Carg11354 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11354
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial
Location	Cucurbita_argyrosperma_scaffold_025 : 450044 .. 452694 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAAGAGTGATAAGCCATCGGCAAAACCCTGTCTTTGTTTCAGCCCTCTACCATGGCGACTCAGCTCTTCTCTCGCTCGCTCCCTAAAACCCTAATTTTGACGTCTATGTTCTCTCGTTCCTTTCTCACTGCCAACCGAGCCGCCATCTCCGCCTCTTCTTGCTCCTCTTCCTCCCTTCTGCGCTATCTCCGTCCCCTCACTGCTATAGTCGGCGCTGATTTCCGCAGCGTCTCTCCGGCGCCGAGCGTGAGGGAGTTTGCTACCCGTGCGACTTCTTCCTCTCTCAACGACCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGACTATATTGCTCGATGGTTGTGATTTTGAGCACTGGCTCGTTGTCATGGAGAAGCCAGAGGGGGATCCCACCAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTATCGGAAGGTGAAGTTTTGTTCTCGTCGATTGTGTTAGATTTTTTTTTTATTTTTCCCTAACATTGGCCTGCCCTAATGATCGTATTAAATCGTGTCTCTTTTGGTATTTTAGTGATTATAGTAAGGTATCTAGAAGAGAATGGTGAATGCTTTAATTTTTCTGGCGCTGAATCAAAGTATGTAGAGAAGAATTTCCTCATGGGATTTGTCCTAGTTTTTCCAATGTTTGAGATGGTTATCACTCGACAAAATACGTTCAAATATATTTCTTAAGTATAACTGTTAGTCTCTAATAATGGTCACTGTCAATTCTTACAAAAATCATTATCAGTATCGACTGTTTATAAATATTCTCTGAAATTTTTATGGAAGATGGAATTTGAGAATTCTGAATGGAATTGTGGCTCACCACAGGTACTACTTTGTTCTATCGGCTTCTTTCACTAAAGGATAATTTTGCCGTATGTCGGTGTCTATTTGAAATCATTCGGGTATCTGATTTTTACTGCATTTTCCTATTTGGCATCTTGTTGTTACAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAACTTTCTTACAAGATCAAAGGTGGCATACCTTTATGTCCTGTTTTATTTTATTTCGTTGTGTTGGTTATTTCTTTCTTTTGTATTGATTGTATGAGGTTGTGCCTTTTCCTCCTCAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTCAAGAATAAAGATTATGGAGGTAATTCCTTTTCTTTCAGTGTCTAATTTTTGTAAATAGAAGTCAGTAGTTCTAATTGAGTATTCCTGGTATGGAGGCAGAGTTACATATGCTTGATAATTTGAAGCTCTTATATGATGGTGTAGGGTCCTGACTCCTTCATGCCTCGTGCTTATTATGTCTAATAAGCTAAAATAATGTGTCAGAATGTAATGCACTCCTGAGCAAACTGTCCGTAAATGGAGCGTTTCAATGAAAGCTCTAATATTTAAGTTTCTCGTCCTTACACCGATAAACATAATCGGAAAGCTCGTATTTCTTGCAAACAATCAAGGGTCAATTGTAAAGCCAGTGTCTTTTTGTTGTAGTGTTTCCCTTTGGAGAACTCGCTAAATGGTGTTGTGATGGTCCACGTCTTGTGGCTAAAACTATTTTGCTGTTTGGTATGGAGTTGTACAGAACTATTATCTGATTTTCTGCGTCGTTTTTCCTTTGGCAGGGGAGCCTTTTATCAACGGACAAGCTGTTCCATATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGCTCGAGCGAATGAGAGGAATAAGCGCAATGATAGACCTCGTAATTTTGACAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAGTAGAGAATTTCCAAATGCTTCACCAAATCAACCTACTGGACCAAACATGAGTCCACCAGCTCCAAGCAATATGCCTCCCAACAATTTTAACGCCGGTATGCCGCCTCAGAACCGTGGAGGAATGCCCCAAGGCAACTATGCAGGAGGACCACCACCGCCGCCACCAAACAACTTCAGCGGACCGCCACCACCACACAACTATGCAGGAGGACCACCACCACCGCCACCAAACAACTTTGGCGGACCGCCGCCGCCACCACTGAACAACTATGCTGGACAACCACCACGCAACTATGCACCACCACCACCACCGCACTCCGGGCCAGCACCACCACACAACTATGGAGGGCCACAGCCAAACAACTATTGGGGAGGTCCACCGCCAAACAACTACGGTGGACCTTCACACTCCGGCGGGCCACCTCCACACAACAACTATGGAGGAGGAGGGCAGCCTAATGTTGGTGGATGGTCCAGTAATGTGCATAACAAGCAACACGAGTAAGTCCTTAACTGGTCAGGGAGTTCATTAGTTGTTTGGATTTAATGGCTGCTTGGTTCAAGTCTTAAATCCTTCTGGTCACTGAGTATTTGTTCTGGTGCTACGAACGATAGAGTTTTAGTTTTGCTTTCTGAGTAGGAATATGCTATAAAAACCCATTAGAAGTTCTAAATTCAAGTACTGTTTAAAAGATGCATGAAATTATGTAATATTCATAATGTTTCCTTTGTTTATGAAGTGGGCAATGGTATTTGTCTCT

