Carg11881 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11881
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-type E3 ubiquitin transferase
Location	Cucurbita_argyrosperma_scaffold_036 : 620201 .. 622034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGGGGGTTTTGTTCAATTCTGGAGATGGGGACGGAGAATCCCGTCAATTTTGCTTACATGGGGCGGAGCTTTGATGATCTCACCAGCGGCGATAGTTCTGGGGCTTTTAGCGAGTGTAACAGCGATAGATCCGGGGAGTTCCCGATGGCGTCGTCCCAGAGTCGCCGCCTTTTGATTTCTTGTGCTTCTGATAACTCCGACGAGCTAATTCAGCAGCTGGTATTGGACCTCGAGTCTTGTTCGATTGACGAGCAGAAACAGGCGGCCATGGAGATCAGACTCCTCGCCAAGAACAAACCCGAGAATCGATTAAGGATCGCGAAAGCCGGTGCGGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATTTGTCGCTGAACGACGAGAACAAGGAGCTGATAGCAGCGTCTGGTGCGATTAAGCCTCTAGTTAGAGCTCTCATGTCCGGAACTTCGACGGCGAAGGAGAAACGCCGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCAGGATCGATTCCACTTCTGGTGAATCTATTGGGCAACGGTGGCTTTCGCGGAAAGAAGGATGCATCGACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCCGATTTCGGGTCAAACATGGTGGACAAGTCAGCGTTCGTGTTGAGCGTGTTGGTATCGATGTCGGAGGCAAGAACGGCTCTGGTAGACGAGGGCGGAATCCCAGTACTGGTGGAATTAGTGGAGGACGGAACGCAGCGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGAAAGTGTCCTTTACCGTACAATGGTAGCTCGTGAAGGAGCAATTCCACCGCTAGTCGCTTTGTCACAGTCTGGCACGAATCGCGCCAAGCAAAAGGTACGGATTCCCGGCCGAAACCGCCGTCTGTTATTCTCATGCCGGCCAATTGGCACAACTGACATGGCATTTCAATTTTCTTTTTCCTAATTTAAAAAAAGAAACAATGGGTTCTAAGCTAAAGAAAAAATAAATGGGATTTGGTTTTTGAGGTGGAAGAGAACGCTGTTCGGCCACGTCAGTCTGCTTCCTAGCTCTATTTTTCTATTTATAAAAAAAATATTAATTTTATTTTTTAAAAAGTAAATAAACAAAGACATTAAAAATGTGAGTGATTATTGGTTGGGTGCCTCCGTTTTAAACTCAAATTTATAGTGTCGTATCCAACTTTTAAAAACGTCAATTTTATTAGTGTTCATTCATATTCAATATTTTCATTATCCCATCACCCAGAGTTAGTGCAAAATGTTAATGCGTAGACTTGATTATATGAATATGAATGGGATTGAATTTGTGAATTGAAAGAATTGGTTATTTTTGTTGGTGAAATTGGGAACAGGCGGAGAAACTGATCGAGCTGCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAAATGTGTCTGTCTAATTTTTGTTCCGGCCACGTGGACGATGCAACCCCCCACACAACAAGACATCTCAATTACCCCCAACACACAAAAACCAAAAACCAAAAAAAGAAAGGGAAAGAGATGAGTGGAGAGAGGTTTTTGTTTGTAAATATATATATATATTTTCCAACCTTTTCTTTTCTTTAATGTTTGTGTTGTGATATATTGATCCGAGTTTTGAGCTACTTTCTTTTTTCTTAATAATTTGAAAGCTTTATTTTATAATA

