Carg11509 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11509
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	Cucurbita_argyrosperma_scaffold_083 : 339803 .. 342690 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTCCTACAGAACCTTACATCCTTATGGCACACTCCATTTAAGAAAAACATGGAATGGAACTGAATCAGTTTGGGATTGGATGGAGCTCAGACTTGTTAGCTCTTTTGGCCAAGAAGCTGCCTGTGTGCGCTTGTTGGAACCTTCAGGAATGGATGTATTTTGGCAGGTTGCTTCAAGTTTACGCCTAACGTTCAATGTGTTTTCCTCTGTTCATTTAGGGTTTATGTTGAGAAAATTTTGAATGCTCCAAAGTTGGGTTAAGGTTATTATTTGAACTTCCCCTATTTTCAAATATCCAATTTAGTTCTTGTATGTTCAATAAATTTACAAATCACTCCTTTTTAATGTTTTCAAAACCGTCTCTTGCCCCGATTTTGAAACTTTATTAATTAACTTCAAACTAATAATAATAATCGTTGGATCCTAAGACCTATCGGGATGAATAAAATAAACATCCCAATTTAGAACTCTGGTGTCGGGGCCTGGGGCCTTGTCGTGTCGACTAGTTTAAAATGGTAGTTTAATTTTCAATGACACGTGTAATCAGTAGGTTAAACTTTGACGGTGGATAAATATTTTTTTAAAACTAAAAAAAAAAAAATTGTAAAAGTTAGAATATTTATTTATTATTTTTGTTTTTTATATAAACATTCAAAACTTTAGATTTTTAATATTAAAATTTTTTAAAGAAAGATAGTATTTTAAAAGTAATTTATTAATTTTGTTTAGTAATAAAAACATATTATTTAAAAAATGCAAATCAGGAAGGATAAAATAAGAATAAATTAAACAGAAAGCCCTAAACCCTTCTTCGCGCCGGTTCCTCCTCCTTTTGTCGCTCATCTTCTTCTTCTTCTTCTTCACGCCGGTTCCTCTTCCCTTTTAGCAGCTCAGTTTCACCGCCGTCGCCGCTGTCTTTCTTCCGTGCCGGCTCCTCCTCCTTTTTAGCAGCTCAGTGTCACTGCTGTCGCCGCCGACTTTCTTCCGTGCTTTCTGCTGCCGTGTCACTCCTAGCGGCTTGCACCGATTTCTCGTTGTTACTGGTATGGTCTCAATATCTATCTATGTCTTTTTCCTAACTAGAGAAACTTAAATTAGAACGTTTCGGATGAAAGAAACGAGCGATAGCTTGCATCAAACCTTGAACCTATCATCCTCTTTTGACTTTTGATTTGTATTAAATCAGATTGGTGTTTTATATAAATGAATTCTTACTCATTTAGAATTTGCATTATATATTCTTTGCATACCTATTTGGAGTATAGTTACTGAGTATTGAATTGTTTGACAATGAATTAGTCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTACAAATGCTAAAAGACCGAGGTTATTTTGTCGGGGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCTAAGAGAAATGATAGCTCTGATCAGGTATCGTCTCAAAAAAGTGAATATTTGATTAGTAGTTTTCATAGTTATTAAAGTTAAGTTACAGGAGATACGAGTTTCTCGTTAAATTCTCCTATTTGTTTACGTCCTCGTATCGTGACTCTTTTCTCTATAGATATACGTATTCTTCCCGGAAGAACAGAAGGTTGGTGTCAAGACAATGAAAACATATACGAACCGCATGAAAACGGAGAATGTTTTTAGAGCGATATTGGTTGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAGTGAAATATCTTCCAAATTCCACTTGGAAGTTTTCCAGGTGAAAATATCTTATGGAGTATTTTATGGCCAAGGCAGTTGTTTAATTGCTCTTATTTTTCTTAGTTCACCTAAAATATAAAATTTTTGTTCTTGTTCTTCTCTTTATTTGTGGATGCAGGAAGCGGAATTGCTTGTTAATGTCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTACCAATGAAGAGAAAAAAACACTACTGGAGAGATATACTGTGAAAGAAACACAGGTTAGCTTTAGTTCTTCAGAAAATATAACATTGTGAGAATGCATTTCGAGATCTATATTGAAACGTGATATGCTCACGCATTCTTGATACCACTTTGGTTCCCATGTCTGTAGCAAGAAACTAGGGATAAGGTGAATTCATCAATTGAACTCCTCCAATCTTATCTCAACGAGTGACTAACGACTCGATTTCTTCGTGGTTCTATCTTCAAATTGCCCAATCTTATTTAGTGGAATTTTGCCTCTTCTCGTGTTCCATTAGGGGTCACTAGCATGCTGCGACTTGCAACCCGTATTTTTGTAGCTTGTCGTGTGCATGTGCTCCATGTAGAGTTCCATTAGGGTCACTAGTATGCTGCGACTTGCAAACCGTATTTTTGTAGCTTGTCGTGTGCATGTGCTCCATGTAGTTTTCCTAGCAACGAAGAATTCTCGACAGTGGTTTATTTTTCGGTTTGGCCCTATTTACCACTTCTAGAGAACTATCTTTATGTTGTCTTTTTTGTTCTTTTTAGTAACCAAGGTATTGGGGCATTACTCCATGCGCGCATTGTGTACTAATCACAATGCGAACTATAGAGGCGTTTGTCGGGCCGTACCATATTGTCTACTATCTATTCGTTGGTGTTGATATGCGTTTGCATTTCTGTTGCAAAATGAATAAGAATCTTACATGATTTTCCATACTTTGTGTTAGCTACCACGCATACAGGTGACCGACCCAGTTGCAAGATATTACGGGCTGAAACGTGGACAAGTCGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTTACTTACAGATATGTTGTTTGA

mRNA sequence

ATGGAGTTTTCCTACAGAACCTTACATCCTTATGGCACACTCCATTTAAGAAAAACATGGAATGGAACTGAATCAGTTTGGGATTGGATGGAGCTCAGACTTGTTAGCTCTTTTGGCCAAGAAGCTGCCTGTGTGCGCTTGTTGGAACCTTCAGGAATGGATGTATTTTGGCAGCAGCTCAGTTTCACCGCCGTCGCCGCTGTCTTTCTTCCGTGCCGGCTCCTCCTCCTTTTTAGCAGCTCAGTGTCACTGCTGTCGCCGCCGACTTTCTTCCGTGCTTTCTGCTGCCGTGTCACTCCTAGCGGCTTGCACCGATTTCTCGTTGTTACTGTCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTACAAATGCTAAAAGACCGAGGTTATTTTGTCGGGGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCTAAGAGAAATGATAGCTCTGATCAGATATACGTATTCTTCCCGGAAGAACAGAAGGTTGGTGTCAAGACAATGAAAACATATACGAACCGCATGAAAACGGAGAATGTTTTTAGAGCGATATTGGTTGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAGTGAAATATCTTCCAAATTCCACTTGGAAGTTTTCCAGGAAGCGGAATTGCTTGTTAATGTCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTACCAATGAAGAGAAAAAAACACTACTGGAGAGATATACTGTGAAAGAAACACAGGTGACCGACCCAGTTGCAAGATATTACGGGCTGAAACGTGGACAAGTCGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTTACTTACAGATATGTTGTTTGA

Coding sequence (CDS)

ATGGAGTTTTCCTACAGAACCTTACATCCTTATGGCACACTCCATTTAAGAAAAACATGGAATGGAACTGAATCAGTTTGGGATTGGATGGAGCTCAGACTTGTTAGCTCTTTTGGCCAAGAAGCTGCCTGTGTGCGCTTGTTGGAACCTTCAGGAATGGATGTATTTTGGCAGCAGCTCAGTTTCACCGCCGTCGCCGCTGTCTTTCTTCCGTGCCGGCTCCTCCTCCTTTTTAGCAGCTCAGTGTCACTGCTGTCGCCGCCGACTTTCTTCCGTGCTTTCTGCTGCCGTGTCACTCCTAGCGGCTTGCACCGATTTCTCGTTGTTACTGTCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTACAAATGCTAAAAGACCGAGGTTATTTTGTCGGGGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCTAAGAGAAATGATAGCTCTGATCAGATATACGTATTCTTCCCGGAAGAACAGAAGGTTGGTGTCAAGACAATGAAAACATATACGAACCGCATGAAAACGGAGAATGTTTTTAGAGCGATATTGGTTGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAGTGAAATATCTTCCAAATTCCACTTGGAAGTTTTCCAGGAAGCGGAATTGCTTGTTAATGTCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTACCAATGAAGAGAAAAAAACACTACTGGAGAGATATACTGTGAAAGAAACACAGGTGACCGACCCAGTTGCAAGATATTACGGGCTGAAACGTGGACAAGTCGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTTACTTACAGATATGTTGTTTGA

Protein sequence

MEFSYRTLHPYGTLHLRKTWNGTESVWDWMELRLVSSFGQEAACVRLLEPSGMDVFWQQLSFTAVAAVFLPCRLLLLFSSSVSLLSPPTFFRAFCCRVTPSGLHRFLVVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of Carg11509 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 8.2e-103
Identity = 201/206 (97.57%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET     QVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

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BLAST of Carg11509 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 382.9 bits (982), Expect = 1.1e-102
Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET     QVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

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BLAST of Carg11509 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 376.7 bits (966), Expect = 7.7e-101
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKET     QVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Carg11509 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.3 bits (952), Expect = 3.2e-99
Identity = 191/206 (92.72%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKET     QVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Carg11509 vs. NCBI nr
Match: XP_022142704.1 (DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_022142705.1 DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 1.4e-97
Identity = 187/206 (90.78%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVL++EEITRLFRIRKTVLQMLKDRGYFVGDFEI MSREQF++KYGESMKRED+VINKAK
Sbjct: 1   MVLADEEITRLFRIRKTVLQMLKDRGYFVGDFEIGMSREQFRNKYGESMKREDLVINKAK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIY+FFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCI EISSK
Sbjct: 61  RNDSSDQIYIFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIGEISSK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAEL+VN+KDHVL+PEHQLLT EEKKTLLERYTVKET     QVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLTTEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Carg11509 vs. TAIR10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-88
Identity = 161/205 (78.54%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 116 VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKR 175
           +L+EEE+ RL+RI+KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 176 NDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSKF 235
           ND+SDQ+Y+FFP+E KVGVKTMK YTNRMK+ENVFRAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 236 HLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGL 295
           HLEVFQEAE+LVN+K+HVLVPEHQ+LT EEKKTLLERYTVKET     QVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 296 KRGQVVKIIRPSETAGRYVTYRYVV 316
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Carg11509 vs. TAIR10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-35
Identity = 83/206 (40.29%), Postives = 131/206 (63.59%), Query Frame = 0


Query: 119 EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESM---KREDIVINKAKR 178
           ++EITR+F++R+TVLQML+DRGY + + ++++ RE+F  ++ ++M    +E + ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 179 NDSSDQIYVFFPEEQKVGVKTM-KTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 238
            + +D+IYVF+PE  KVGV  + K    +M+ + V R I+VV   +T  AR  +SE++  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 239 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEK-----KTLLERYTVKETQVTDPVARYYG 298
             +EVF+EAEL+ N+ +H LV ++ +L ++ K                  VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKXXXXXXXXXXXXXXPRILVTDPLARYYG 184

Query: 299 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Carg11509 vs. TAIR10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-28
Identity = 78/212 (36.79%), Postives = 127/212 (59.91%), Query Frame = 0


Query: 109 VTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDI 168
           + V + +  S  E  + +  R+T ++ML+DRGY V D +I++S +QF+  YGE    + +
Sbjct: 8   IVVGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLL 67

Query: 169 VINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY-TNRMKTENVFRAILVVQQNLTPFARTC 228
            I+   R DSS +I V F     V V  M+    + +  EN+   ILV+Q ++T  A   
Sbjct: 68  RISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKA 127

Query: 229 ISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TD 288
           +   S  F +E+F+  +LLVNV  HVL P+HQ+L ++EK++LL++++++E Q+      D
Sbjct: 128 VELFS--FKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKD 187