mRNA sequence

TTTTAAAGAGTGATAAGCCATCGGCAAAACCCTGTCTTTGTTTCAGCCCTCTACCATGGCGACTCAGCTCTTCTCTCGCTCGCTCCCTAAAACCCTAATTTTGACGTCTATGTTCTCTCGTTCCTTTCTCACTGCCAACCGAGCCGCCATCTCCGCCTCTTCTTGCTCCTCTTCCTCCCTTCTGCGCTATCTCCGTCCCCTCACTGCTATAGTCGGCGCTGATTTCCGCAGCGTCTCTCCGGCGCCGAGCGTGAGGGAGTTTGCTACCCGTGCGACTTCTTCCTCTCTCAACGACCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGACTATATTGCTCGATGGTTGTGATTTTGAGCACTGGCTCGTTGTCATGGAGAAGCCAGAGGGGGATCCCACCAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTATCGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAACTTTCTTACAAGATCAAAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTCAAGAATAAAGATTATGGAGGGGAGCCTTTTATCAACGGACAAGCTGTTCCATATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGCTCGAGCGAATGAGAGGAATAAGCGCAATGATAGACCTCGTAATTTTGACAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAGTAGAGAATTTCCAAATGCTTCACCAAATCAACCTACTGGACCAAACATGAGTCCACCAGCTCCAAGCAATATGCCTCCCAACAATTTTAACGCCGGTATGCCGCCTCAGAACCGTGGAGGAATGCCCCAAGGCAACTATGCAGGAGGACCACCACCGCCGCCACCAAACAACTTCAGCGGACCGCCACCACCACACAACTATGCAGGAGGACCACCACCACCGCCACCAAACAACTTTGGCGGACCGCCGCCGCCACCACTGAACAACTATGCTGGACAACCACCACGCAACTATGCACCACCACCACCACCGCACTCCGGGCCAGCACCACCACACAACTATGGAGGGCCACAGCCAAACAACTATTGGGGAGGTCCACCGCCAAACAACTACGGTGGACCTTCACACTCCGGCGGGCCACCTCCACACAACAACTATGGAGGAGGAGGGCAGCCTAATGTTGGTGGATGGTCCAGTAATGTGCATAACAAGCAACACGAGTAAGTCCTTAACTGGTCAGGGAGTTCATTAGTTGTTTGGATTTAATGGCTGCTTGGTTCAAGTCTTAAATCCTTCTGGTCACTGAGTATTTGTTCTGGTGCTACGAACGATAGAGTTTTAGTTTTGCTTTCTGAGTAGGAATATGCTATAAAAACCCATTAGAAGTTCTAAATTCAAGTACTGTTTAAAAGATGCATGAAATTATGTAATATTCATAATGTTTCCTTTGTTTATGAAGTGGGCAATGGTATTTGTCTCT

Coding sequence (CDS)