mRNA sequence

GCAGGGGGTTTTGTTCAATTCTGGAGATGGGGACGGAGAATCCCGTCAATTTTGCTTACATGGGGCGGAGCTTTGATGATCTCACCAGCGGCGATAGTTCTGGGGCTTTTAGCGAGTGTAACAGCGATAGATCCGGGGAGTTCCCGATGGCGTCGTCCCAGAGTCGCCGCCTTTTGATTTCTTGTGCTTCTGATAACTCCGACGAGCTAATTCAGCAGCTGGTATTGGACCTCGAGTCTTGTTCGATTGACGAGCAGAAACAGGCGGCCATGGAGATCAGACTCCTCGCCAAGAACAAACCCGAGAATCGATTAAGGATCGCGAAAGCCGGTGCGGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCTTAGAGCTCTCATGTCCGGAACTTCGACGGCGAAGGAGAAACGCCGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCAGGATCGATTCCACTTCTGGTGAATCTATTGGGCAACGGTGGCTTTCGCGGAAAGAAGGATGCATCGACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCCGATTTCGGGTCAAACATGGTGGACAAGTCAGCGTTCGTGTTGAGCGTGTTGGTATCGATGTCGGAGGCAAGAACGGCTCTGGTAGACGAGGGCGGAATCCCAGTACTGGTGGAATTAGTGGAGGACGGAACGCAGCGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGAAAGTGTCCTTTACCGTACAATGGTAGCTCGTGAAGGAGCAATTCCACCGCTAGTCGCTTTGTCACAGTCTGGCACGAATCGCGCCAAGCAAAAGGCGGAGAAACTGATCGAGCTGCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAAATGTGTCTGTCTAATTTTTGTTCCGGCCACGTGGACGATGCAACCCCCCACACAACAAGACATCTCAATTACCCCCAACACACAAAAACCAAAAACCAAAAAAAGAAAGGGAAAGAGATGAGTGGAGAGAGGTTTTTGTTTGTAAATATATATATATATTTTCCAACCTTTTCTTTTCTTTAATGTTTGTGTTGTGATATATTGATCCGAGTTTTGAGCTACTTTCTTTTTTCTTAATAATTTGAAAGCTTTATTTTATAATA

Coding sequence (CDS)

ATGGGGACGGAGAATCCCGTCAATTTTGCTTACATGGGGCGGAGCTTTGATGATCTCACCAGCGGCGATAGTTCTGGGGCTTTTAGCGAGTGTAACAGCGATAGATCCGGGGAGTTCCCGATGGCGTCGTCCCAGAGTCGCCGCCTTTTGATTTCTTGTGCTTCTGATAACTCCGACGAGCTAATTCAGCAGCTGGTATTGGACCTCGAGTCTTGTTCGATTGACGAGCAGAAACAGGCGGCCATGGAGATCAGACTCCTCGCCAAGAACAAACCCGAGAATCGATTAAGGATCGCGAAAGCCGGTGCGGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCTTAGAGCTCTCATGTCCGGAACTTCGACGGCGAAGGAGAAACGCCGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCAGGATCGATTCCACTTCTGGTGAATCTATTGGGCAACGGTGGCTTTCGCGGAAAGAAGGATGCATCGACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCCGATTTCGGGTCAAACATGGTGGACAAGTCAGCGTTCGTGTTGAGCGTGTTGGTATCGATGTCGGAGGCAAGAACGGCTCTGGTAGACGAGGGCGGAATCCCAGTACTGGTGGAATTAGTGGAGGACGGAACGCAGCGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGAAAGTGTCCTTTACCGTACAATGGTAGCTCGTGAAGGAGCAATTCCACCGCTAGTCGCTTTGTCACAGTCTGGCACGAATCGCGCCAAGCAAAAGGCGGAGAAACTGATCGAGCTGCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAAATGTGTCTGTCTAA

Protein sequence

MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQEYGLELSCPELRRRRRNAACALLRLSQMEENKIAIGRSGSIPLLVNLLGNGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSMSEARTALVDEGGIPVLVELVEDGTQRQKEIAAVILLQICEESVLYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNYAATTSNVSV

Homology

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BLAST of Carg11881 vs. NCBI nr
Match: XP_022996974.1 (U-box domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-49
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTENPVNFAYMGRSFDDLT+GDSSGAFS+CNSDRSGEFPMASSQSRRLLISCASDNSDE
Sbjct: 1   MGTENPVNFAYMGRSFDDLTNGDSSGAFSDCNSDRSGEFPMASSQSRRLLISCASDNSDE 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 110
           LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS
Sbjct: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 109

[Close]