Query: 289 PVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 315
           P+ RYYGL+ GQV+K+    E +  +VTYR V
Sbjct: 188 PIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Carg11509 vs. TAIR10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-27
Identity = 76/213 (35.68%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 108 VVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKRED 167
           V+ ++  + LS EE  R +  R+  LQML+DRGY V D +I++S   F+  YGE    + 
Sbjct: 11  VLCLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDR 70

Query: 168 IVINKAKRNDSSDQIYVFFPEEQKVGVKTMKT-YTNRMKTENVFRAILVVQQNLTPFART 227
           + I+   R+DS+ ++ + F     V V  +++   + +  E +   ILV+Q ++T  A  
Sbjct: 71  LRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALK 130

Query: 228 CISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----T 287
            I   S  F +E+FQ  +LLVN+  H L P+HQ+L +EEK TLL++++++E Q+      
Sbjct: 131 AIELFS--FKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKK 190

Query: 288 DPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 315
           D + RYYGL++GQVVK+    E    +V +R V
Sbjct: 191 DAIVRYYGLEKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Carg11509 vs. TAIR10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-22
Identity = 64/201 (31.84%), Postives = 110/201 (54.73%), Query Frame = 0


Query: 121 EITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSD 180
           E  R +  R T  +ML+DRGY V + E+ ++  +F+  +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 181 QIYVFFPEEQKVGVKTMKTYTNRMKTE-NVFRAILVVQQNLTPFARTCISEISSKFHLEV 240
           +I V F   + + VK+++    ++     +   ILV+Q  +  FA+  ++  +  F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALT--TFPFTVET 154

Query: 241 FQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQ 300
           F   +LLVN+  H+  P+ ++L  EEK+ LL ++ +++ Q+      D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 301 VVKIIRPSETAGRYVTYRYVV 316
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233

[Close]

BLAST of Carg11509 vs. Swiss-Prot
Match: sp|O81098|RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.5e-87
Identity = 161/205 (78.54%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 116 VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKR 175
           +L+EEE+ RL+RI+KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 176 NDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSKF 235
           ND+SDQ+Y+FFP+E KVGVKTMK YTNRMK+ENVFRAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 236 HLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGL 295
           HLEVFQEAE+LVN+K+HVLVPEHQ+LT EEKKTLLERYTVKET     QVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 296 KRGQVVKIIRPSETAGRYVTYRYVV 316
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Carg11509 vs. Swiss-Prot
Match: sp|Q80UW8|RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.9e-52
Identity = 105/206 (50.97%), Postives = 149/206 (72.33%), Query Frame = 0


Query: 119 EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKA 178
           EEE  RL++IRKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 179 KRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISS 238
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 239 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYY 298
           K+ LE F + ELL+N+ +H LVPEH ++T EE   LL RY ++E+Q+      DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 299 GLKRGQVVKIIRPSETAGRYVTYRYV 315
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Carg11509 vs. Swiss-Prot
Match: sp|B0BNE2|RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.9e-52
Identity = 105/206 (50.97%), Postives = 149/206 (72.33%), Query Frame = 0


Query: 119 EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKA 178
           EEE  RL++IRKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 179 KRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISS 238
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 239 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYY 298
           K+ LE F + ELL+N+ +H LVPEH ++T EE   LL RY ++E+Q+      DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 299 GLKRGQVVKIIRPSETAGRYVTYRYV 315
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Carg11509 vs. Swiss-Prot
Match: sp|Q9N5K2|RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-51
Identity = 111/211 (52.61%), Postives = 148/211 (70.14%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGE-----SMKREDIV 174
           M   E E  RL+RIRKTVLQM+ DRGY V   E+D   E FK +YG+        R D+ 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 175 INKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCIS 234
           I  A  +D +DQ++VFFPE+ K+G+KT+K    +M+ +N+ RAI+VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 235 EISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPV 294
           +++ K+ LE F EAEL+VN+ +H LVPEH ++T EEK  LL RY +K++Q+      DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180