ATGGCGACTCAGCTCTTCTCTCGCTCGCTCCCTAAAACCCTAATTTTGACGTCTATGTTCTCTCGTTCCTTTCTCACTGCCAACCGAGCCGCCATCTCCGCCTCTTCTTGCTCCTCTTCCTCCCTTCTGCGCTATCTCCGTCCCCTCACTGCTATAGTCGGCGCTGATTTCCGCAGCGTCTCTCCGGCGCCGAGCGTGAGGGAGTTTGCTACCCGTGCGACTTCTTCCTCTCTCAACGACCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGACTATATTGCTCGATGGTTGTGATTTTGAGCACTGGCTCGTTGTCATGGAGAAGCCAGAGGGGGATCCCACCAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTATCGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAACTTTCTTACAAGATCAAAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTCAAGAATAAAGATTATGGAGGGGAGCCTTTTATCAACGGACAAGCTGTTCCATATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGCTCGAGCGAATGAGAGGAATAAGCGCAATGATAGACCTCGTAATTTTGACAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAGTAGAGAATTTCCAAATGCTTCACCAAATCAACCTACTGGACCAAACATGAGTCCACCAGCTCCAAGCAATATGCCTCCCAACAATTTTAACGCCGGTATGCCGCCTCAGAACCGTGGAGGAATGCCCCAAGGCAACTATGCAGGAGGACCACCACCGCCGCCACCAAACAACTTCAGCGGACCGCCACCACCACACAACTATGCAGGAGGACCACCACCACCGCCACCAAACAACTTTGGCGGACCGCCGCCGCCACCACTGAACAACTATGCTGGACAACCACCACGCAACTATGCACCACCACCACCACCGCACTCCGGGCCAGCACCACCACACAACTATGGAGGGCCACAGCCAAACAACTATTGGGGAGGTCCACCGCCAAACAACTACGGTGGACCTTCACACTCCGGCGGGCCACCTCCACACAACAACTATGGAGGAGGAGGGCAGCCTAATGTTGGTGGATGGTCCAGTAATGTGCATAACAAGCAACACGAGTAA

Protein sequence

MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSREFPNASPNQPTGPNMSPPAPSNMPPNNFNAGMPPQNRGGMPQGNYAGGPPPPPPNNFSGPPPPHNYAGGPPPPPPNNFGGPPPPPLNNYAGQPPRNYAPPPPPHSGPAPPHNYGGPQPNNYWGGPPPNNYGGPSHSGGPPPHNNYGGGGQPNVGGWSSNVHNKQHE

Homology

[Close]

BLAST of Carg11354 vs. NCBI nr
Match: XP_023552822.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.6 bits (1241), Expect = 1.3e-132
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV
Sbjct: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI
Sbjct: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP 278
           XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP
Sbjct: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP 277

[Close]

BLAST of Carg11354 vs. NCBI nr
Match: XP_022984464.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 479.9 bits (1234), Expect = 8.4e-132
Identity = 278/289 (96.19%), Postives = 278/289 (96.19%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRS PKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV
Sbjct: 1   MATQLFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           SPA SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI
Sbjct: 61  SPASSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMPPQNRGGMPQGNY 290
           XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP         GNY
Sbjct: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMPXXXXXXXXXGNY 289

[Close]

BLAST of Carg11354 vs. NCBI nr
Match: XP_022984463.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 3.2e-131
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRS PKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV
Sbjct: 1   MATQLFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           SPA SVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI
Sbjct: 61  SPASSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP 278
           XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP
Sbjct: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMP 277

[Close]

BLAST of Carg11354 vs. NCBI nr
Match: XP_022922871.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 473.8 bits (1218), Expect = 6.0e-130
Identity = 275/289 (95.16%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV
Sbjct: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI
Sbjct: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMPPQNRGGMPQGNY 290
           XXXXXX NASPNQPT XX           NNFNAGM PQNRGGMPQGNY
Sbjct: 241 XXXXXXPNASPNQPTXXXXXXXXXXXXXXNNFNAGMSPQNRGGMPQGNY 289

[Close]

BLAST of Carg11354 vs. NCBI nr
Match: XP_022922870.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 449.9 bits (1156), Expect = 9.3e-123
Identity = 266/289 (92.04%), Postives = 266/289 (92.04%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV
Sbjct: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI
Sbjct: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAGMPPQNRGGMPQGNY 290
           XXXXXX NASPNQPT XX            NFNAGM         QGNY
Sbjct: 241 XXXXXXPNASPNQPTXXXXXXXXXXXXXXXNFNAGMXXXXXXXXXQGNY 289

[Close]

BLAST of Carg11354 vs. TAIR10
Match: AT3G15000.1 (cobalt ion binding)