BLAST of Carg11881 vs. NCBI nr
Match: XP_022962415.1 (U-box domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 7.0e-49
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTENPVNF+YMGRSFDDLT+GDSSGAFS+CNSDRSGEFPMASSQSRRLLISCASDNSDE
Sbjct: 1   MGTENPVNFSYMGRSFDDLTNGDSSGAFSDCNSDRSGEFPMASSQSRRLLISCASDNSDE 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 110
           LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS
Sbjct: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 109

[Close]

BLAST of Carg11881 vs. NCBI nr
Match: XP_023547147.1 (U-box domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 9.2e-49
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTENPVNFAYMGRSFDDLT+GD+SGAFS+CNSDRSGEFPMASSQSRRLLISCASDNSDE
Sbjct: 1   MGTENPVNFAYMGRSFDDLTNGDTSGAFSDCNSDRSGEFPMASSQSRRLLISCASDNSDE 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 110
           LIQQLVLDLESCS+DEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS
Sbjct: 61  LIQQLVLDLESCSVDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLIS 109

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BLAST of Carg11881 vs. NCBI nr
Match: XP_021893509.1 (U-box domain-containing protein 4 [Carica papaya])

HSP 1 Score: 197.6 bits (501), Expect = 6.6e-47
Identity = 100/123 (81.30%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           M TENP N++YMGR F DL+  D S AFS+CNSDRSGEFP ASSQSRRLLI+CASDNSD+
Sbjct: 1   METENPANYSYMGRDFGDLSINDDSAAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDD 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQE 120
           LI+QLV DLESCSIDEQKQAAMEIRLLAKNKPENRL+IAKAGA++PLI+LIS TDPQLQE
Sbjct: 61  LIRQLVSDLESCSIDEQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLIALISSTDPQLQE 120

Query: 121 YGL 124
           YG+
Sbjct: 121 YGV 123

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BLAST of Carg11881 vs. NCBI nr
Match: XP_004142891.1 (PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] >KGN62451.1 hypothetical protein Csa_2G354770 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 99/111 (89.19%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTENP+NF YMGR+FDDL++GDSSGAFS+CNSDRSGEFP ASSQSRRLLI+CASDNSDE
Sbjct: 1   MGTENPMNFTYMGRTFDDLSNGDSSGAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDE 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLI 112
           LI+ LVLDLESCSI+EQKQAAMEIRLLAKNKPENRL+IAKAGAVRPLISLI
Sbjct: 61  LIRHLVLDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLI 111

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BLAST of Carg11881 vs. TAIR10
Match: AT3G01400.1 (ARM repeat superfamily protein)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-41
Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           M    P +F YMGR F DL+  D S AFS+CNSDRSGEFP ASS+SRRLL+SCAS+NSD+
Sbjct: 3   MENHRPGSFTYMGRKFSDLSLNDDSSAFSDCNSDRSGEFPTASSESRRLLLSCASENSDD 62

Query: 61  LIQQLVLDLESC-SIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQ 120
           LI  LV  L+S  SIDEQKQAAMEIRLL+KNKPENR++IAKAGA++PLISLIS +D QLQ
Sbjct: 63  LINHLVSHLDSSYSIDEQKQAAMEIRLLSKNKPENRIKIAKAGAIKPLISLISSSDLQLQ 122

Query: 121 EYGL 124
           EYG+
Sbjct: 123 EYGV 126

[Close]

BLAST of Carg11881 vs. TAIR10
Match: AT5G58680.1 (ARM repeat superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-32
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 5   NPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQS--RRLLISCASDNSDELI 64
           N  +F YM  SF D++    S AFS+CNSD S EFP  +S+S  R+L +SCA DNSD++I
Sbjct: 3   NHNSFTYMDHSFSDISLNFDSSAFSDCNSDISCEFPTTTSESRQRKLFLSCAVDNSDDVI 62

Query: 65  QQLVLDLE-SCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQEY 124
           + L+  LE S SI+EQKQAAMEIRLL+KNKPENR+++AKAGA++PL+SLIS +D QLQEY
Sbjct: 63  RNLITHLESSSSIEEQKQAAMEIRLLSKNKPENRIKLAKAGAIKPLVSLISSSDLQLQEY 122

[Close]

