Carg11771 (gene) Silver-seed gourd

NameCarg11771
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionV-type proton ATPase subunit a
LocationCucurbita_argyrosperma_scaffold_036 : 35291 .. 36168 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTATCAACCAGTGTAAATCAACTCATTGTGGGCTATATTCCTCCGTGCGGGTGACTTATACCCTCCGTTTTTCAGAGATACTAATACCATTGGTTTAATAAAGGTTCGTGACGCGTATCCATTTGGTGTGGATCCGAAGTGGCAGGGCACTCGAAGTGAGTTACCTTTTCTCAAATCTTTGAAGATGACGATGTCTATCCTACTGGAGTAGCTCAAATGAACAGAGGAATTATATTGAGCTACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGGTTAGTTGCTTTAAGATGGATCCATTGTATCATCATTAAAATCATTTCTTTATTGAATTGTTAATTAATTGGCAGTCTTTCCGTAGAATTAATTGTTTGAAAATTTTCCTCCGGATGGCGGATTCTTGAATGAGATGTAATGTAGTCAATTATATGCAGTTGATGAATAAACTTTTAAAAAAAATATTGTTTTTATAAATTATTCAATTAGGCCTCTTCAAACCACATCCTAAAATTCTAGTGAAGATTCTGTTTTCTTTATTCTAACAAGTGTAAATTTTGTTTCATTGTTTCAGGTACCAATTTGTTCTACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATTGTAACGTGGTGCTCTGGATCTCAAGCTCTGTATCACGTAATGATCTATATAGGCGAAAACCAGCTTTTTCCAGGACAGTTCCTTCAGGTTCTTCATGCTTTGATGTGCTTCAAATTTCTTTTCATAATACTTGATTAGAATCAACTATTAATAACTATGTTTTTACACTTCCAGCATCCGTTAATTCTGTCTGCCCTCACTACCTTCTCTGTTGAAGAAACAACATGA

mRNA sequence

ATGCAGGTATCAACCAGTGTAAATCAACTCATTGTGGGCTATATTCCTCCGTGCGGAGATACTAATACCATTGGTTTAATAAAGGTTCGTGACGCGTATCCATTTGGTGTGGATCCGAAGTGGCAGGGCACTCGAAATGACGATGTCTATCCTACTGGAGTAGCTCAAATGAACAGAGGAATTATATTGAGCTACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGTCTTTCCGTAGAATTAATTGTACCAATTTGTTCTACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATTGTAACGTGGTGCTCTGGATCTCAAGCTCTGTATCACGTAATGATCTATATAGGCGAAAACCAGCTTTTTCCAGGACAGTTCCTTCAGGTTCTTCATGCTTTGATAATCAACTATTAATAACTATGTTTTTACACTTCCAGCATCCGTTAATTCTGTCTGCCCTCACTACCTTCTCTGTTGAAGAAACAACATGA

Coding sequence (CDS)

ATGCAGGTATCAACCAGTGTAAATCAACTCATTGTGGGCTATATTCCTCCGTGCGGAGATACTAATACCATTGGTTTAATAAAGGTTCGTGACGCGTATCCATTTGGTGTGGATCCGAAGTGGCAGGGCACTCGAAATGACGATGTCTATCCTACTGGAGTAGCTCAAATGAACAGAGGAATTATATTGAGCTACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGTCTTTCCGTAGAATTAATTGTACCAATTTGTTCTACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATTGTAACGTGGTGCTCTGGATCTCAAGCTCTGTATCACGTAATGATCTATATAGGCGAAAACCAGCTTTTTCCAGGACAGTTCCTTCAGGTTCTTCATGCTTTGATAATCAACTATTAATAACTATGTTTTTACACTTCCAGCATCCGTTAATTCTGTCTGCCCTCACTACCTTCTCTGTTGAAGAAACAACATGA