HSP 1 Score: 298.9 bits (764), Expect = 4.8e-81
Identity = 154/219 (70.32%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 1   MATQLFSRSL--PKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFR 60
           MAT   SRS+       L+ +F+RSF  A+ A ++ S   +SSLL   RPL A   + FR
Sbjct: 1   MATHTISRSILCRPAKSLSFLFTRSF--ASSAPLAKS--PASSLLSRSRPLVAAFSSVFR 60

Query: 61  SVSPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRD 120
                 SV+  +T+ATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVV+E P+G+PTRD
Sbjct: 61  --GGLVSVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRD 120

Query: 121 EIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180
           EIIDSYIKTLA ++GSE+EARMKIYSVSTRCY+AFG LVSE+LS+K+KEL  VRWVLPDS
Sbjct: 121 EIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDS 180

Query: 181 YLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANE 218
           YLDV+NKDYGGEPFI+G+AVPYDPKYHEEWIRNNARANE
Sbjct: 181 YLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANE 213

[Close]

BLAST of Carg11354 vs. TAIR10
Match: AT3G06790.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-48
Identity = 103/199 (51.76%), Postives = 130/199 (65.33%), Query Frame = 0


Query: 7   SRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPA-PS 66
           S  L KTL  ++ +S SF T             SS  R+  PL   V +   S+ P   S
Sbjct: 11  STLLNKTLSSSTSYSSSFPTL------------SSRSRFAMPLIEKVSSSRTSLGPCYIS 70

Query: 67  VREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYI 126
            R   + +  S LNDP+PNWSNRPPKETILLDGCD+EHWL+VME  +  PT +E+I+SY+
Sbjct: 71  TRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYV 130

Query: 127 KTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNK 186
           KTL  V+G +EEA+ KIYSV T  Y  FG L+SEELS K+K LP V WVLPDSYLDV NK
Sbjct: 131 KTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNK 190

Query: 187 DYGGEPFINGQAVPYDPKY 205
           DYGG+ ++ G+ +P  P+Y
Sbjct: 191 DYGGDLYVEGKVIP-RPQY 196

[Close]

BLAST of Carg11354 vs. TAIR10
Match: AT1G72530.2 (plastid developmental protein DAG, putative)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-40
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 47  RPLTAIVGADFRSVSPAPSVREFATRATSSSLNDPNPNWSN--RPPKETILLDGCDFEHW 106
           RPL       FR    +P          S S+N    +WS   R P    L++GCD++HW
Sbjct: 7   RPLNLTAAVRFRLSPLSP------FSGNSGSINSETTSWSELIRVPS---LVEGCDYKHW 66

Query: 107 LVVMEKPEGDPTRDEIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYK 166
           LV+M+ P G PTR+ I+ S+++TLAM +GSEEEA+  IYSVST+ Y+AFGC + E L+YK
Sbjct: 67  LVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYK 126

Query: 167 IKELPKVRWVLPDSYLDVKNKDYG----GEPFINGQAVPYDPKYHEEWIRN 212
           I+ LP V+WVLPDS++   +  YG    GEPF++G+ VPYD KYH +W+R+
Sbjct: 127 IRSLPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDGEVVPYDEKYHADWLRD 168

[Close]

BLAST of Carg11354 vs. TAIR10
Match: AT2G35240.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-35
Identity = 86/211 (40.76%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 18  SMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAPSVREFATRAT--- 77
           S  ++ F + + A  S S   S  + R   P        F +V   P++  F T  T   
Sbjct: 11  SCVAKRFFSTSNAVASPSPLPSHLISRRFSPTI------FHAVGYIPALTRFTTIRTRMD 70

Query: 78  ----SSSLNDPNPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDSYIKTL 137
               S S      N+S+RPP E   L  GCD+EHWL+VMEKP G+   + ++ID Y++TL
Sbjct: 71  RSGGSYSPLKSGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTL 130

Query: 138 AMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYG 197
           A ++GSEEEAR KIY+VS   YF FGC + EE S K++ LP V +VLPDSY+D + KDYG
Sbjct: 131 AKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYG 190

Query: 198 GEPFINGQAVPYDPKYHEEWIR-NNARANER 219
            E F+NG+ VP  P+     +   N R +++
Sbjct: 191 AELFVNGEVVPRPPERQRRMVELTNQRGSDK 215

[Close]