BLAST of Carg11881 vs. TAIR10
Match: AT4G16490.1 (ARM repeat superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-07
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 50  LISCASDNSDELIQQLVLD-LESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLI 109
           +I C S    +   +L +D L S S+  ++ AA ++RLLAKN+ +NR+ I ++GA++ LI
Sbjct: 172 IIECISPEDLQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALI 231

Query: 110 SLISCTDPQLQEYGL 124
            L+ C DP  QE+ +
Sbjct: 232 PLLRCNDPWTQEHAV 246

[Close]

BLAST of Carg11881 vs. TAIR10
Match: AT2G23140.1 (RING/U-box superfamily protein with ARM repeat domain)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 62  IQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQE 121
           +++LV +L+S S+D Q+QA  E+RLLAK+  +NR+ I  +GA+  L+ L+  TD   QE
Sbjct: 546 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQE 604

[Close]

BLAST of Carg11881 vs. TAIR10
Match: AT3G54850.1 (plant U-box 14)

HSP 1 Score: 50.1 bits (118), Expect = 3.1e-06
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 38  EFPMASSQSRRLLI--SCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENR 97
           E P      R   I  S +SD     +  L+  L + + ++Q+ AA E+RLLAK   +NR
Sbjct: 321 ELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNR 380

Query: 98  LRIAKAGAVRPLISLISCTDPQLQEYGL 124
           + IA+AGA+  L+ L+S  DP+ QE+ +
Sbjct: 381 VCIAEAGAIPLLVELLSSPDPRTQEHSV 408

[Close]

BLAST of Carg11881 vs. Swiss-Prot
Match: sp|E4NKF8|PUB1_MEDTR (U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-05
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 65  LVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQEYGLE 124
           LV  L + S D Q+Q+A EIRLLAK   +NR  IA+ GA+  L++L+   D ++QE+   
Sbjct: 408 LVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEH--- 467

Query: 125 LSCPELRRRRRNAACALLRLSQMEENKIAIGRSGSIPLLVNLL 168
                          AL  LS  + NKI I  +G+I  +V +L
Sbjct: 468 ------------VVTALFNLSIYDNNKILIMAAGAIDNIVEVL 495

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BLAST of Carg11881 vs. Swiss-Prot
Match: sp|A2ZLU6|SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-05
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 38  EFPMASSQSRRLLISCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLR 97
           E P  S+Q  +   +C+S      I  L+  L S   +EQ+ AA E+RLLAK    NR+ 
Sbjct: 346 EPPKRSTQPNKPTPACSSSERAN-IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRIC 405

Query: 98  IAKAGAVRPLISLISCTDPQLQEYGL 124
           IA+AGA+  L+SL+S +D + QE+ +
Sbjct: 406 IAEAGAIPLLLSLLSSSDLRTQEHAV 430

[Close]

BLAST of Carg11881 vs. Swiss-Prot
Match: sp|Q0IMG9|SL11_ORYSJ (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-05
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 38  EFPMASSQSRRLLISCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLR 97
           E P  S+Q  +   +C+S      I  L+  L S   +EQ+ AA E+RLLAK    NR+ 
Sbjct: 346 EPPKRSTQPNKPTPACSSSERAN-IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRIC 405

Query: 98  IAKAGAVRPLISLISCTDPQLQEYGL 124
           IA+AGA+  L+SL+S +D + QE+ +
Sbjct: 406 IAEAGAIPLLLSLLSSSDLRTQEHAV 430

[Close]

BLAST of Carg11881 vs. Swiss-Prot
Match: sp|O22193|PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3)

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-05
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 62  IQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQE 121
           +++LV +L+S S+D Q+QA  E+RLLAK+  +NR+ I  +GA+  L+ L+  TD   QE
Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQE 601

[Close]

BLAST of Carg11881 vs. Swiss-Prot
Match: sp|Q8VZ40|PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.6e-05
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 38  EFPMASSQSRRLLI--SCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENR 97
           E P      R   I  S +SD     +  L+  L + + ++Q+ AA E+RLLAK   +NR
Sbjct: 321 ELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNR 380

Query: 98  LRIAKAGAVRPLISLISCTDPQLQEYGL 124
           + IA+AGA+  L+ L+S  DP+ QE+ +
Sbjct: 381 VCIAEAGAIPLLVELLSSPDPRTQEHSV 408

