Carg11954 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11954
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translation machinery-associated protein
Location	Cucurbita_argyrosperma_scaffold_037 : 44868 .. 46096 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGAAACTGTTTATGGATGAAAGCCTCCGAGACCAGTTCTGTCAATCCAATTCTCACTACGGCAGTGGTAACTGTTCTAGGTGAATCTTTCACTCAATGTCAGTGCCGTGAGGTTTCAAAGAACTTGTAGCCATATGAACATATCGGTTCATAATTGATCTAACTTTGAAGTCAATTACTTTATCTGTCTAATAAAAAAAACAAAGCTCATTTTGCTATAATGAGATTTTCCAAGTTCGAATCCCAAAGAAATTATCATATAAATTACCAAAGCACATAAGAAACAACAAGTTACGAGATAGATGGCCTTAAATGCGACCCAGCCTGCATTACATTGTATTTCAGTCATTGAACTTCCTGCCCTTCTTTCAGAGGAAAAGGCAGTGCTACTTGAAAATGTAACACATTTTCAATTCAGAGATAAAGTTAAACTTTGCCATGTTTACAACACTGACTATTTGTCAGCTTAAAAACTAGAACCGCCTGATTAAAATAATTTTAACTCAATCTCTATAGTATCCCAAGTCCCACCAACCTCCACCACCTTTATGACCGGACGGAAAAAACCTTCTACAGAATCTCTTAATATTATGTACGGTAAAAAAGGTTAGCAATTGATTTTATTGTCACTTTGAGGATGCAAGTAACACATCAATTGATCAAAAGTAATCAGTGGAGCAGGGCCATTTCCAAAAAAAATTTAACCCAATACCATGTTAAGTTTCAAGCTTGCTTAGATGTTTATATCTAATTTGGAGTTTTCTCAAGGAAGAAAATTTAAAGTAACCCAGTAAAGCGATAGACCAAACAACCGTGATATTTATGTGCATCACCCTTATCCAGAATTATTAAGCCAAATGACAGGTATACTACATATCAATTTACAATGCTATAAATGAAAGTCAATTTAAGTCATAAAATCCAGGAGGAAAGGAAATTATATCCAGAGAGTGAACTGAAATAGAATAATATCCCGCAGTTGTATATCAGTGAATCAAGCCATCAATTGCCGCGCATGAGCATCCCTAGCAACATCTCAGCCATGTCATACAAGCTAGGAAGGAAAGCAAACTCAAGGTTGAGAAGAAAGATTACAACGAGGTTGATATGGCCAAAATTCAAAAGATGAAGGAAGAGGAAAAGACGCTCAGGGAGTTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGATGCTAGGCTTAAGAAGAGTGGGAAGAAATGA

mRNA sequence

ATGCCAAGAAACTGTTTATGGATGAAAGCCTCCGAGACCAGTTCTGTCAATCCAATTCTCACTACGGCAGTGCAACATCTCAGCCATGTCATACAAGCTAGGAAGGAAAGCAAACTCAAGGTTGAGAAGAAAGATTACAACGAGGTTGATATGGCCAAAATTCAAAAGATGAAGGAAGAGGAAAAGACGCTCAGGGAGTTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGATGCTAGGCTTAAGAAGAGTGGGAAGAAATGA

Coding sequence (CDS)

ATGCCAAGAAACTGTTTATGGATGAAAGCCTCCGAGACCAGTTCTGTCAATCCAATTCTCACTACGGCAGTGCAACATCTCAGCCATGTCATACAAGCTAGGAAGGAAAGCAAACTCAAGGTTGAGAAGAAAGATTACAACGAGGTTGATATGGCCAAAATTCAAAAGATGAAGGAAGAGGAAAAGACGCTCAGGGAGTTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGATGCTAGGCTTAAGAAGAGTGGGAAGAAATGA

Protein sequence

MPRNCLWMKASETSSVNPILTTAVQHLSHVIQARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK

Homology

[Close]

BLAST of Carg11954 vs. NCBI nr
Match: XP_022946455.1 (uncharacterized protein LOC111450508 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 25 QHLSHVIQARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKK 84
          QHLSHVIQARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGT GDARLKK
Sbjct: 33 QHLSHVIQARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTLGDARLKK 92

