Carg11948 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11948
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UDP-glucuronate 4-epimerase
Location	Cucurbita_argyrosperma_scaffold_037 : 26262 .. 26519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

mRNA sequence

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

Coding sequence (CDS)

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

Protein sequence

MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSALIISIPIMTLPLKKSPEIASLRSTESSSFTAIKRR

Homology

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_022946532.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_022999693.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_023547336.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_011010511.1 (PREDICTED: UDP-glucuronate 4-epimerase 1-like [Populus euphratica] >XP_011014870.1 PREDICTED: UDP-glucuronate 4-epimerase 1-like [Populus euphratica])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_002309376.1 (UDP-glucuronate 4-epimerase 1 [Populus trichocarpa] >PNT32262.1 hypothetical protein POPTR_006G178500v3 [Populus trichocarpa])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. TAIR10
Match: AT4G30440.1 (UDP-D-glucuronate 4-epimerase 1)

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-08
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SAQ HR  G+SVLVTGA GFVG+HVSLAL+     +  L
Sbjct: 73  EKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117

[Close]

BLAST of Carg11948 vs. TAIR10
Match: AT3G23820.1 (UDP-D-glucuronate 4-epimerase 6)

HSP 1 Score: 51.6 bits (122), Expect = 2.8e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EK++R S+   RP+GLSVLVTGAAGFVG+H SLAL+
Sbjct: 97  EKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALR 132

[Close]

BLAST of Carg11948 vs. TAIR10
Match: AT1G02000.1 (UDP-D-glucuronate 4-epimerase 2)

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+    NG+SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 77  EKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGL 121

[Close]

BLAST of Carg11948 vs. TAIR10
Match: AT4G12250.1 (UDP-D-glucuronate 4-epimerase 5)

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-06
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SA+     GL+VLVTGA+GFVGTHVS+AL+     +  L
Sbjct: 81  EKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL 125

[Close]

BLAST of Carg11948 vs. TAIR10
Match: AT2G45310.1 (UDP-D-glucuronate 4-epimerase 4)

HSP 1 Score: 47.4 bits (111), Expect = 5.2e-06
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 7   EKQLRHSA--QTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK+LR SA  +T   NG++VLVTGAAGFVGTHVS ALK     +  L
Sbjct: 80  EKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGL 126

[Close]

BLAST of Carg11948 vs. Swiss-Prot
Match: sp|Q9M0B6|GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-07
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SAQ HR  G+SVLVTGA GFVG+HVSLAL+     +  L
Sbjct: 73  EKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117

[Close]

BLAST of Carg11948 vs. Swiss-Prot
Match: sp|Q9LIS3|GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana OX=3702 GN=GAE6 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-06
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EK++R S+   RP+GLSVLVTGAAGFVG+H SLAL+
Sbjct: 97  EKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALR 132

[Close]

BLAST of Carg11948 vs. Swiss-Prot
Match: sp|Q9LPC1|GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+    NG+SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 77  EKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGL 121

[Close]

BLAST of Carg11948 vs. Swiss-Prot
Match: sp|Q9STI6|GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-05
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SA+     GL+VLVTGA+GFVGTHVS+AL+     +  L
Sbjct: 81  EKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL 125

[Close]

BLAST of Carg11948 vs. Swiss-Prot
Match: sp|O81312|GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.4e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+     G SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 76  EKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGL 120

[Close]

BLAST of Carg11948 vs. TrEMBL
Match: tr|B9HBG7|B9HBG7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G178500v3 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. TrEMBL
Match: tr|A0A1S4C9G8|A0A1S4C9G8_TOBAC (UDP-glucuronate 4-epimerase 1-like OS=Nicotiana tabacum OX=4097 GN=LOC107816401 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-07
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 2   GRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           G H  EKQ+R SAQ HR NG+SVLVTGAAGFVG+HVSLALK     +  L
Sbjct: 66  GGHHWEKQVRTSAQIHRSNGMSVLVTGAAGFVGSHVSLALKKRGDGVVGL 115

[Close]