[Close]

BLAST of Carg11881 vs. TrEMBL
Match: tr|A0A0A0LR48|A0A0A0LR48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354770 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 8.2e-46
Identity = 99/111 (89.19%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTENP+NF YMGR+FDDL++GDSSGAFS+CNSDRSGEFP ASSQSRRLLI+CASDNSDE
Sbjct: 1   MGTENPMNFTYMGRTFDDLSNGDSSGAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDE 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLI 112
           LI+ LVLDLESCSI+EQKQAAMEIRLLAKNKPENRL+IAKAGAVRPLISLI
Sbjct: 61  LIRHLVLDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLI 111

[Close]

BLAST of Carg11881 vs. TrEMBL
Match: tr|A0A2C9U0L6|A0A2C9U0L6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G046200 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 94/123 (76.42%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNSDE 60
           MGTEN  N+ YMGRSF + +  D S AFS+CNSDRSGEFP ASS+SRRLL++CAS+NSD+
Sbjct: 1   MGTENGANYTYMGRSFGNSSVNDDSSAFSDCNSDRSGEFPSASSESRRLLLACASENSDD 60

Query: 61  LIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQE 120
           LI+QLVLDLESCSIDEQKQAAMEIRLLAKN+PENRL+IAKAGA++PLI+LIS +D QLQE
Sbjct: 61  LIRQLVLDLESCSIDEQKQAAMEIRLLAKNRPENRLKIAKAGAIKPLITLISSSDYQLQE 120

Query: 121 YGL 124
           YG+
Sbjct: 121 YGV 123

[Close]

BLAST of Carg11881 vs. TrEMBL
Match: tr|A0A2P5F003|A0A2P5F003_9ROSA (Beta-catenin OS=Trema orientalis OX=63057 GN=TorRG33x02_131480 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.8e-43
Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLT--SGDSSGAFSECNSDRSGEFPMASSQSRRLLISCASDNS 60
           M  E P NF YMGR+F DL    GD S AFS+CNSDRSGEFP ASSQSRRLLI+CA+DNS
Sbjct: 1   MAMEKPTNFTYMGRTFSDLNVEGGDDSSAFSDCNSDRSGEFPTASSQSRRLLIACAADNS 60

Query: 61  DELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQL 120
           D+LI+QLV DL SCSI++QKQAAMEIRLLAKNK ENRL+IAKAGAVRPLISL+S +DPQL
Sbjct: 61  DDLIRQLVSDLHSCSIEDQKQAAMEIRLLAKNKAENRLKIAKAGAVRPLISLLSSSDPQL 120

Query: 121 QEYGL 124
           QEYG+
Sbjct: 121 QEYGV 125

[Close]

BLAST of Carg11881 vs. TrEMBL
Match: tr|A0A0B0MM41|A0A0B0MM41_GOSAR (U-box domain-containing 4-like protein OS=Gossypium arboreum OX=29729 GN=F383_19708 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.5e-43
Identity = 95/124 (76.61%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCA-SDNSD 60
           M TENPVN+ YMGRSF+DL+  D S AFS+CNSDRSGEFP ASSQ+RRL+++CA S+NSD
Sbjct: 1   METENPVNYKYMGRSFNDLSINDDSTAFSDCNSDRSGEFPSASSQNRRLVLACANSENSD 60

Query: 61  ELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQ 120
           ELI+QLV DL+SCSIDEQKQAA+E+RLLAKNKPENRL+IAKAGA+RPLISLIS +DP LQ
Sbjct: 61  ELIRQLVSDLDSCSIDEQKQAALELRLLAKNKPENRLKIAKAGAIRPLISLISSSDPYLQ 120

Query: 121 EYGL 124
           E G+
Sbjct: 121 ENGV 124

[Close]

BLAST of Carg11881 vs. TrEMBL
Match: tr|A0A2P5R698|A0A2P5R698_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20754 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.5e-43
Identity = 95/124 (76.61%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MGTENPVNFAYMGRSFDDLTSGDSSGAFSECNSDRSGEFPMASSQSRRLLISCA-SDNSD 60
           M TENPVN+ YMGRSF+DL+  D S AFS+CNSDRSGEFP ASSQ+RRL+++CA S+NSD
Sbjct: 1   METENPVNYKYMGRSFNDLSINDDSTAFSDCNSDRSGEFPSASSQNRRLVLACANSENSD 60