BLAST of Carg11354 vs. TAIR10
Match: AT1G11430.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-35
Identity = 83/199 (41.71%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 23  SFLTANRAAISASSCSSSSLLRYLRPLTAIVGAD-----FRSVSPAPSVREFATRATSSS 82
           SF T + +++   +    S L     L+ I   D      R++S A S R  A    ++ 
Sbjct: 3   SFTTTSSSSLLLKTLLPVSHLNRFSTLSGIRVGDSWTPLLRNISTAGSRRRVAIVKAATV 62

Query: 83  LNDPNPNWSN-RPPKETILLDGCDFEHWLVVMEKPEGD-PTRDEIIDSYIKTLAMVIGSE 142
            +D +   SN    +ETI+L GCD+ HWL+VME P+   P+RD++ID+Y+ TLA V+GS 
Sbjct: 63  DSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSM 122

Query: 143 EEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFING 202
           EEA+  +Y+ ST  Y  F C + EE S K K LP V WVLPDSY+DVKNKDYGG+ +ING
Sbjct: 123 EEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYING 182

Query: 203 QAVPYDPKYHEEWIRNNAR 215
           + +P     ++   RNN +
Sbjct: 183 EIIPCTYPTYQPKQRNNTK 201

[Close]

BLAST of Carg11354 vs. Swiss-Prot
Match: sp|Q9LKA5|MORF8_ARATH (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 8.6e-80
Identity = 154/219 (70.32%), Postives = 179/219 (81.74%), Query Frame = 0


Query: 1   MATQLFSRSL--PKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFR 60
           MAT   SRS+       L+ +F+RSF  A+ A ++ S   +SSLL   RPL A   + FR
Sbjct: 1   MATHTISRSILCRPAKSLSFLFTRSF--ASSAPLAKS--PASSLLSRSRPLVAAFSSVFR 60

Query: 61  SVSPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRD 120
                 SV+  +T+ATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVV+E P+G+PTRD
Sbjct: 61  --GGLVSVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRD 120

Query: 121 EIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180
           EIIDSYIKTLA ++GSE+EARMKIYSVSTRCY+AFG LVSE+LS+K+KEL  VRWVLPDS
Sbjct: 121 EIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDS 180

Query: 181 YLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANE 218
           YLDV+NKDYGGEPFI+G+AVPYDPKYHEEWIRNNARANE
Sbjct: 181 YLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANE 213

[Close]

BLAST of Carg11354 vs. Swiss-Prot
Match: sp|Q84JZ6|MORF3_ARATH (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.7e-48
Identity = 104/199 (52.26%), Postives = 130/199 (65.33%), Query Frame = 0


Query: 7   SRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPA-PS 66
           S  L KTL  ++ +S SF T             SS  R+  PL   V +   S+ P   S
Sbjct: 11  STLLNKTLSSSTSYSSSFPTL------------SSRSRFAMPLIEKVSSSRTSLGPCYIS 70

Query: 67  VREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYI 126
            R   + +  S LNDP+PNWSNRPPKETILLDGCD+EHWL+VME  +  PT +E+I+SY+
Sbjct: 71  TRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYV 130

Query: 127 KTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNK 186
           KTL  V+G EEEA+ KIYSV T  Y  FG L+SEELS K+K LP V WVLPDSYLDV NK
Sbjct: 131 KTLTSVLGCEEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNK 190

Query: 187 DYGGEPFINGQAVPYDPKY 205
           DYGG+ ++ G+ +P  P+Y
Sbjct: 191 DYGGDLYVEGKVIP-RPQY 196

[Close]

BLAST of Carg11354 vs. Swiss-Prot
Match: sp|Q9CAH0|MORF7_ARATH (Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF7 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-41
Identity = 80/167 (47.90%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 47  RPLTAIVGADFRSVSPAPSVREFATRATSSSLNDPNPNWSN--RPPKETILLDGCDFEHW 106
           RPL       FR    +P          S S+N    +WS   R P    L++GCD++HW
Sbjct: 7   RPLNLTAAVRFRLSPLSP------FSGNSGSINSETTSWSELIRVPS---LVEGCDYKHW 66

Query: 107 LVVMEKPEGDPTRDEIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYK 166
           LV+M+ P G PTR+ I+ S+++TLAM +GSEEEA+  IYSVST+ Y+AFGC + E L+YK
Sbjct: 67  LVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYK 126

Query: 167 IKELPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRN 212
           I+ LP V+WVLPDS++   +  YGGEPF++G+ VPYD KYH +W+R+
Sbjct: 127 IRSLPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWLRD 164