BLAST of Carg11948 vs. TrEMBL
Match: tr|A0A1S4AYQ3|A0A1S4AYQ3_TOBAC (UDP-glucuronate 4-epimerase 1 OS=Nicotiana tabacum OX=4097 GN=LOC107802630 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-07
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 2   GRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           G H  EKQ+R SAQ HR NG+SVLVTGAAGFVG+HVSLALK     +  L
Sbjct: 66  GGHHWEKQVRTSAQIHRSNGMSVLVTGAAGFVGSHVSLALKKRGDGVVGL 115

[Close]

BLAST of Carg11948 vs. TrEMBL
Match: tr|A0A1U7YAK9|A0A1U7YAK9_NICSY (UDP-glucuronate 4-epimerase 1 OS=Nicotiana sylvestris OX=4096 GN=LOC104246106 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-07
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 2   GRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           G H  EKQ+R SAQ HR NG+SVLVTGAAGFVG+HVSLALK     +  L
Sbjct: 66  GGHHWEKQVRTSAQIHRSNGMSVLVTGAAGFVGSHVSLALKKRGDGVVGL 115

[Close]

BLAST of Carg11948 vs. TrEMBL
Match: tr|A0A059CNX7|A0A059CNX7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01241 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-07
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SAQ HRP+GLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 77  EKRVRDSAQVHRPDGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 121

The following BLAST results are available for this feature:

BLAST of Carg11948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946532.1	1.1e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita moschata]	[more]
XP_022999693.1	1.1e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita maxima]	[more]
XP_023547336.1	1.1e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_011010511.1	2.3e-07	86.11	PREDICTED: UDP-glucuronate 4-epimerase 1-like [Populus euphratica] >XP_011014870...	[more]
XP_002309376.1	2.3e-07	86.11	UDP-glucuronate 4-epimerase 1 [Populus trichocarpa] >PNT32262.1 hypothetical pro...	[more]

BLAST of Carg11948 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30440.1	4.3e-08	62.22	UDP-D-glucuronate 4-epimerase 1	[more]
AT3G23820.1	2.8e-07	69.44	UDP-D-glucuronate 4-epimerase 6	[more]
AT1G02000.1	6.2e-07	60.00	UDP-D-glucuronate 4-epimerase 2	[more]
AT4G12250.1	3.1e-06	55.56	UDP-D-glucuronate 4-epimerase 5	[more]
AT2G45310.1	5.2e-06	59.57	UDP-D-glucuronate 4-epimerase 4	[more]

BLAST of Carg11948 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0B6\|GAE1_ARATH	7.7e-07	62.22	UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1	[more]
sp\|Q9LIS3\|GAE6_ARATH	5.0e-06	69.44	UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana OX=3702 GN=GAE6 PE=1 SV=1	[more]
sp\|Q9LPC1\|GAE2_ARATH	1.1e-05	60.00	UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1	[more]
sp\|Q9STI6\|GAE5_ARATH	5.5e-05	55.56	UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1	[more]
sp\|O81312\|GAE3_ARATH	9.4e-05	57.78	UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1	[more]

BLAST of Carg11948 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9HBG7\|B9HBG7_POPTR	1.5e-07	86.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G178500v3 PE=...	[more]
tr\|A0A1S4C9G8\|A0A1S4C9G8_TOBAC	5.7e-07	66.00	UDP-glucuronate 4-epimerase 1-like OS=Nicotiana tabacum OX=4097 GN=LOC107816401 ...	[more]
tr\|A0A1S4AYQ3\|A0A1S4AYQ3_TOBAC	5.7e-07	66.00	UDP-glucuronate 4-epimerase 1 OS=Nicotiana tabacum OX=4097 GN=LOC107802630 PE=4 ...	[more]
tr\|A0A1U7YAK9\|A0A1U7YAK9_NICSY	5.7e-07	66.00	UDP-glucuronate 4-epimerase 1 OS=Nicotiana sylvestris OX=4096 GN=LOC104246106 PE...	[more]
tr\|A0A059CNX7\|A0A059CNX7_EUCGR	7.5e-07	71.11	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01241 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11948-RA	Carg11948-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43574	FAMILY NOT NAMED	coord: 6..46
None	No IPR available	PANTHER	PTHR43574:SF19	SUBFAMILY NOT NAMED	coord: 6..46
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 12..46

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11948	Cla97C11G218530	Watermelon (97103) v2	carwmbB0587
Carg11948	Bhi06G001192	Wax gourd	carwgoB0671

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None