Carg11061 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11061
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein NUCLEAR FUSION DEFECTIVE 4-like
Location	Cucurbita_argyrosperma_scaffold_027 : 728925 .. 729766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGGTTCCTCTCATAATCTCTGTCGTTGCCTTCCTCCCAATCCTTCATCAGCCACCGGCTCAGCCGTCGTCTGCCGATGCCACCCGCAATGACTCCCTCACTTTCATCTGCTTATACATCACCGCAGTTATCACAGGCCTGTATCTAATCATCTTCAATTCCACACCTTCCAGCAAGTACGGGGCCCAAATTCTGTTGCCTGAAATTTGGAGTACTCACGGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCTACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCACAACAGGCCTCAAACCAATGAGGAGAGTATTATTTGTTTATAAACCCATGATCATTCCCTAAGTTAGCCAATGTGGGACTTTCATCATCTAACACCTCCCCTCGAATAAAGTGCGTCTCCCTTTAATCGAGGCTCAACTCCTTTGAAGTCTTAGTCATTTTTTACTGCCTTCGAGGAGGAACCTCCTTTTTCTTTTGGAGTCATTTGTTCGATGTTTGAGGATTTACCAATCTATTTGCACGACTAAGTTTAGGGCATGGCTCCGATACCATGTTAGGTTGAATGGCACTGTGACCTATATGGGCCACGACCTCATGTATTTATAGATGTGTATAATGAAGATTACATGGTAAATCATAGATTTGGTAACTAGTAAATCACTAGATTATCTTACTATGTACAGATATGATCTATTCTACGTTTAACATCCCCCCCTCTTCCCAATCTGGACGATGTACTACTAAGTTCAGAGTGCGCCTAAAATTGCTACAAGAAGGAGCTGGCGGTGACTTTGTCATGATATCGGCGAGCTGA

mRNA sequence

ATGGCATTGGTTCCTCTCATAATCTCTGTCGTTGCCTTCCTCCCAATCCTTCATCAGCCACCGGCTCAGCCGTCGTCTGCCGATGCCACCCGCAATGACTCCCTCACTTTCATCTGCTTATACATCACCGCAGTTATCACAGGCCTGTATCTAATCATCTTCAATTCCACACCTTCCAGCAAGTACGGGGCCCAAATTCTGTTGCCTGAAATTTGGAGTACTCACGATATGATCTATTCTACGTTTAACATCCCCCCCTCTTCCCAATCTGGACGATGTACTACTAAGTTCAGAGTGCGCCTAAAATTGCTACAAGAAGGAGCTGGCGGTGACTTTGTCATGATATCGGCGAGCTGA

Coding sequence (CDS)

ATGGCATTGGTTCCTCTCATAATCTCTGTCGTTGCCTTCCTCCCAATCCTTCATCAGCCACCGGCTCAGCCGTCGTCTGCCGATGCCACCCGCAATGACTCCCTCACTTTCATCTGCTTATACATCACCGCAGTTATCACAGGCCTGTATCTAATCATCTTCAATTCCACACCTTCCAGCAAGTACGGGGCCCAAATTCTGTTGCCTGAAATTTGGAGTACTCACGATATGATCTATTCTACGTTTAACATCCCCCCCTCTTCCCAATCTGGACGATGTACTACTAAGTTCAGAGTGCGCCTAAAATTGCTACAAGAAGGAGCTGGCGGTGACTTTGTCATGATATCGGCGAGCTGA

Protein sequence

MALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSKYGAQILLPEIWSTHDMIYSTFNIPPSSQSGRCTTKFRVRLKLLQEGAGGDFVMISAS

Homology

[Close]

BLAST of Carg11061 vs. NCBI nr
Match: XP_023000025.1 (protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 9.4e-28
Identity = 71/91 (78.02%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVVAF PILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLI FNSTPSSK
Sbjct: 193 ALVPLIISVVAFFPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLITFNSTPSSK 252