[Close]

BLAST of Carg11354 vs. Swiss-Prot
Match: sp|O82169|MORF6_ARATH (Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF6 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-34
Identity = 86/211 (40.76%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 18  SMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAPSVREFATRAT--- 77
           S  ++ F + + A  S S   S  + R   P        F +V   P++  F T  T   
Sbjct: 11  SCVAKRFFSTSNAVASPSPLPSHLISRRFSPTI------FHAVGYIPALTRFTTIRTRMD 70

Query: 78  ----SSSLNDPNPNWSNRPPKETI-LLDGCDFEHWLVVMEKPEGD-PTRDEIIDSYIKTL 137
               S S      N+S+RPP E   L  GCD+EHWL+VMEKP G+   + ++ID Y++TL
Sbjct: 71  RSGGSYSPLKSGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTL 130

Query: 138 AMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYG 197
           A ++GSEEEAR KIY+VS   YF FGC + EE S K++ LP V +VLPDSY+D + KDYG
Sbjct: 131 AKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYG 190

Query: 198 GEPFINGQAVPYDPKYHEEWIR-NNARANER 219
            E F+NG+ VP  P+     +   N R +++
Sbjct: 191 AELFVNGEVVPRPPERQRRMVELTNQRGSDK 215

[Close]

BLAST of Carg11354 vs. Swiss-Prot
Match: sp|Q9LPZ1|MORF9_ARATH (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-34
Identity = 83/199 (41.71%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 23  SFLTANRAAISASSCSSSSLLRYLRPLTAIVGAD-----FRSVSPAPSVREFATRATSSS 82
           SF T + +++   +    S L     L+ I   D      R++S A S R  A    ++ 
Sbjct: 3   SFTTTSSSSLLLKTLLPVSHLNRFSTLSGIRVGDSWTPLLRNISTAGSRRRVAIVKAATV 62

Query: 83  LNDPNPNWSN-RPPKETILLDGCDFEHWLVVMEKPEGD-PTRDEIIDSYIKTLAMVIGSE 142
            +D +   SN    +ETI+L GCD+ HWL+VME P+   P+RD++ID+Y+ TLA V+GS 
Sbjct: 63  DSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSM 122

Query: 143 EEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFING 202
           EEA+  +Y+ ST  Y  F C + EE S K K LP V WVLPDSY+DVKNKDYGG+ +ING
Sbjct: 123 EEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYING 182

Query: 203 QAVPYDPKYHEEWIRNNAR 215
           + +P     ++   RNN +
Sbjct: 183 EIIPCTYPTYQPKQRNNTK 201

[Close]

BLAST of Carg11354 vs. TrEMBL
Match: tr|A0A1S3BTA4|A0A1S3BTA4_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492931 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.7e-113
Identity = 243/275 (88.36%), Postives = 251/275 (91.27%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQLFSRSLPKTLI TS FSRSFLTA  AA+SASS SSSSLLR LRPL AI+ ADFR  
Sbjct: 1   MATQLFSRSLPKTLIWTSTFSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCH 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           S APSVR+F+TRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKP+   TRDEI
Sbjct: 61  SAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMV+GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANER XXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFNAG 276
           XXXXX  N S NQPTG  MS  APS+MPPNNF+ G
Sbjct: 241 XXXXXFPNPSANQPTGPNMSAQAPSSMPPNNFSPG 275

[Close]

BLAST of Carg11354 vs. TrEMBL
Match: tr|A0A0A0KXM3|A0A0A0KXM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.8e-105
Identity = 242/329 (73.56%), Postives = 250/329 (75.99%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MAT LFSRSLPKTLI TS FSRSFLTA  AAISASS SSSSL+R LRPL AI+ ADFR  
Sbjct: 1   MATHLFSRSLPKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAADFRCH 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           S APS+R+F+TRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKP+   TRDEI
Sbjct: 61  SAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           IDSYIKTLAMV+GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFI+GQAVPYDPKYHEEWIRNNARANER    XXXXXXXXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANER----XXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPS----------------------------------- 284
           XXXXXXX   PN  TG  MS PAP                                    
Sbjct: 241 XXXXXXXXXXPNPATGPNMSAPAPGACLLTTAKAIIQEDHHLRTILTDHHRXXXXXXXXX 300