Protein sequence

MQVSTSVNQLIVGYIPPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPTGVAQMNRGIILSYFKAKFFGENINICLSVELIVPICSTDDFHEQFMRLPLTSHNCNVVLWISSSVSRNDLYRRKPAFSRTVPSGSSCFDNQLLITMFLHFQHPLILSALTTFSVEETT
BLAST of Carg11771 vs. NCBI nr
Match: XP_007158764.1 (hypothetical protein PHAVU_002G179900g [Phaseolus vulgaris] >ESW30758.1 hypothetical protein PHAVU_002G179900g [Phaseolus vulgaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P CGD +TIGLIKVRD YPFGVDPKW GTR++  Y            GV+QMN GII+SY
Sbjct: 503 PSCGDASTIGLIKVRDTYPFGVDPKWHGTRSELPYLNSLKMKMSILLGVSQMNLGIIMSY 562

Query: 76  FKAKFFGENINI 78
           + AK+F  NINI
Sbjct: 563 YNAKYFENNINI 574

BLAST of Carg11771 vs. NCBI nr
Match: PNX90772.1 (vacuolar proton ATPase a3-like protein, partial [Trifolium pratense])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P C D+ TIGLIKVRD YPFGVDPKW GTR++  +            GV+QMN GIILSY
Sbjct: 163 PSCRDSTTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSY 222

Query: 76  FKAKFFGENINI 78
           + AK+FG NINI
Sbjct: 223 YNAKYFGNNINI 234

BLAST of Carg11771 vs. NCBI nr
Match: KZM89605.1 (hypothetical protein DCAR_023032 [Daucus carota subsp. sativus])

HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P CGD+ T+GLIKVRD YPFGVDP W GTR++  Y            GVAQMN GIILS+
Sbjct: 436 PSCGDSTTMGLIKVRDTYPFGVDPAWHGTRSELPYLNSLKMKMSILLGVAQMNLGIILSF 495

Query: 76  FKAKFFGENINI 78
           F AKFFG  +NI
Sbjct: 496 FNAKFFGSAVNI 507

BLAST of Carg11771 vs. NCBI nr
Match: XP_017258199.1 (PREDICTED: LOW QUALITY PROTEIN: V-type proton ATPase subunit a3 [Daucus carota subsp. sativus])

HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P CGD+ T+GLIKVRD YPFGVDP W GTR++  Y            GVAQMN GIILS+
Sbjct: 491 PSCGDSTTMGLIKVRDTYPFGVDPAWHGTRSELPYLNSLKMKMSILLGVAQMNLGIILSF 550

Query: 76  FKAKFFGENINI 78
           F AKFFG  +NI
Sbjct: 551 FNAKFFGSAVNI 562

BLAST of Carg11771 vs. NCBI nr
Match: XP_004152666.1 (PREDICTED: V-type proton ATPase subunit a2 [Cucumis sativus] >KGN62648.1 hypothetical protein Csa_2G364570 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-15
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C D  +IGLIKVRD YPFGVDPKW GTR++  +            GVAQMN GIILSYF 
Sbjct: 497 CRDATSIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFN 556

BLAST of Carg11771 vs. TAIR10
Match: AT2G28520.1 (vacuolar proton ATPase A1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-15
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C D  T+GLIK RD YPFGVDP W+G+R +  Y            G+AQMN G+ILS+F 
Sbjct: 508 CSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPYLNSLKMKMSILLGIAQMNLGLILSFFN 567

BLAST of Carg11771 vs. TAIR10
Match: AT2G21410.1 (vacuolar proton ATPase A2)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C +  TIGLIK RD YPFGVDP W GTR++  +            GVAQMN GII+S+F 
Sbjct: 510 CSEATTIGLIKTRDTYPFGVDPVWHGTRSELPFLNSLKMKMSILIGVAQMNLGIIMSFFN 569