Query: 61  ELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQ 120
           ELI+QLV DL+SCSIDEQKQAA+E+RLLAKNKPENRL+IAKAGA+RPLISLIS +DP LQ
Sbjct: 61  ELIRQLVSDLDSCSIDEQKQAALELRLLAKNKPENRLKIAKAGAIRPLISLISSSDPYLQ 120

Query: 121 EYGL 124
           E G+
Sbjct: 121 ENGV 124

The following BLAST results are available for this feature:

BLAST of Carg11881 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996974.1	3.2e-49	98.17	U-box domain-containing protein 4-like [Cucurbita maxima]	[more]
XP_022962415.1	7.0e-49	97.25	U-box domain-containing protein 4-like [Cucurbita moschata]	[more]
XP_023547147.1	9.2e-49	96.33	U-box domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_021893509.1	6.6e-47	81.30	U-box domain-containing protein 4 [Carica papaya]	[more]
XP_004142891.1	1.2e-45	89.19	PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] >KGN62451.1 ...	[more]

BLAST of Carg11881 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01400.1	2.9e-41	70.97	ARM repeat superfamily protein	[more]
AT5G58680.1	2.5e-32	60.66	ARM repeat superfamily protein	[more]
AT4G16490.1	2.1e-07	38.67	ARM repeat superfamily protein	[more]
AT2G23140.1	1.8e-06	44.07	RING/U-box superfamily protein with ARM repeat domain	[more]
AT3G54850.1	3.1e-06	36.36	plant U-box 14	[more]

BLAST of Carg11881 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|E4NKF8\|PUB1_MEDTR	1.9e-05	36.89	U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV...	[more]
sp\|A2ZLU6\|SL11_ORYSI	1.9e-05	39.53	Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=...	[more]
sp\|Q0IMG9\|SL11_ORYSJ	1.9e-05	39.53	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SP...	[more]
sp\|O22193\|PUB4_ARATH	3.3e-05	44.07	U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 S...	[more]
sp\|Q8VZ40\|PUB14_ARATH	5.6e-05	36.36	U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1...	[more]

BLAST of Carg11881 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR48\|A0A0A0LR48_CUCSA	8.2e-46	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354770 PE=4 SV=1	[more]
tr\|A0A2C9U0L6\|A0A2C9U0L6_MANES	1.0e-43	76.42	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G046200 PE=4 SV=...	[more]
tr\|A0A2P5F003\|A0A2P5F003_9ROSA	3.8e-43	76.80	Beta-catenin OS=Trema orientalis OX=63057 GN=TorRG33x02_131480 PE=4 SV=1	[more]
tr\|A0A0B0MM41\|A0A0B0MM41_GOSAR	6.5e-43	76.61	U-box domain-containing 4-like protein OS=Gossypium arboreum OX=29729 GN=F383_19...	[more]
tr\|A0A2P5R698\|A0A2P5R698_GOSBA	6.5e-43	76.61	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20754 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR011989	ARM-like
IPR000225	Armadillo

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11881-RA	Carg11881-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 91..146 e-value: 24.0 score: 10.3 coord: 188..228 e-value: 20.0 score: 10.8 coord: 271..311 e-value: 500.0 score: 0.1 coord: 147..187 e-value: 0.92 score: 18.5 coord: 229..269 e-value: 3.8 score: 16.5
IPR000225	Armadillo	PFAM	PF00514	Arm	coord: 149..187 e-value: 9.7E-5 score: 22.2 coord: 92..120 e-value: 6.3E-5 score: 22.8
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 59..316 e-value: 2.9E-40 score: 139.8
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 134..320
None	No IPR available	PANTHER	PTHR23315:SF64	ARM REPEAT SUPERFAMILY PROTEIN-RELATED	coord: 16..122
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 16..122
None	No IPR available	PANTHER	PTHR23315:SF64	ARM REPEAT SUPERFAMILY PROTEIN-RELATED	coord: 134..320
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 59..307

