Carg11732 (gene) Silver-seed gourd

NameCarg11732
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsuccinate-semialdehyde dehydrogenase, mitochondrial
LocationCucurbita_argyrosperma_scaffold_035 : 1106103 .. 1106501 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTAAGAAGAAGAATCAACAGAGATAACGAAGATGACTATGACGGTCGCCGCAAGAGCAATCGCAACGGCTCGATCAGTGGTGCGAGCGAGCAGGCTCCGTAATGTGTTTACTGCGCTGAAATCTCAGTCTCACGCTCTTCTCATTCGTCAGGTAATCGCATTGCTCCTTCCTTTGTTCTTCATTGGCTATTTGAGTTTCTAGAATTGGAGCTTATGAAAATGTGCTTGAATGTCAGATGAGCTCGGAGGCGCAGAGTATGCGCTCCGAGGAGCAGAGCATGAGCTCGGAGGTGCAGAGCATCGCCGCTCGTCTTCGTAATTCTGGACTGTTACGAAGCCAAGGCCTCATTGGCGGCCAGTGGATTGATGCTTACGATGGGAGGACCATTAAGGTATGA

mRNA sequence

ACTAAGAAGAAGAATCAACAGAGATAACGAAGATGACTATGACGGTCGCCGCAAGAGCAATCGCAACGGCTCGATCAGTGGTGCGAGCGAGCAGGCTCCGTAATGTGTTTACTGCGCTGAAATCTCAGTCTCACGCTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGTATGCGCTCCGAGGAGCAGAGCATGAGCTCGGAGGTGCAGAGCATCGCCGCTCGTCTTCGTAATTCTGGACTGTTACGAAGCCAAGGCCTCATTGGCGGCCAGTGGATTGATGCTTACGATGGGAGGACCATTAAGGTATGA

Coding sequence (CDS)

ATGACTATGACGGTCGCCGCAAGAGCAATCGCAACGGCTCGATCAGTGGTGCGAGCGAGCAGGCTCCGTAATGTGTTTACTGCGCTGAAATCTCAGTCTCACGCTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGTATGCGCTCCGAGGAGCAGAGCATGAGCTCGGAGGTGCAGAGCATCGCCGCTCGTCTTCGTAATTCTGGACTGTTACGAAGCCAAGGCCTCATTGGCGGCCAGTGGATTGATGCTTACGATGGGAGGACCATTAAGGTATGA

Protein sequence

MTMTVAARAIATARSVVRASRLRNVFTALKSQSHALLIRQMSSEAQSMRSEEQSMSSEVQSIAARLRNSGLLRSQGLIGGQWIDAYDGRTIKV
BLAST of Carg11732 vs. NCBI nr
Match: XP_023534522.1 (succinate-semialdehyde dehydrogenase, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRLRNVFTALKSQSHALLIRQMSSEXXXXXXXXXXXXXXXX 60
          MTMTVAARAIATARSVVRASRLRNVFTA KSQSHALLIRQMSSE XXXXXXXXXXXXXXX
Sbjct: 1  MTMTVAARAIATARSVVRASRLRNVFTAQKSQSHALLIRQMSSEAXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
          XXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV
Sbjct: 61 XXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 93

BLAST of Carg11732 vs. NCBI nr
Match: XP_023007153.1 (succinate-semialdehyde dehydrogenase, mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 65/93 (69.89%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRLRNVFTALKSQSHALLIRQMSSEXXXXXXXXXXXXXXXX 60
          MTMTVA RAIATARS VRASRLRNVFTA KSQSHALLIRQMSSE                
Sbjct: 1  MTMTVATRAIATARSAVRASRLRNVFTAQKSQSHALLIRQMSSE-------AQSMRSEEQ 60

Query: 61 XXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                 +SGL RSQGLIGGQWIDAYDGRTIKV
Sbjct: 61 SIAARLRSSGLFRSQGLIGGQWIDAYDGRTIKV 86

BLAST of Carg11732 vs. NCBI nr
Match: XP_023007152.1 (succinate-semialdehyde dehydrogenase, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 65/93 (69.89%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRLRNVFTALKSQSHALLIRQMSSEXXXXXXXXXXXXXXXX 60
          MTMTVA RAIATARS VRASRLRNVFTA KSQSHALLIRQMSSE                
Sbjct: 1  MTMTVATRAIATARSAVRASRLRNVFTAQKSQSHALLIRQMSSE-------AQSMRSEEQ 60

Query: 61 XXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                 +SGL RSQGLIGGQWIDAYDGRTIKV
Sbjct: 61 SIAARLRSSGLFRSQGLIGGQWIDAYDGRTIKV 86

BLAST of Carg11732 vs. NCBI nr
Match: XP_022149643.1 (succinate-semialdehyde dehydrogenase, mitochondrial [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 54/99 (54.55%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRLR------NVFTALKSQSHALLIRQMSSEXXXXXXXXXX 60
          M M VAA A+AT RSVVR+S LR      +VF A KS+SH LLIRQMSSE          
Sbjct: 1  MRMAVAANALATDRSVVRSSWLRLLSPSSHVFAAQKSRSHTLLIRQMSSE---------- 60

Query: 61 XXXXXXXXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                       +SGLLRSQGLIGG+WIDAYDG+T KV
Sbjct: 61 ----AQSIAARLHSSGLLRSQGLIGGKWIDAYDGKTFKV 85