[Close]

BLAST of Carg11354 vs. TrEMBL
Match: tr|A0A1S3BSY7|A0A1S3BSY7_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492930 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100
Identity = 216/272 (79.41%), Postives = 229/272 (84.19%), Query Frame = 0


Query: 1   MATQLFSRSLPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSV 60
           MATQ FS SLPKTL   S+FSRSFLTA  A IS SS SSSSLLR LRPL AI+ ADF   
Sbjct: 1   MATQRFSCSLPKTL---SLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCH 60

Query: 61  SPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEI 120
           S APSVR F+TR+TSSS+ DPNPN S+RPPKETILLDGCDFEHWLVVMEKP+   TRDEI
Sbjct: 61  SAAPSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEI 120

Query: 121 IDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180
           ID+YIKTLAMV+GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL
Sbjct: 121 IDTYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

Query: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXXXX 240
           DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNA+   R          XXXXXXXXXXXX
Sbjct: 181 DVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNAKI-RRPDVNGRRNFDXXXXXXXXXXXX 240

Query: 241 XXXXXXXNASPNQPTGXXMSPPAPSNMPPNNF 273
           XXXX   N S +QPTG  +SPPAPS+MPPNNF
Sbjct: 241 XXXXFPNNVSASQPTGPKLSPPAPSSMPPNNF 268

[Close]

BLAST of Carg11354 vs. TrEMBL
Match: tr|A0A0A0KPF6|A0A0A0KPF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167045 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 218/275 (79.27%), Postives = 228/275 (82.91%), Query Frame = 0


Query: 1   MATQLF-SRSLP-KTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFR 60
           MATQLF SRSLP K LIL+SMF+RSFL    A ISASS SS SLLR  RPL AI  ADFR
Sbjct: 1   MATQLFVSRSLPSKALILSSMFTRSFLATGGATISASSHSSFSLLRRFRPLVAIPAADFR 60

Query: 61  SVSPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRD 120
            +SPA +VR+FATR  SSSLNDPNPNWSNRPPKETILLDGCDFEHWL+VMEKP+   TRD
Sbjct: 61  RLSPALTVRDFATRVASSSLNDPNPNWSNRPPKETILLDGCDFEHWLIVMEKPDEQLTRD 120

Query: 121 EIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180
           EIIDSYIKTLAMV+GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS
Sbjct: 121 EIIDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180

Query: 181 YLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERXXXXXXXXXXXXXXXXXXXX 240
           YLDVKNK YGGEPFI+GQAVPYDP YHEEWIRNNA+A ER      XXXXXXXXXXXXXX
Sbjct: 181 YLDVKNKSYGGEPFIHGQAVPYDPMYHEEWIRNNAKAGER-NKRIVXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXNASPNQPTGXXMSPPAPSNMPPNNFN 274
           XXXXXXX  NASPNQP             PP NFN
Sbjct: 241 XXXXXXXFPNASPNQP-------------PPYNFN 261

[Close]

BLAST of Carg11354 vs. TrEMBL
Match: tr|A0A1S3ASM8|A0A1S3ASM8_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103482565 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 176/211 (83.41%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MATQL-FSRSL-PKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFR 60
           MATQL FSRSL PKTL+L+SMFSRSFL      ISASS SS SLLR  RPL AI  ADFR
Sbjct: 1   MATQLFFSRSLPPKTLMLSSMFSRSFLATTGVTISASSHSSFSLLRRFRPLAAIPAADFR 60

Query: 61  SVSPAPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRD 120
            +SPAP+V++F+TR  SSSLNDPNPNWSNR PKETILLDGCDFEHWLVVME P+   TRD
Sbjct: 61  RLSPAPTVKDFSTRVASSSLNDPNPNWSNRTPKETILLDGCDFEHWLVVMENPDEQLTRD 120

Query: 121 EIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180
           EIIDSYIKTLAMV+GSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS
Sbjct: 121 EIIDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDS 180

Query: 181 YLDVKNKDYGGEPFINGQAVPYDPKYHEEWI 210
           YLDVKNK YGGEPFI+G+AVPYDPKYHEEWI
Sbjct: 181 YLDVKNKSYGGEPFIDGEAVPYDPKYHEEWI 211

The following BLAST results are available for this feature:

BLAST of Carg11354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552822.1	1.3e-132	100.00	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucu...	[more]
XP_022984464.1	8.4e-132	96.19	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2...	[more]
XP_022984463.1	3.2e-131	99.28	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]
XP_022922871.1	6.0e-130	95.16	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2...	[more]
XP_022922870.1	9.3e-123	92.04	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1...	[more]

BLAST of Carg11354 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15000.1	4.8e-81	70.32	cobalt ion binding	[more]
AT3G06790.1	1.8e-48	51.76	plastid developmental protein DAG, putative	[more]
AT1G72530.2	1.4e-40	46.78	plastid developmental protein DAG, putative	[more]
AT2G35240.1	1.8e-35	40.76	plastid developmental protein DAG, putative	[more]
AT1G11430.1	2.3e-35	41.71	plastid developmental protein DAG, putative	[more]

BLAST of Carg11354 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LKA5\|MORF8_ARATH	8.6e-80	70.32	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
sp\|Q84JZ6\|MORF3_ARATH	8.7e-48	52.26	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
sp\|Q9CAH0\|MORF7_ARATH	4.6e-41	47.90	Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana ...	[more]
sp\|O82169\|MORF6_ARATH	3.2e-34	40.76	Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana ...	[more]
sp\|Q9LPZ1\|MORF9_ARATH	4.2e-34	41.71	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Carg11354 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTA4\|A0A1S3BTA4_CUCME	5.7e-113	88.36	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis...	[more]
tr\|A0A0A0KXM3\|A0A0A0KXM3_CUCSA	5.8e-105	73.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1	[more]
tr\|A0A1S3BSY7\|A0A1S3BSY7_CUCME	1.5e-100	79.41	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu...	[more]
tr\|A0A0A0KPF6\|A0A0A0KPF6_CUCSA	2.9e-96	79.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167045 PE=4 SV=1	[more]
tr\|A0A1S3ASM8\|A0A1S3ASM8_CUCME	7.3e-92	83.41	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016554	cytidine to uridine editing

Vocabulary: **INTERPRO**
Term	Definition
IPR039206	MORF/ORRM1/DAG-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11354-RA	Carg11354-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..410
None	No IPR available	PANTHER	PTHR31346:SF4	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL	coord: 16..406
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	FAMILY NOT NAMED	coord: 16..406

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11354	Cla002437	Watermelon (97103) v1	carwmB0653
Carg11354	Csa4G083630	Cucumber (Chinese Long) v2	carcuB0677
Carg11354	MELO3C016106	Melon (DHL92) v3.5.1	carmeB0652
Carg11354	ClCG07G010040	Watermelon (Charleston Gray)	carwcgB0637
Carg11354	CSPI04G08070	Wild cucumber (PI 183967)	carcpiB0687
Carg11354	Cucsa.273530	Cucumber (Gy14) v1	carcgyB0735
Carg11354	CmaCh04G005700	Cucurbita maxima (Rimu)	carcmaB0925
Carg11354	CmaCh16G004230	Cucurbita maxima (Rimu)	carcmaB0924
Carg11354	CmoCh04G006100	Cucurbita moschata (Rifu)	carcmoB0899
Carg11354	CmoCh16G004550	Cucurbita moschata (Rifu)	carcmoB0898
Carg11354	Lsi07G002940	Bottle gourd (USVL1VR-Ls)	carlsiB597
Carg11354	Cp4.1LG14g03510	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11354	Cp4.1LG01g01460	Cucurbita pepo (Zucchini)	carcpeB0927
Carg11354	CsGy4G007920	Cucumber (Gy14) v2	carcgybB0652
Carg11354	MELO3C016106.2	Melon (DHL92) v3.6.1	carmedB0662
Carg11354	CsaV3_4G008290	Cucumber (Chinese Long) v3	carcucB0689
Carg11354	Cla97C07G136730	Watermelon (97103) v2	carwmbB0682
Carg11354	Bhi01G002507	Wax gourd	carwgoB0770

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11354	Carg13167	Silver-seed gourd	carcarB051

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11354	Cucumber (Gy14) v2	carcgybB0653
Carg11354	Wild cucumber (PI 183967)	carcpiB0688
Carg11354	Cucumber (Chinese Long) v3	carcucB0690
Carg11354	Watermelon (Charleston Gray)	carwcgB0635
Carg11354	Watermelon (97103) v2	carwmbB0680
Carg11354	Wax gourd	carwgoB0772