Query: 85 SGKK 89
           GKK
Sbjct: 93 RGKK 96

[Close]

BLAST of Carg11954 vs. NCBI nr
Match: XP_022924253.1 (translation machinery-associated protein 7-like [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 32  QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
           +A+   + KVEKKDY+EVDMA IQK K+EEK LRE RAKAQQKG FG A LKKSGKK
Sbjct: 52  KAKPLKQPKVEKKDYDEVDMANIQKKKDEEKALRELRAKAQQKGAFGGAGLKKSGKK 108

[Close]

BLAST of Carg11954 vs. NCBI nr
Match: XP_022980452.1 (translation machinery-associated protein 7-like [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 32  QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
           +A+   + KVEKKDY+EVDMA IQK K+EEK LRE RAKAQQKG FG A LKKSGKK
Sbjct: 45  KAKPLKQPKVEKKDYDEVDMANIQKKKDEEKALRELRAKAQQKGAFGGAGLKKSGKK 101

[Close]

BLAST of Carg11954 vs. NCBI nr
Match: XP_022145738.1 (translation machinery-associated protein 7 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 32 QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          +A+   + KV+KK+Y+EVDMA IQK K+EEK LRE RAKAQQKGTFG A LKKSGKK
Sbjct: 42 KAKPLKQPKVDKKEYDEVDMANIQKKKDEEKALRELRAKAQQKGTFGGAGLKKSGKK 98

[Close]

BLAST of Carg11954 vs. NCBI nr
Match: KGN56723.1 (F9L1.21 protein [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-09
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 32  QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
           +A+   + KV+KKDY+EVDMA +QK K+EEK L+E RAKAQQKGTFG A LKKSGKK
Sbjct: 53  KAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

[Close]

BLAST of Carg11954 vs. TAIR10
Match: AT1G15270.1 (Translation machinery associated TMA7)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 32 QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          +A+   + K +KK+Y+E D+A IQK K+EEK L+E RAKA QKG+FG + LKKSGKK
Sbjct: 8  KAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64

[Close]

BLAST of Carg11954 vs. TAIR10
Match: AT3G16040.1 (Translation machinery associated TMA7)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-08
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 40 KVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          K  KK+Y+E DM  +QK K+EEK L+E RAKA QKG+FG + LKKSGKK
Sbjct: 16 KSGKKEYDEHDMELMQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64

[Close]

BLAST of Carg11954 vs. TrEMBL
Match: tr|A0A0A0L4M8|A0A0A0L4M8_CUCSA (F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 32  QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
           +A+   + KV+KKDY+EVDMA +QK K+EEK L+E RAKAQQKGTFG A LKKSGKK
Sbjct: 53  KAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

[Close]

BLAST of Carg11954 vs. TrEMBL
Match: tr|A0A2P5ELN0|A0A2P5ELN0_9ROSA (Translation machinery associated TMA OS=Trema orientalis OX=63057 GN=TorRG33x02_177400 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 32 QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          +A+   + KV+KK+Y+EVDMA IQK KEEEK L+E +AKAQQKG+FG A LKKSGKK
Sbjct: 8  KAKPLKQPKVDKKEYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGAGLKKSGKK 64

[Close]

BLAST of Carg11954 vs. TrEMBL
Match: tr|I1KV79|I1KV79_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G206000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 32 QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          +A+   K K +KKDY+EVDMA IQK KEEEK L+E +AKAQQKG+FG + LKKSGKK
Sbjct: 8  KAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKKSGKK 64

[Close]

BLAST of Carg11954 vs. TrEMBL
Match: tr|A0A151SH91|A0A151SH91_CAJCA (Acidic endochitinase OS=Cajanus cajan OX=3821 GN=KK1_000381 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 21  TTAVQHLSHVIQ----ARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGT 80
           TT +Q +  V Q    A+   K K +KKDY+E+DMA IQK KEEEK L+E +AKAQQKG+
Sbjct: 301 TTHLQRVYFVKQKGGKAKPLKKPKSDKKDYDEIDMANIQKKKEEEKALKELKAKAQQKGS 360

