Carg11457 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11457
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein At5g51380-like
Location	Cucurbita_argyrosperma_scaffold_083 : 35174 .. 35544 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATGCACATGGACGAGCACAATCGGTGTTGTTTGAAGCTGAAAGACGAAGCTCCATTTCCTCGGTTCCGAGCCCTCAAACGAACCCTAACTCGCCGGGGAAGAAGAGGACACTGCGTTGGTCTGATGTGTGTGGCAGAAGGACACCGAATCGCTTGAGAGTGTTATTGTTGCTATGCAACTTCAATCCTCGGGTAAAGACTCTCATATTCCCACACCCAACTTCAAAACCAACCCCCTCTTAATCGCTAATTTCTGCAAAATCGATTGTACGCTGCTTCTCTCGGATGAGCTTCTTCTTAGGATCCACACGAAATTACCGGATTCTCAGCGGAACTCAACTTTCTTGTCTGCAAACGGTGGCTGA

mRNA sequence

ATGGGTTATGCACATGGACGAGCACAATCGGTGTTGTTTGAAGCTGAAAGACGAAGCTCCATTTCCTCGAAGGACACCGAATCGCTTGAGAGTGTTATTGTTGCTATGCAACTTCAATCCTCGGGTAAAGACTCTCATATTCCCACACCCAACTTCAAAACCAACCCCCTCTTAATCGCTAATTTCTGCAAAATCGATTGTACGCTGCTTCTCTCGGATGAGCTTCTTCTTAGGATCCACACGAAATTACCGGATTCTCAGCGGAACTCAACTTTCTTGTCTGCAAACGGTGGCTGA

Coding sequence (CDS)

ATGGGTTATGCACATGGACGAGCACAATCGGTGTTGTTTGAAGCTGAAAGACGAAGCTCCATTTCCTCGAAGGACACCGAATCGCTTGAGAGTGTTATTGTTGCTATGCAACTTCAATCCTCGGGTAAAGACTCTCATATTCCCACACCCAACTTCAAAACCAACCCCCTCTTAATCGCTAATTTCTGCAAAATCGATTGTACGCTGCTTCTCTCGGATGAGCTTCTTCTTAGGATCCACACGAAATTACCGGATTCTCAGCGGAACTCAACTTTCTTGTCTGCAAACGGTGGCTGA

Protein sequence

MGYAHGRAQSVLFEAERRSSISSKDTESLESVIVAMQLQSSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFLSANGG

Homology

[Close]

BLAST of Carg11457 vs. NCBI nr
Match: XP_022942171.1 (F-box protein At5g51370-like [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-29
Identity = 80/114 (70.18%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 4   AHGRAQSVLFEAERRSSISS------------------------KDTESLESVIVAMQLQ 63
           AHGRAQSVLFEAERRSSISS                        KDT+SLE+VIVAMQLQ
Sbjct: 3   AHGRAQSVLFEAERRSSISSVPSPQTNPNLPGKKRTPRWSDVWLKDTKSLENVIVAMQLQ 62

Query: 64  SSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           SS KDS IPTPN K NP+LIANFCKID TLLLSDELLLRI TKLPDSQRNS FL
Sbjct: 63  SSCKDSQIPTPNSKINPILIANFCKIDRTLLLSDELLLRILTKLPDSQRNSNFL 116

[Close]

BLAST of Carg11457 vs. NCBI nr
Match: XP_023528939.1 (F-box protein At5g51370-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 78/114 (68.42%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 4   AHGRAQSVLFEAERRSSISS------------------------KDTESLESVIVAMQLQ 63
           AHGRAQSVLFEAERRSSISS                        KDT+SLE+VIVAMQLQ
Sbjct: 3   AHGRAQSVLFEAERRSSISSVPSPQTNPNLPGKKRTPRWSDVWLKDTKSLENVIVAMQLQ 62

Query: 64  SSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           SS KDS IPTPN K NP++IANFCKID TLLLSDELLL+I TKLPDSQRNS FL
Sbjct: 63  SSCKDSQIPTPNSKINPVVIANFCKIDRTLLLSDELLLKILTKLPDSQRNSNFL 116

[Close]

BLAST of Carg11457 vs. NCBI nr
Match: XP_022968261.1 (F-box protein At5g51380-like [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-26
Identity = 78/114 (68.42%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 4   AHGRAQSVLFEAERRSSISS------------------------KDTESLESVIVAMQLQ 63
           AHGRAQSVLFEAERRS ISS                        KDT+SLE+VIVAMQLQ
Sbjct: 3   AHGRAQSVLFEAERRSFISSVPSPQTNPNSPGKKRTPRWSDVWLKDTKSLENVIVAMQLQ 62