BLAST of Carg11771 vs. TAIR10
Match: AT4G39080.1 (vacuolar proton ATPase A3)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C +  TIGLIKVRD YPFG+DP W G+R++  +            GV+QMN GII+SYF 
Sbjct: 509 CSEATTIGLIKVRDTYPFGLDPVWHGSRSELPFLNSLKMKMSILLGVSQMNLGIIMSYFN 568

BLAST of Carg11771 vs. Swiss-Prot
Match: sp|Q8RWZ7|VHAA1_ARATH (V-type proton ATPase subunit a1 OS=Arabidopsis thaliana OX=3702 GN=VHA-a1 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.6e-14
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C D  T+GLIK RD YPFGVDP W+G+R +  Y            G+AQMN G+ILS+F 
Sbjct: 508 CSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPYLNSLKMKMSILLGIAQMNLGLILSFFN 567

BLAST of Carg11771 vs. Swiss-Prot
Match: sp|Q9SJT7|VHAA2_ARATH (V-type proton ATPase subunit a2 OS=Arabidopsis thaliana OX=3702 GN=VHA-a2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C +  TIGLIK RD YPFGVDP W GTR++  +            GVAQMN GII+S+F 
Sbjct: 510 CSEATTIGLIKTRDTYPFGVDPVWHGTRSELPFLNSLKMKMSILIGVAQMNLGIIMSFFN 569

BLAST of Carg11771 vs. Swiss-Prot
Match: sp|Q8W4S4|VHAA3_ARATH (V-type proton ATPase subunit a3 OS=Arabidopsis thaliana OX=3702 GN=VHA-a3 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C +  TIGLIKVRD YPFG+DP W G+R++  +            GV+QMN GII+SYF 
Sbjct: 509 CSEATTIGLIKVRDTYPFGLDPVWHGSRSELPFLNSLKMKMSILLGVSQMNLGIIMSYFN 568

BLAST of Carg11771 vs. TrEMBL
Match: tr|V7CN33|V7CN33_PHAVU (V-type proton ATPase subunit a OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G179900g PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P CGD +TIGLIKVRD YPFGVDPKW GTR++  Y            GV+QMN GII+SY
Sbjct: 503 PSCGDASTIGLIKVRDTYPFGVDPKWHGTRSELPYLNSLKMKMSILLGVSQMNLGIIMSY 562

Query: 76  FKAKFFGENINI 78
           + AK+F  NINI
Sbjct: 563 YNAKYFENNINI 574

BLAST of Carg11771 vs. TrEMBL
Match: tr|A0A2K3MJ11|A0A2K3MJ11_TRIPR (V-type proton ATPase subunit a (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g046898 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-15
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P C D+ TIGLIKVRD YPFGVDPKW GTR++  +            GV+QMN GIILSY
Sbjct: 163 PSCRDSTTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSY 222

Query: 76  FKAKFFGENINI 78
           + AK+FG NINI
Sbjct: 223 YNAKYFGNNINI 234

BLAST of Carg11771 vs. TrEMBL
Match: tr|A0A164UZN6|A0A164UZN6_DAUCA (V-type proton ATPase subunit a OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023032 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 16  PPCGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSY 75
           P CGD+ T+GLIKVRD YPFGVDP W GTR++  Y            GVAQMN GIILS+
Sbjct: 436 PSCGDSTTMGLIKVRDTYPFGVDPAWHGTRSELPYLNSLKMKMSILLGVAQMNLGIILSF 495

Query: 76  FKAKFFGENINI 78
           F AKFFG  +NI
Sbjct: 496 FNAKFFGSAVNI 507

BLAST of Carg11771 vs. TrEMBL
Match: tr|A0A0A0LLK1|A0A0A0LLK1_CUCSA (V-type proton ATPase subunit a OS=Cucumis sativus OX=3659 GN=Csa_2G364570 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.1e-15
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C D  +IGLIKVRD YPFGVDPKW GTR++  +            GVAQMN GIILSYF 
Sbjct: 497 CRDATSIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFN 556