Query: 62  YGAQIL-------------LPEIWSTHDMIY 80
           YGAQIL             LP IWSTH  ++
Sbjct: 253 YGAQILLAGAFALLLVPLCLPGIWSTHKWLF 283

[Close]

BLAST of Carg11061 vs. NCBI nr
Match: XP_023000026.1 (protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 9.4e-28
Identity = 71/91 (78.02%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVVAF PILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLI FNSTPSSK
Sbjct: 193 ALVPLIISVVAFFPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLITFNSTPSSK 252

Query: 62  YGAQIL-------------LPEIWSTHDMIY 80
           YGAQIL             LP IWSTH  ++
Sbjct: 253 YGAQILLAGAFALLLVPLCLPGIWSTHKWLF 283

[Close]

BLAST of Carg11061 vs. NCBI nr
Match: XP_022964107.1 (protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 70/91 (76.92%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVV FLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLI FNSTPSSK
Sbjct: 193 ALVPLIISVVTFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLITFNSTPSSK 252

Query: 62  YGAQIL-------------LPEIWSTHDMIY 80
           YGAQ+L             LP IWSTH  ++
Sbjct: 253 YGAQLLLAGAFALLLVPLCLPGIWSTHKWLF 283

[Close]

BLAST of Carg11061 vs. NCBI nr
Match: XP_022964108.1 (protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 70/91 (76.92%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVV FLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLI FNSTPSSK
Sbjct: 193 ALVPLIISVVTFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLITFNSTPSSK 252

Query: 62  YGAQIL-------------LPEIWSTHDMIY 80
           YGAQ+L             LP IWSTH  ++
Sbjct: 253 YGAQLLLAGAFALLLVPLCLPGIWSTHKWLF 283

[Close]

BLAST of Carg11061 vs. NCBI nr
Match: XP_023514466.1 (protein NUCLEAR FUSION DEFECTIVE 4-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 68/91 (74.73%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVV FLPILHQPPAQPSS+DATRNDS TFICLYITAVITGLYLI FNSTPSSK
Sbjct: 18  ALVPLIISVVTFLPILHQPPAQPSSSDATRNDSHTFICLYITAVITGLYLITFNSTPSSK 77

Query: 62  YGAQIL-------------LPEIWSTHDMIY 80
           YGAQ+L             LP IWSTH  ++
Sbjct: 78  YGAQLLLAGAFALLLVPLCLPGIWSTHKWLF 108

[Close]

BLAST of Carg11061 vs. TAIR10
Match: AT5G45275.1 (Major facilitator superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPL +S  A +PIL QPP +P   D  R DSL F+ L I AV+ G+YL++F S  S  
Sbjct: 172 ALVPLFVSFAALIPILRQPPLEPLPPDGVRRDSLMFLLLNILAVLNGVYLLLFRSKTSDV 231

Query: 62  YGAQIL 68
             A++L
Sbjct: 232 TSARLL 237

[Close]

BLAST of Carg11061 vs. TAIR10
Match: AT4G19450.1 (Major facilitator superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           AL+PLI+S  A +PIL QPP +P   D  R DSL F+ L I A + G+YL++F S  S  
Sbjct: 172 ALIPLIVSFTAIIPILRQPPFEPLPPDGVRRDSLMFLLLNILAALNGVYLLLFGSNSSDL 231

Query: 62  YGAQIL 68
             A++L
Sbjct: 232 TSARLL 237

[Close]

BLAST of Carg11061 vs. TrEMBL
Match: tr|A0A1S3CCZ1|A0A1S3CCZ1_CUCME (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103499000 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVVA LP+LHQP  QPSSADA R+DSL FICLYITAVITGLYLI FNS PS+K
Sbjct: 193 ALVPLIISVVALLPMLHQPQVQPSSADAIRHDSLIFICLYITAVITGLYLITFNSMPSNK 252