BLAST of Carg11732 vs. NCBI nr
Match: XP_022985852.1 (succinate-semialdehyde dehydrogenase, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 55/101 (54.46%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 1  MTMTVAARAIA--TARSVVRASR------LRNVFTALKSQSHALLIRQMSSEXXXXXXXX 60
          MTM VAARAIA  TARSVVR++R      L  VF   KS SH LLIRQMSSE        
Sbjct: 1  MTMMVAARAIATTTARSVVRSTRLPLQSPLLYVFAERKSHSHTLLIRQMSSE-------- 60

Query: 61 XXXXXXXXXXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                         +SGL RSQGLIGG+WIDAYDG+T KV
Sbjct: 61 ------APSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKV 87

BLAST of Carg11732 vs. TAIR10
Match: AT1G79440.1 (aldehyde dehydrogenase 5F1)

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 68 NSGLLRSQGLIGGQWIDAYDGRTIKV 94
          +SGLLR+QGLIGG+W+D+YD +TIKV
Sbjct: 47 SSGLLRTQGLIGGKWLDSYDNKTIKV 72

BLAST of Carg11732 vs. Swiss-Prot
Match: sp|B9F3B6|SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=ALDH5F1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-05
Identity = 19/25 (76.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 69 SGLLRSQGLIGGQWIDAYDGRTIKV 94
          +GLLR+QGLIGG+W+DAYDG+TI+V
Sbjct: 49 AGLLRTQGLIGGKWVDAYDGKTIEV 73

BLAST of Carg11732 vs. Swiss-Prot
Match: sp|Q9SAK4|SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-05
Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 68 NSGLLRSQGLIGGQWIDAYDGRTIKV 94
          +SGLLR+QGLIGG+W+D+YD +TIKV
Sbjct: 47 SSGLLRTQGLIGGKWLDSYDNKTIKV 72

BLAST of Carg11732 vs. TrEMBL
Match: tr|A0A1S3C2Z2|A0A1S3C2Z2_CUCME (succinate-semialdehyde dehydrogenase, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496279 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 51/99 (51.52%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRL------RNVFTALKSQSHALLIRQMSSEXXXXXXXXXX 60
          M MTV AR IA ARS+V +S+         VF A KS SH LLIRQMSSE          
Sbjct: 1  MIMTVTARVIAAARSLVPSSQFPLLRPSSYVFAAQKSHSHTLLIRQMSSE---------- 60

Query: 61 XXXXXXXXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                       +SGLLRSQGLIGG+WIDAYDG+TI+V
Sbjct: 61 ----AQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTIEV 85

BLAST of Carg11732 vs. TrEMBL
Match: tr|A0A0A0KGA1|A0A0A0KGA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G135470 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 49/99 (49.49%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 1  MTMTVAARAIATARSVVRASRL------RNVFTALKSQSHALLIRQMSSEXXXXXXXXXX 60
          M MTV AR I T RS+V +S++        V  A KS SH LLIRQMSSE          
Sbjct: 1  MIMTVTARVITTVRSLVPSSQVPLLRPSSYVLAAQKSHSHTLLIRQMSSE---------- 60

Query: 61 XXXXXXXXXXXXXNSGLLRSQGLIGGQWIDAYDGRTIKV 94
                       +SGLLRSQGLIGG+WIDAYDG+T+KV
Sbjct: 61 ----AQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTLKV 85

BLAST of Carg11732 vs. TrEMBL
Match: tr|A0A1S2XI86|A0A1S2XI86_CICAR (succinate-semialdehyde dehydrogenase, mitochondrial OS=Cicer arietinum OX=3827 GN=LOC101506901 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 68 NSGLLRSQGLIGGQWIDAYDGRTIKV 94
          NSGLLR+QGLIGGQW DAYDG+TIKV
Sbjct: 49 NSGLLRTQGLIGGQWRDAYDGKTIKV 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023534522.16.5e-2497.85succinate-semialdehyde dehydrogenase, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_023007153.11.1e-2069.89succinate-semialdehyde dehydrogenase, mitochondrial isoform X2 [Cucurbita maxima... [more]
XP_023007152.11.1e-2069.89succinate-semialdehyde dehydrogenase, mitochondrial isoform X1 [Cucurbita maxima... [more]
XP_022149643.11.2e-1254.55succinate-semialdehyde dehydrogenase, mitochondrial [Momordica charantia][more]
XP_022985852.11.7e-1154.46succinate-semialdehyde dehydrogenase, mitochondrial-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G79440.13.3e-0673.08aldehyde dehydrogenase 5F1[more]
Match NameE-valueIdentityDescription
sp|B9F3B6|SSDH_ORYSJ3.5e-0576.00Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japon... [more]
sp|Q9SAK4|SSDH_ARATH6.0e-0573.08Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C2Z2|A0A1S3C2Z2_CUCME4.2e-1151.52succinate-semialdehyde dehydrogenase, mitochondrial OS=Cucumis melo OX=3656 GN=L... [more]
tr|A0A0A0KGA1|A0A0A0KGA1_CUCSA2.1e-1049.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G135470 PE=3 SV=1[more]
tr|A0A1S2XI86|A0A1S2XI86_CICAR3.8e-0488.46succinate-semialdehyde dehydrogenase, mitochondrial OS=Cicer arietinum OX=3827 G... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009450 gamma-aminobutyric acid catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006570 tyrosine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11732-RACarg11732-RAmRNA