Query: 295 ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 316
           ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Carg11509 vs. Swiss-Prot
Match: sp|Q5R587|RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-51
Identity = 104/206 (50.49%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 119 EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKA 178
           EEE  RL++IRKT++Q+  DRGY V   E+D + E+F+ ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 179 KRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISS 238
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 239 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYY 298
           K+ LE F + ELL+N+ +H LVPEH ++T EE   LL RY ++E Q+      DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 299 GLKRGQVVKIIRPSETAGRYVTYRYV 315
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Carg11509 vs. TrEMBL
Match: tr|A0A2I4E6J8|A0A2I4E6J8_9ROSI (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Juglans regia OX=51240 GN=LOC108986744 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.3e-95
Identity = 182/206 (88.35%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           M+LSEEEITRLFRIR+TV+QMLKDRGYFVGDFEIDM++EQFK KYGESMKRED+VINKAK
Sbjct: 1   MMLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKDKYGESMKREDLVINKAK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIY+FFP+E KVGVKTMKTY+ RMK+ENVFRAILVVQQNLTPFAR+ ISEIS+K
Sbjct: 61  RNDSSDQIYIFFPDEPKVGVKTMKTYSQRMKSENVFRAILVVQQNLTPFARSSISEISTK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELL+N+KDHVLVPEHQ+LTNEEKKTLLERYTVKET     QVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLINIKDHVLVPEHQVLTNEEKKTLLERYTVKETQLPRMQVTDPVARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Carg11509 vs. TrEMBL
Match: tr|A0A2P5CMP5|A0A2P5CMP5_PARAD (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus OS=Parasponia andersonii OX=3476 GN=PanWU01x14_139760 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.1e-94
Identity = 178/206 (86.41%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSE+EITRLFRIRKTV+QMLKDR Y VGDFEI+M++EQF++KYGE+MKRED++I+KA+
Sbjct: 1   MVLSEDEITRLFRIRKTVMQMLKDRNYLVGDFEINMTKEQFRNKYGENMKREDLIISKAR 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEEQKVGVKTMK+YTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKSYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELL+N+K+HVLVPEHQ+LTNEEKKTLLERYTVKET     QVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLINIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of Carg11509 vs. TrEMBL
Match: tr|A0A2P5FSW4|A0A2P5FSW4_9ROSA (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus OS=Trema orientalis OX=63057 GN=TorRG33x02_035170 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.5e-94
Identity = 178/206 (86.41%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSE+EITRLFRIRKTV+QMLKDR Y VGDFEI+M++EQF++KYGE+MKRED++I+KA+
Sbjct: 1   MVLSEDEITRLFRIRKTVMQMLKDRNYLVGDFEINMTKEQFRNKYGENMKREDLIISKAR 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEEQKVGVKTMK+YTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKSYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYG 294
           FHLEVFQEAELL+N+K+HVLVPEHQ+LTNEEKKTLLERYTVKET     QVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLLNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 295 LKRGQVVKIIRPSETAGRYVTYRYVV 316
           LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of Carg11509 vs. TrEMBL
Match: tr|A0A1S3BS23|A0A1S3BS23_CUCME (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC103492579 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 7.8e-94
Identity = 184/207 (88.89%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLSEEEITRLFRIRKTV QML+DRGYFVGDFEIDM+REQFK KYGE+MKREDIVINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RNDSSDQIYVFFPEE KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C+SE +SK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 235 -FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYY 294
            FHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKET     QVTDPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 295 GLKRGQVVKIIRPSETAGRYVTYRYVV 316
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Carg11509 vs. TrEMBL
Match: tr|A0A0D2PJI1|A0A0D2PJI1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G280900 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 176/201 (87.56%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 115 MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 174
           MVLS++EI RLFRIRKTV+QMLKDRGYFVGDFEI++S++QF  KYGE+MKRED+VINK K
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK 60

Query: 175 RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 234
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCI+EISSK
Sbjct: 61  RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 235 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVTDPVARYYGLKRGQ 294
           FHLEVFQEAELLVNVK+H LVPEHQ+LTNEEKKTLL RYTVKETQV+DP+ARY+GLKRGQ
Sbjct: 121 FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQVSDPIARYFGLKRGQ 180

Query: 295 VVKIIRPSETAGRYVTYRYVV 316
           VVKIIRPSETAGRY+TYRYVV
Sbjct: 181 VVKIIRPSETAGRYITYRYVV 201

The following BLAST results are available for this feature:

BLAST of Carg11509 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991826.1	8.2e-103	97.57	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022953770.1	1.1e-102	97.09	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]
XP_022143609.1	7.7e-101	95.15	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]
XP_022959553.1	3.2e-99	92.72	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022142704.1	1.4e-97	90.78	DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_0221...	[more]

BLAST of Carg11509 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22320.1	1.4e-88	78.54	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	2.3e-35	40.29	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	2.1e-28	36.79	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	6.8e-27	35.68	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	5.1e-22	31.84	RNA polymerase II fifth largest subunit, E	[more]

BLAST of Carg11509 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81098\|RPB5A_ARATH	2.5e-87	78.54	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q80UW8\|RPAB1_MOUSE	5.9e-52	50.97	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
sp\|B0BNE2\|RPAB1_RAT	5.9e-52	50.97	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
sp\|Q9N5K2\|RPAB1_CAEEL	1.3e-51	52.61	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]
sp\|Q5R587\|RPAB1_PONAB	1.7e-51	50.49	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]

BLAST of Carg11509 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4E6J8\|A0A2I4E6J8_9ROSI	9.3e-95	88.35	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Juglans regia OX=51240...	[more]
tr\|A0A2P5CMP5\|A0A2P5CMP5_PARAD	2.1e-94	86.41	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus OS=Parasponia anderson...	[more]
tr\|A0A2P5FSW4\|A0A2P5FSW4_9ROSA	3.5e-94	86.41	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus OS=Trema orientalis OX...	[more]
tr\|A0A1S3BS23\|A0A1S3BS23_CUCME	7.8e-94	88.89	DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0D2PJI1\|A0A0D2PJI1_GOSRA	1.0e-93	87.56	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G280900 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR020608	RNA_pol_subH/Rpb5_CS
IPR000783	RNA_pol_subH/Rpb5_C
IPR036710	RNA_pol_Rpb5_N_sf
IPR005571	RNA_pol_Rpb5_N
IPR035913	RPB5-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11509-RA	Carg11509-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035913	RPB5-like RNA polymerase subunit	GENE3D	G3DSA:3.90.940.20		coord: 248..315 e-value: 1.0E-27 score: 97.7
IPR035913	RPB5-like RNA polymerase subunit	SUPERFAMILY	SSF55287	RPB5-like RNA polymerase subunit	coord: 245..315
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 119..204 e-value: 1.1E-33 score: 115.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	G3DSA:3.40.1340.10		coord: 116..247 e-value: 5.5E-48 score: 164.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 119..248
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 247..314 e-value: 2.2E-27 score: 94.6
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 254..314 e-value: 6.0E-18 score: 224.0
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 121..315
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 252..265

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11509	Cla014847	Watermelon (97103) v1	carwmB0014
Carg11509	Csa7G374590	Cucumber (Chinese Long) v2	carcuB0013
Carg11509	MELO3C015712	Melon (DHL92) v3.5.1	carmeB0012
Carg11509	ClCG09G007940	Watermelon (Charleston Gray)	carwcgB0012
Carg11509	CSPI07G15380	Wild cucumber (PI 183967)	carcpiB0013
Carg11509	Cucsa.388310	Cucumber (Gy14) v1	carcgyB0013
Carg11509	CmaCh08G002800	Cucurbita maxima (Rimu)	carcmaB0021
Carg11509	CmaCh17G013310	Cucurbita maxima (Rimu)	carcmaB0020
Carg11509	CmoCh08G002780	Cucurbita moschata (Rifu)	carcmoB0022
Carg11509	CmoCh17G012980	Cucurbita moschata (Rifu)	carcmoB0021
Carg11509	Lsi02G021910	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11509	Cp4.1LG12g10430	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11509	Cp4.1LG17g05950	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11509	CsGy7G013850	Cucumber (Gy14) v2	carcgybB0012
Carg11509	MELO3C015712.2	Melon (DHL92) v3.6.1	carmedB0013
Carg11509	CsaV3_7G027130	Cucumber (Chinese Long) v3	carcucB0013
Carg11509	Cla97C09G170550	Watermelon (97103) v2	carwmbB0012
Carg11509	Bhi09G000988	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11509	Carg05106	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:

None