Carg11665 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11665
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_035 : 633068 .. 633559 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATAGATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGGTAACTTTACACAACGCCGTGTTCCATAATTTTTTCTCTTTAAATAATGATAACCTGCACTTTCTAATACTAACCATGTATTACGATGGATATTTTAGTGTGGAAGAATATACATTGAAGCACTGCTCAACTGTTCCAATTTTTCATTCCACTACTATACCACAGGGTATAATAGAATTTTTTCAGGGTGGTGATCTATTTTACTGCAGAAGGTAACATTTTCTTTACTGTAAAATAGTTTATGATTGGTCGATCGATATGATGATTCTATTTTGAATATACTTGCAGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

mRNA sequence

TTATAGATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

Coding sequence (CDS)

ATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

Protein sequence

MKNIVGILASREISTNTKKITESQRRLHSCAILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA

Homology

[Close]

BLAST of Carg11665 vs. NCBI nr
Match: XP_022947738.1 (uncharacterized protein LOC111451512 [Cucurbita moschata] >XP_022947739.1 uncharacterized protein LOC111451512 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 65/104 (62.50%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTKKI ESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKKILESQRRLHSCVEEYTLKHCSTVPIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA
Sbjct: 61  GDLFYCRSAILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 104

[Close]

BLAST of Carg11665 vs. NCBI nr
Match: XP_023534521.1 (uncharacterized protein LOC111796064 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 64/104 (61.54%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTKKITESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKKITESQRRLHSCVEEYTLKHCSTVTIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILED+PKVFEWITSCQLPVRSIIKFDESNW FVQA
Sbjct: 61  GDLFYCRSAILEDNPKVFEWITSCQLPVRSIIKFDESNWNFVQA 104

[Close]

BLAST of Carg11665 vs. NCBI nr
Match: XP_023007549.1 (uncharacterized protein LOC111500010 [Cucurbita maxima] >XP_023007550.1 uncharacterized protein LOC111500010 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTK ITESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKMITESQRRLHSCVEEYTLKHCSTVTIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILED+PKVFEWITSCQLPVRSII+FDESNW FVQA
Sbjct: 61  GDLCYCRSAILEDYPKVFEWITSCQLPVRSIIRFDESNWNFVQA 104

The following BLAST results are available for this feature:

BLAST of Carg11665 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947738.1	3.0e-23	62.50	uncharacterized protein LOC111451512 [Cucurbita moschata] >XP_022947739.1 unchar...	[more]
XP_023534521.1	1.5e-22	61.54	uncharacterized protein LOC111796064 [Cucurbita pepo subsp. pepo]	[more]
XP_023007549.1	1.3e-21	59.62	uncharacterized protein LOC111500010 [Cucurbita maxima] >XP_023007550.1 uncharac...	[more]

BLAST of Carg11665 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11665 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11665 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11665-RA	Carg11665-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11665	Wax gourd	carwgoB1247
Carg11665	Cucumber (Gy14) v2	carcgybB1038
Carg11665	Cucumber (Gy14) v2	carcgybB1039
Carg11665	Cucumber (Gy14) v2	carcgybB1040
Carg11665	Cucumber (Gy14) v1	carcgyB1174
Carg11665	Cucumber (Gy14) v1	carcgyB1175
Carg11665	Cucurbita maxima (Rimu)	carcmaB1462
Carg11665	Cucurbita maxima (Rimu)	carcmaB1466
Carg11665	Cucurbita maxima (Rimu)	carcmaB1467
Carg11665	Cucurbita moschata (Rifu)	carcmoB1424
Carg11665	Cucurbita moschata (Rifu)	carcmoB1417
Carg11665	Cucurbita moschata (Rifu)	carcmoB1422
Carg11665	Cucurbita pepo (Zucchini)	carcpeB1470
Carg11665	Cucurbita pepo (Zucchini)	carcpeB1471
Carg11665	Cucurbita pepo (Zucchini)	carcpeB1472
Carg11665	Cucurbita pepo (Zucchini)	carcpeB1474
Carg11665	Cucurbita pepo (Zucchini)	carcpeB1476
Carg11665	Wild cucumber (PI 183967)	carcpiB1092
Carg11665	Wild cucumber (PI 183967)	carcpiB1093
Carg11665	Wild cucumber (PI 183967)	carcpiB1095
Carg11665	Cucumber (Chinese Long) v2	carcuB1069
Carg11665	Cucumber (Chinese Long) v2	carcuB1070
Carg11665	Cucumber (Chinese Long) v2	carcuB1072
Carg11665	Cucumber (Chinese Long) v3	carcucB1102
Carg11665	Cucumber (Chinese Long) v3	carcucB1103
Carg11665	Cucumber (Chinese Long) v3	carcucB1104
Carg11665	Bottle gourd (USVL1VR-Ls)	carlsiB962
Carg11665	Bottle gourd (USVL1VR-Ls)	carlsiB965
Carg11665	Bottle gourd (USVL1VR-Ls)	carlsiB967
Carg11665	Melon (DHL92) v3.5.1	carmeB1023
Carg11665	Melon (DHL92) v3.5.1	carmeB1026
Carg11665	Melon (DHL92) v3.6.1	carmedB1037
Carg11665	Melon (DHL92) v3.6.1	carmedB1039
Carg11665	Watermelon (Charleston Gray)	carwcgB1028
Carg11665	Watermelon (97103) v1	carwmB1056
Carg11665	Watermelon (97103) v1	carwmB1059
Carg11665	Watermelon (97103) v2	carwmbB1115