Query: 64  SSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           SS KDS IPT N KTNPLLIANF  ID TLLLSDELLLRI TKLPDSQRNS FL
Sbjct: 63  SSCKDSQIPTLNSKTNPLLIANFSNIDRTLLLSDELLLRILTKLPDSQRNSNFL 116

[Close]

BLAST of Carg11457 vs. NCBI nr
Match: XP_022985477.1 (F-box protein At5g51380-like [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-24
Identity = 73/118 (61.86%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 1   MGYAHGRAQSVLFEAERRSSISS-------------------------KDTESLESVIVA 60
           MG+ H RAQSVL E+ERRSSISS                         K+T+SLE VIVA
Sbjct: 1   MGFHHQRAQSVLLESERRSSISSVPSSQTNPNSPVKKKRNPRWSDVWLKNTKSLEHVIVA 60

Query: 61  MQLQSSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           MQLQS  K+ HIPTPN KT P LIANFCKID TLLLSDE+LLRI +KLPDSQRNS FL
Sbjct: 61  MQLQSLSKNPHIPTPNSKTKP-LIANFCKIDRTLLLSDEILLRILSKLPDSQRNSNFL 117

[Close]

BLAST of Carg11457 vs. NCBI nr
Match: XP_022922488.1 (F-box protein At5g51380-like [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.9e-24
Identity = 72/118 (61.02%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 1   MGYAHGRAQSVLFEAERRSSISS-------------------------KDTESLESVIVA 60
           MG+ H RAQSVL E+ERR+SISS                         K+T+SLE VIVA
Sbjct: 1   MGFHHQRAQSVLLESERRTSISSVPSSQTNPNSPVKKKRNPRWSDVWLKNTKSLEHVIVA 60

Query: 61  MQLQSSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           MQLQS  K+ HIPTPN KT P LIANFCKID TLLLSDE+LLRI +KLPDSQRNS FL
Sbjct: 61  MQLQSLSKNPHIPTPNSKTKP-LIANFCKIDRTLLLSDEILLRILSKLPDSQRNSNFL 117

[Close]

BLAST of Carg11457 vs. TrEMBL
Match: tr|A0A1S3BYL5|A0A1S3BYL5_CUCME (F-box protein At5g51380-like OS=Cucumis melo OX=3656 GN=LOC103494490 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MGYAHGRAQSVLFEAE-RRSSISS-------------------------KDTESLESVIV 60
           MG+A+ R QSVL E E RRSSISS                         K+T +LE+VIV
Sbjct: 1   MGFANHRQQSVLLEGERRRSSISSVPSPQTNPNSPVKKKRTPRWSDVWLKNTNTLENVIV 60

Query: 61  AMQLQSSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           AMQLQS  KDSHIPTPN KT PLL ANFCKID TLLLSDELLLRI +KLPDSQRNS FL
Sbjct: 61  AMQLQSFSKDSHIPTPNSKTKPLL-ANFCKIDRTLLLSDELLLRILSKLPDSQRNSNFL 118

[Close]

BLAST of Carg11457 vs. TrEMBL
Match: tr|A0A0A0KZ56|A0A0A0KZ56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022330 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-23
Identity = 73/119 (61.34%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MGYAHGRAQSVLFEAE-RRSSISS-------------------------KDTESLESVIV 60
           MG+A+ R QSVL E E RRSSISS                         K+T SLE+VI+
Sbjct: 1   MGFANHRQQSVLLEGERRRSSISSVPSPQTNPNSPVKKKRTPRWSDVWLKNTNSLENVIL 60

Query: 61  AMQLQSSGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDELLLRIHTKLPDSQRNSTFL 94
           AM+LQS  KDSHIPTPN KT PLL ANFCKID TLLLSDELLLRI +KLPDSQRNS FL
Sbjct: 61  AMKLQSFSKDSHIPTPNSKTKPLL-ANFCKIDRTLLLSDELLLRILSKLPDSQRNSNFL 118

[Close]

BLAST of Carg11457 vs. TrEMBL
Match: tr|A0A067JEV5|A0A067JEV5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26267 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 19 SSISSKDTESLESVIVAMQLQS-SGKDSHIPTPNFKTN-PLLIANFCKIDCTLLLSDELL 78
          S +  K+T+ L+ V+ AMQLQS SG  +  PT + KT    LI NF KID TLLLSDELL
Sbjct: 25 SDLWLKNTKPLKHVVFAMQLQSLSGPPT--PTKDSKTKAENLIRNFAKIDRTLLLSDELL 84