Query: 62  YGAQILL 69
           YG+QILL
Sbjct: 253 YGSQILL 259

[Close]

BLAST of Carg11061 vs. TrEMBL
Match: tr|A0A0A0KCZ5|A0A0A0KCZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078620 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPLIISVVA LP+LH+PP QPSS DA R+DSL FICLY+TA+ITGLYLI FNS PS+K
Sbjct: 216 ALVPLIISVVALLPMLHKPPVQPSSDDAIRHDSLIFICLYMTAIITGLYLITFNSMPSNK 275

Query: 62  YGAQILL 69
           YG+QILL
Sbjct: 276 YGSQILL 282

[Close]

BLAST of Carg11061 vs. TrEMBL
Match: tr|A0A251QE65|A0A251QE65_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G104800 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPL  S VA +P+L QPP Q   ADATR DS+ F+CL I AVITGLYL++ NS  S  
Sbjct: 172 ALVPLFTSSVALIPVLRQPPIQSLPADATRRDSIIFLCLNILAVITGLYLLLLNSLSSHV 231

Query: 62  YGAQILL 69
             A++LL
Sbjct: 232 SKARMLL 238

[Close]

BLAST of Carg11061 vs. TrEMBL
Match: tr|M5X3K1|M5X3K1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa003313mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPL  S VA +P+L QPP Q   ADATR DS+ F+CL I AVITGLYL++ NS  S  
Sbjct: 172 ALVPLFTSSVALIPVLRQPPIQSLPADATRRDSIIFLCLNILAVITGLYLLLLNSLSSHV 231

Query: 62  YGAQILL 69
             A++LL
Sbjct: 232 SKARMLL 238

[Close]

BLAST of Carg11061 vs. TrEMBL
Match: tr|A0A2P5C6P1|A0A2P5C6P1_PARAD (Major facilitator OS=Parasponia andersonii OX=3476 GN=PanMFS22 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 2   ALVPLIISVVAFLPILHQPPAQPSSADATRNDSLTFICLYITAVITGLYLIIFNSTPSSK 61
           ALVPL+ SV A +PIL QPP QP  A   R DSL F CLY+ A +TGLYL+  N   S+ 
Sbjct: 172 ALVPLLTSVAALVPILRQPPPQPEPASVVRRDSLIFGCLYVLAFVTGLYLLFLNFLSSNI 231

Query: 62  YGAQILL 69
             A+ILL
Sbjct: 232 LRARILL 238

The following BLAST results are available for this feature:

BLAST of Carg11061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000025.1	9.4e-28	78.02	protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita maxima]	[more]
XP_023000026.1	9.4e-28	78.02	protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita maxima]	[more]
XP_022964107.1	1.6e-27	76.92	protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022964108.1	1.6e-27	76.92	protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita moschata]	[more]
XP_023514466.1	2.3e-26	74.73	protein NUCLEAR FUSION DEFECTIVE 4-like, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11061 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45275.1	9.7e-11	48.48	Major facilitator superfamily protein	[more]
AT4G19450.1	1.3e-10	46.97	Major facilitator superfamily protein	[more]