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11881	Cla022624	Watermelon (97103) v1	carwmB0172
Carg11881	Csa2G354770	Cucumber (Chinese Long) v2	carcuB0202
Carg11881	MELO3C010809	Melon (DHL92) v3.5.1	carmeB0186
Carg11881	ClCG08G016440	Watermelon (Charleston Gray)	carwcgB0178
Carg11881	CSPI02G18570	Wild cucumber (PI 183967)	carcpiB0209
Carg11881	Cucsa.395660	Cucumber (Gy14) v1	carcgyB0225
Carg11881	CmaCh05G001410	Cucurbita maxima (Rimu)	carcmaB0256
Carg11881	CmaCh12G005970	Cucurbita maxima (Rimu)	carcmaB0249
Carg11881	CmoCh05G001430	Cucurbita moschata (Rifu)	carcmoB0263
Carg11881	CmoCh12G005370	Cucurbita moschata (Rifu)	carcmoB0257
Carg11881	Lsi08G015250	Bottle gourd (USVL1VR-Ls)	carlsiB164
Carg11881	Cp4.1LG11g01080	Cucurbita pepo (Zucchini)	carcpeB0263
Carg11881	Cp4.1LG07g04800	Cucurbita pepo (Zucchini)	carcpeB0268
Carg11881	CsGy2G018460	Cucumber (Gy14) v2	carcgybB0195
Carg11881	MELO3C010809.2	Melon (DHL92) v3.6.1	carmedB0190
Carg11881	CsaV3_2G026170	Cucumber (Chinese Long) v3	carcucB0209
Carg11881	Cla97C08G160150	Watermelon (97103) v2	carwmbB0190
Carg11881	Bhi04G000391	Wax gourd	carwgoB0231

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11881	Carg16394	Silver-seed gourd	carcarB220

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11881	Silver-seed gourd	carcarB216
Carg11881	Silver-seed gourd	carcarB217
Carg11881	Silver-seed gourd	carcarB224
Carg11881	Cucumber (Gy14) v2	carcgybB0197
Carg11881	Cucumber (Gy14) v2	carcgybB0199
Carg11881	Cucumber (Gy14) v1	carcgyB0221
Carg11881	Cucumber (Gy14) v1	carcgyB0224
Carg11881	Cucurbita maxima (Rimu)	carcmaB0247
Carg11881	Cucurbita maxima (Rimu)	carcmaB0248
Carg11881	Cucurbita maxima (Rimu)	carcmaB0251
Carg11881	Cucurbita maxima (Rimu)	carcmaB0253
Carg11881	Cucurbita moschata (Rifu)	carcmoB0255
Carg11881	Cucurbita moschata (Rifu)	carcmoB0256
Carg11881	Cucurbita moschata (Rifu)	carcmoB0258
Carg11881	Cucurbita moschata (Rifu)	carcmoB0259
Carg11881	Cucurbita pepo (Zucchini)	carcpeB0265
Carg11881	Cucurbita pepo (Zucchini)	carcpeB0266
Carg11881	Cucurbita pepo (Zucchini)	carcpeB0267
Carg11881	Wild cucumber (PI 183967)	carcpiB0211
Carg11881	Wild cucumber (PI 183967)	carcpiB0214
Carg11881	Cucumber (Chinese Long) v2	carcuB0204
Carg11881	Cucumber (Chinese Long) v2	carcuB0207
Carg11881	Cucumber (Chinese Long) v3	carcucB0211
Carg11881	Bottle gourd (USVL1VR-Ls)	carlsiB162
Carg11881	Melon (DHL92) v3.5.1	carmeB0185
Carg11881	Melon (DHL92) v3.5.1	carmeB0187
Carg11881	Melon (DHL92) v3.6.1	carmedB0189
Carg11881	Melon (DHL92) v3.6.1	carmedB0191
Carg11881	Watermelon (Charleston Gray)	carwcgB0175
Carg11881	Watermelon (97103) v1	carwmB0173
Carg11881	Watermelon (97103) v2	carwmbB0185
Carg11881	Watermelon (97103) v2	carwmbB0187
Carg11881	Wax gourd	carwgoB0233
Carg11881	Wax gourd	carwgoB0236