Query: 81  FGDARLKKSGKK 89
           FG + LKKSGKK
Sbjct: 361 FGGSGLKKSGKK 372

[Close]

BLAST of Carg11954 vs. TrEMBL
Match: tr|A0A2K3NN98|A0A2K3NN98_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000936 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 32 QARKESKLKVEKKDYNEVDMAKIQKMKEEEKTLREFRAKAQQKGTFGDARLKKSGKK 89
          +A+   K K +KKDY+EVDMA IQK K+EEK L+E +AKAQQKG+FG + LKKSGKK
Sbjct: 8  KAKPLKKPKSDKKDYDEVDMANIQKKKDEEKALKELKAKAQQKGSFGGSGLKKSGKK 64

The following BLAST results are available for this feature:

BLAST of Carg11954 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946455.1	3.4e-22	96.88	uncharacterized protein LOC111450508 [Cucurbita moschata]	[more]
XP_022924253.1	2.5e-09	71.93	translation machinery-associated protein 7-like [Cucurbita moschata]	[more]
XP_022980452.1	2.5e-09	71.93	translation machinery-associated protein 7-like [Cucurbita maxima]	[more]
XP_022145738.1	4.3e-09	70.18	translation machinery-associated protein 7 [Momordica charantia]	[more]
KGN56723.1	7.3e-09	68.42	F9L1.21 protein [Cucumis sativus]	[more]

BLAST of Carg11954 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15270.1	8.0e-10	57.89	Translation machinery associated TMA7	[more]
AT3G16040.1	4.4e-08	63.27	Translation machinery associated TMA7	[more]

BLAST of Carg11954 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11954 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4M8\|A0A0A0L4M8_CUCSA	4.8e-09	68.42	F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1	[more]
tr\|A0A2P5ELN0\|A0A2P5ELN0_9ROSA	1.8e-08	66.67	Translation machinery associated TMA OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]
tr\|I1KV79\|I1KV79_SOYBN	2.4e-08	66.67	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G206000 PE=4 SV=1	[more]
tr\|A0A151SH91\|A0A151SH91_CAJCA	2.4e-08	58.33	Acidic endochitinase OS=Cajanus cajan OX=3821 GN=KK1_000381 PE=4 SV=1	[more]
tr\|A0A2K3NN98\|A0A2K3NN98_TRIPR	5.3e-08	64.91	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000936 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015157	TMA7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11954-RA	Carg11954-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
IPR015157	Translation machinery associated TMA7	PFAM	PF09072	TMA7	coord: 40..88 e-value: 8.6E-10 score: 39.2
IPR015157	Translation machinery associated TMA7	PANTHER	PTHR28632	FAMILY NOT NAMED	coord: 40..88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11954	ClCG11G012700	Watermelon (Charleston Gray)	carwcgB0550
Carg11954	Cp4.1LG00g04470	Cucurbita pepo (Zucchini)	carcpeB0799

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11954	Cucurbita maxima (Rimu)	carcmaB0785
Carg11954	Cucurbita maxima (Rimu)	carcmaB0790
Carg11954	Cucurbita moschata (Rifu)	carcmoB0765
Carg11954	Cucurbita moschata (Rifu)	carcmoB0769
Carg11954	Cucurbita pepo (Zucchini)	carcpeB0800
Carg11954	Cucurbita pepo (Zucchini)	carcpeB0806
Carg11954	Wild cucumber (PI 183967)	carcpiB0596
Carg11954	Cucumber (Chinese Long) v2	carcuB0591
Carg11954	Cucumber (Chinese Long) v3	carcucB0598
Carg11954	Bottle gourd (USVL1VR-Ls)	carlsiB510
Carg11954	Melon (DHL92) v3.5.1	carmeB0569
Carg11954	Melon (DHL92) v3.6.1	carmedB0576
Carg11954	Watermelon (97103) v2	carwmbB0587
Carg11954	Wax gourd	carwgoB0671
Carg11954	Silver-seed gourd	carcarB523
Carg11954	Cucumber (Gy14) v2	carcgybB0566
Carg11954	Cucumber (Gy14) v1	carcgyB0639