BLAST of Carg11061 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11061 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCZ1\|A0A1S3CCZ1_CUCME	9.6e-21	83.58	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103499000 ...	[more]
tr\|A0A0A0KCZ5\|A0A0A0KCZ5_CUCSA	4.8e-20	79.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078620 PE=4 SV=1	[more]
tr\|A0A251QE65\|A0A251QE65_PRUPE	4.5e-10	58.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G104800 PE=4 SV=1	[more]
tr\|M5X3K1\|M5X3K1_PRUPE	4.5e-10	58.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa003313mg PE=4 SV=1	[more]
tr\|A0A2P5C6P1\|A0A2P5C6P1_PARAD	2.2e-09	55.22	Major facilitator OS=Parasponia andersonii OX=3476 GN=PanMFS22 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010658	Nodulin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11061-RA	Carg11061-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 2..55 e-value: 2.3E-6 score: 27.2
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 2..68
None	No IPR available	PANTHER	PTHR21576:SF77	SUBFAMILY NOT NAMED	coord: 2..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11061	Wax gourd	carwgoB1264
Carg11061	Wax gourd	carwgoB1266
Carg11061	Silver-seed gourd	carcarB267
Carg11061	Silver-seed gourd	carcarB269
Carg11061	Silver-seed gourd	carcarB550
Carg11061	Silver-seed gourd	carcarB649
Carg11061	Cucumber (Gy14) v2	carcgybB1057
Carg11061	Cucumber (Gy14) v2	carcgybB1059
Carg11061	Cucumber (Gy14) v2	carcgybB1060
Carg11061	Cucumber (Gy14) v1	carcgyB1190
Carg11061	Cucumber (Gy14) v1	carcgyB1191
Carg11061	Cucumber (Gy14) v1	carcgyB1194
Carg11061	Cucurbita maxima (Rimu)	carcmaB1485
Carg11061	Cucurbita maxima (Rimu)	carcmaB1487
Carg11061	Cucurbita maxima (Rimu)	carcmaB1493
Carg11061	Cucurbita maxima (Rimu)	carcmaB1494
Carg11061	Cucurbita maxima (Rimu)	carcmaB1495
Carg11061	Cucurbita moschata (Rifu)	carcmoB1443
Carg11061	Cucurbita moschata (Rifu)	carcmoB1444
Carg11061	Cucurbita moschata (Rifu)	carcmoB1446
Carg11061	Cucurbita moschata (Rifu)	carcmoB1448
Carg11061	Cucurbita moschata (Rifu)	carcmoB1451
Carg11061	Cucurbita moschata (Rifu)	carcmoB1452
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1499
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1501
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1503
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1504
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1505
Carg11061	Cucurbita pepo (Zucchini)	carcpeB1507
Carg11061	Wild cucumber (PI 183967)	carcpiB1113
Carg11061	Wild cucumber (PI 183967)	carcpiB1115
Carg11061	Wild cucumber (PI 183967)	carcpiB1117
Carg11061	Cucumber (Chinese Long) v2	carcuB1091
Carg11061	Cucumber (Chinese Long) v2	carcuB1093
Carg11061	Cucumber (Chinese Long) v2	carcuB1095
Carg11061	Cucumber (Chinese Long) v3	carcucB1124
Carg11061	Cucumber (Chinese Long) v3	carcucB1126
Carg11061	Cucumber (Chinese Long) v3	carcucB1128
Carg11061	Bottle gourd (USVL1VR-Ls)	carlsiB982
Carg11061	Bottle gourd (USVL1VR-Ls)	carlsiB983
Carg11061	Bottle gourd (USVL1VR-Ls)	carlsiB985
Carg11061	Melon (DHL92) v3.5.1	carmeB1044
Carg11061	Melon (DHL92) v3.5.1	carmeB1049
Carg11061	Melon (DHL92) v3.5.1	carmeB1050
Carg11061	Melon (DHL92) v3.6.1	carmedB1058
Carg11061	Melon (DHL92) v3.6.1	carmedB1064
Carg11061	Watermelon (Charleston Gray)	carwcgB1044
Carg11061	Watermelon (Charleston Gray)	carwcgB1045
Carg11061	Watermelon (Charleston Gray)	carwcgB1047
Carg11061	Watermelon (97103) v1	carwmB1074
Carg11061	Watermelon (97103) v1	carwmB1075
Carg11061	Watermelon (97103) v1	carwmB1078
Carg11061	Watermelon (97103) v2	carwmbB1130
Carg11061	Watermelon (97103) v2	carwmbB1131
Carg11061	Watermelon (97103) v2	carwmbB1134