Query: 79 LRIHTKLPDSQRNSTFL 94
          L+I +KLPDSQRN  FL
Sbjct: 85 LKILSKLPDSQRNPNFL 99

[Close]

BLAST of Carg11457 vs. TrEMBL
Match: tr|A0A2C9UIH9|A0A2C9UIH9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G036800 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 19 SSISSKDTESLESVIVAMQLQSSGKDSHIPTP----NFKT-NPLLIANFCKIDCTLLLSD 78
          S +  K+T+ L+ V+ AMQL S      IPTP      KT    LI+NF  ID TLLLSD
Sbjct: 24 SDLWLKNTKPLKHVVFAMQLPS------IPTPTSTKGSKTKGQTLISNFSNIDRTLLLSD 83

Query: 79 ELLLRIHTKLPDSQRNSTFL 94
          EL+L+I +KLPDSQRNS FL
Sbjct: 84 ELVLKILSKLPDSQRNSNFL 97

[Close]

BLAST of Carg11457 vs. TrEMBL
Match: tr|A0A1R3JTQ7|A0A1R3JTQ7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14103 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 17 RRSSISSKDTESLESVIVAMQLQS-SGKDSHIPTPNFKTNPLLIANFCKIDCTLLLSDEL 76
          R S I  K T+SL  V++AMQLQS + KD     P  +T   LI NF  +D TLLLSDEL
Sbjct: 18 RWSDIWLKKTKSLNHVVLAMQLQSLASKD-----PKSQT---LIPNFVTLDRTLLLSDEL 77

Query: 77 LLRIHTKLPDSQRNSTFL 94
          LL+I +KLP SQRN+  L
Sbjct: 78 LLKILSKLPPSQRNNNSL 87

The following BLAST results are available for this feature:

BLAST of Carg11457 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942171.1	5.4e-29	70.18	F-box protein At5g51370-like [Cucurbita moschata]	[more]
XP_023528939.1	3.5e-28	68.42	F-box protein At5g51370-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968261.1	2.5e-26	68.42	F-box protein At5g51380-like [Cucurbita maxima]	[more]
XP_022985477.1	3.1e-24	61.86	F-box protein At5g51380-like [Cucurbita maxima]	[more]
XP_022922488.1	6.9e-24	61.02	F-box protein At5g51380-like [Cucurbita moschata]	[more]

BLAST of Carg11457 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11457 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11457 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYL5\|A0A1S3BYL5_CUCME	2.9e-23	62.18	F-box protein At5g51380-like OS=Cucumis melo OX=3656 GN=LOC103494490 PE=4 SV=1	[more]
tr\|A0A0A0KZ56\|A0A0A0KZ56_CUCSA	8.6e-23	61.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022330 PE=4 SV=1	[more]
tr\|A0A067JEV5\|A0A067JEV5_JATCU	2.0e-08	58.44	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26267 PE=4 SV=1	[more]
tr\|A0A2C9UIH9\|A0A2C9UIH9_MANES	3.9e-07	53.75	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G036800 PE=4 SV=...	[more]
tr\|A0A1R3JTQ7\|A0A1R3JTQ7_9ROSI	4.3e-06	53.85	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14103 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11457-RA	Carg11457-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11457	Silver-seed gourd	carcarB009
Carg11457	Cucumber (Gy14) v2	carcgybB0012
Carg11457	Cucumber (Gy14) v1	carcgyB0011
Carg11457	Cucurbita maxima (Rimu)	carcmaB0020
Carg11457	Cucurbita maxima (Rimu)	carcmaB0021
Carg11457	Cucurbita moschata (Rifu)	carcmoB0021
Carg11457	Cucurbita moschata (Rifu)	carcmoB0022
Carg11457	Cucurbita pepo (Zucchini)	carcpeB0020
Carg11457	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11457	Wild cucumber (PI 183967)	carcpiB0013
Carg11457	Cucumber (Chinese Long) v2	carcuB0013
Carg11457	Cucumber (Chinese Long) v3	carcucB0013
Carg11457	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11457	Melon (DHL92) v3.5.1	carmeB0011
Carg11457	Melon (DHL92) v3.6.1	carmedB0012
Carg11457	Watermelon (Charleston Gray)	carwcgB0012
Carg11457	Watermelon (97103) v1	carwmB0014
Carg11457	Watermelon (97103) v2	carwmbB0012
Carg11457	Wax gourd	carwgoB0015