmbB0586
Carg12060Wax gourdcarwgoB0670