BLAST of Carg11771 vs. TrEMBL
Match: tr|A0A1S3BD13|A0A1S3BD13_CUCME (V-type proton ATPase subunit a OS=Cucumis melo OX=3656 GN=LOC103488550 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 18  CGDTNTIGLIKVRDAYPFGVDPKWQGTRNDDVYPT----------GVAQMNRGIILSYFK 77
           C D  +IGL+KVRD YPFGVDPKW GTR++  +            GVAQMN GIILSYF 
Sbjct: 300 CRDATSIGLVKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFN 359

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_007158764.12.7e-1559.72hypothetical protein PHAVU_002G179900g [Phaseolus vulgaris] >ESW30758.1 hypothet... [more]
PNX90772.14.5e-1559.72vacuolar proton ATPase a3-like protein, partial [Trifolium pratense][more]
KZM89605.15.9e-1559.72hypothetical protein DCAR_023032 [Daucus carota subsp. sativus][more]
XP_017258199.15.9e-1559.72PREDICTED: LOW QUALITY PROTEIN: V-type proton ATPase subunit a3 [Daucus carota s... [more]
XP_004152666.17.7e-1562.86PREDICTED: V-type proton ATPase subunit a2 [Cucumis sativus] >KGN62648.1 hypothe... [more]
Match NameE-valueIdentityDescription
AT2G28520.14.2e-1550.00vacuolar proton ATPase A1[more]
AT2G21410.17.2e-1552.86vacuolar proton ATPase A2[more]
AT4G39080.11.2e-1450.00vacuolar proton ATPase A3[more]
Match NameE-valueIdentityDescription
sp|Q8RWZ7|VHAA1_ARATH7.6e-1450.00V-type proton ATPase subunit a1 OS=Arabidopsis thaliana OX=3702 GN=VHA-a1 PE=2 S... [more]
sp|Q9SJT7|VHAA2_ARATH1.3e-1352.86V-type proton ATPase subunit a2 OS=Arabidopsis thaliana OX=3702 GN=VHA-a2 PE=1 S... [more]
sp|Q8W4S4|VHAA3_ARATH2.2e-1350.00V-type proton ATPase subunit a3 OS=Arabidopsis thaliana OX=3702 GN=VHA-a3 PE=1 S... [more]
Match NameE-valueIdentityDescription
tr|V7CN33|V7CN33_PHAVU1.8e-1559.72V-type proton ATPase subunit a OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G179900... [more]
tr|A0A2K3MJ11|A0A2K3MJ11_TRIPR3.0e-1559.72V-type proton ATPase subunit a (Fragment) OS=Trifolium pratense OX=57577 GN=L195... [more]
tr|A0A164UZN6|A0A164UZN6_DAUCA3.9e-1559.72V-type proton ATPase subunit a OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_... [more]
tr|A0A0A0LLK1|A0A0A0LLK1_CUCSA5.1e-1562.86V-type proton ATPase subunit a OS=Cucumis sativus OX=3659 GN=Csa_2G364570 PE=3 S... [more]
tr|A0A1S3BD13|A0A1S3BD13_CUCME6.7e-1561.43V-type proton ATPase subunit a OS=Cucumis melo OX=3656 GN=LOC103488550 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0033179proton-transporting V-type ATPase, V0 domain
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR002490V-ATPase_116kDa_su
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11771-RACarg11771-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002490V-type ATPase, V0 complex, 116kDa subunit familyPANTHERPTHR11629VACUOLAR PROTON ATPASEScoord: 17..79
NoneNo IPR availablePANTHERPTHR11629:SF89SUBFAMILY NOT NAMEDcoord: 17..79

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11771CmaCh05G002790Cucurbita maxima (Rimu)carcmaB0256
Carg11771Cp4.1LG11g02360Cucurbita pepo (Zucchini)carcpeB0263
The following gene(s) are paralogous to this gene:

None