Carg10905 (gene) Silver-seed gourd

NameCarg10905
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein L31
LocationCucurbita_argyrosperma_scaffold_034 : 807723 .. 808875 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGGTTGTCGATTGAGAATGGAAACTTGTGGGTTTTGATTCAAATGCAGCTTTACTGAGATAGTTCTTTTTCTGGAAACTTTAAGTTTAGGAACTAAACTATTTTCTCTAGAAGCTAAAGTACTAATTATGATTTCAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTTGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTTAAGTTCCCTTCTATTTAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAGAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATTGAATCTGCATTCCTATCTTCTGTTCAATAAATGTGATCATTTTCCACCTTATTTATCTAATTGTGCTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTAAAAGAAAGAAGATAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGTAGTTTTGTACTATTTAAGATATGAGAAAGAAACTAAAAAAATTATGCCTCGTAGAGAGAAGTGGCCACAATGTGGCGATTATTGTGAGATCCCACATTAGTTGGAGTGTGGAGCGAAACATTTTTTATAAGGGTGTGGAAACCTCTACTTAGCAA

mRNA sequence

ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTTGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTTAAGTTCCCTTCTATTTAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAGAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATTGAATCTGCATTCCTATCTTCTGTTCAATAAATGTGATCATTTTCCACCTTATTTATCTAATTGTGCTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTAAAAGAAAGAAGATAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGTAGTTTTGTACTATTTAAGATATGAGAAAGAAACTAAAAAAATTATGCCTCGTAGAGAGAAGTGGCCACAATGTGGCGATTATTGTGAGATCCCACATTAGTTGGAGTGTGGAGCGAAACATTTTTTATAAGGGTGTGGAAACCTCTACTTAGCAA

Coding sequence (CDS)

ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGA

Protein sequence

MWLSLPNFYSLGMMNIEHYTAHQMFDEIPLVSGIAALYMFIVRSFPTYKQDKIYTMKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVENDESVEKAEK
BLAST of Carg10905 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 6.9e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

BLAST of Carg10905 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLAESIGQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

BLAST of Carg10905 vs. NCBI nr
Match: XP_022999184.1 (uncharacterized protein LOC111493644 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY  RARRQLAES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

BLAST of Carg10905 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEK 127
            I EN E+ EK
Sbjct: 61  GIAENVENAEK 71

BLAST of Carg10905 vs. NCBI nr
Match: XP_010651375.1 (PREDICTED: uncharacterized protein LOC100853477 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMT+IH VGKVYHLRARRQ+A+S+GQIAKFKRRYE+
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 116 DIVENDE 123
              EN+E
Sbjct: 61  KNEENEE 67

BLAST of Carg10905 vs. TAIR10
Match: AT5G55125.1 (Ribosomal protein L31)

HSP 1 Score: 110.5 bits (275), Expect = 7.6e-25
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYH  A+RQ+A+SIGQIAKFKRR+  
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 116 DIVENDESVEKAEK 130
               N++  E AE+
Sbjct: 61  ----NEQEAEAAEE 68

BLAST of Carg10905 vs. TrEMBL
Match: tr|F6GUK5|F6GUK5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMT+IH VGKVYHLRARRQ+A+S+GQIAKFKRRYE+
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 116 DIVENDE 123
              EN+E
Sbjct: 61  KNEENEE 67

BLAST of Carg10905 vs. TrEMBL
Match: tr|A0A1S4BHW3|A0A1S4BHW3_TOBAC (uncharacterized protein LOC107808428 OS=Nicotiana tabacum OX=4097 GN=LOC107808428 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKG+HPQMQWISYVTQSGRLMHVMMTKIH  GKVYH+RARRQ+A+SIGQIAKFKRRY +
Sbjct: 1   MKKGIHPQMQWISYVTQSGRLMHVMMTKIHQTGKVYHIRARRQMAQSIGQIAKFKRRYGE 60

Query: 116 DIVENDESVEKAEK 130
              + +E VEKAEK
Sbjct: 61  ---KEEEEVEKAEK 71

BLAST of Carg10905 vs. TrEMBL
Match: tr|B9STZ5|B9STZ5_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0753040 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKG+HPQMQWISYVTQSGRLMH+MMTKIHHVGKVYH RARRQLAES+GQ+AKFKRRY +
Sbjct: 1   MKKGIHPQMQWISYVTQSGRLMHIMMTKIHHVGKVYHFRARRQLAESLGQVAKFKRRYGQ 60

Query: 116 DIVEN 121
           +  E+
Sbjct: 61  EDAED 65

BLAST of Carg10905 vs. TrEMBL
Match: tr|A0A2I4ESM8|A0A2I4ESM8_9ROSI (uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRY-E 115
           MKKGLHPQ+QWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AESIGQ+AKFKRRY E
Sbjct: 1   MKKGLHPQLQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESIGQVAKFKRRYEE 60

Query: 116 KDIVENDES 124
           K   E++E+
Sbjct: 61  KGNAEDNEN 69

BLAST of Carg10905 vs. TrEMBL
Match: tr|A0A067F7J7|A0A067F7J7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.6e-23
Identity = 56/68 (82.35%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQ+A+SIGQ+AKF+RRYE+
Sbjct: 4   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQ 63

Query: 116 DI-VENDE 123
            +  EN+E
Sbjct: 64  QLDAENNE 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023547264.16.9e-3298.65uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo][more]
XP_022946219.11.5e-3198.65uncharacterized protein LOC111450371 [Cucurbita moschata][more]
XP_022999184.11.7e-3095.95uncharacterized protein LOC111493644 [Cucurbita maxima][more]
XP_022143125.11.9e-2687.32uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha... [more]
XP_010651375.12.0e-2385.07PREDICTED: uncharacterized protein LOC100853477 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT5G55125.17.6e-2574.32Ribosomal protein L31[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|F6GUK5|F6GUK5_VITVI1.3e-2385.07Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=... [more]
tr|A0A1S4BHW3|A0A1S4BHW3_TOBAC3.9e-2379.73uncharacterized protein LOC107808428 OS=Nicotiana tabacum OX=4097 GN=LOC10780842... [more]
tr|B9STZ5|B9STZ5_RICCO3.9e-2383.08Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0753040 PE=4 SV=1[more]
tr|A0A2I4ESM8|A0A2I4ESM8_9ROSI5.1e-2382.61uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 P... [more]
tr|A0A067F7J7|A0A067F7J7_CITSI8.6e-2382.35Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10905-RACarg10905-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..129
NoneNo IPR availablePANTHERPTHR37264FAMILY NOT NAMEDcoord: 56..122

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg10905Wax gourdcarwgoB0682
Carg10905Wax gourdcarwgoB0683
Carg10905Wax gourdcarwgoB0685
Carg10905Silver-seed gourdcarcarB044
Carg10905Silver-seed gourdcarcarB152
Carg10905Silver-seed gourdcarcarB296
Carg10905Silver-seed gourdcarcarB529
Carg10905Silver-seed gourdcarcarB530
Carg10905Cucumber (Gy14) v2carcgybB0570
Carg10905Cucumber (Gy14) v2carcgybB0574
Carg10905Cucumber (Gy14) v2carcgybB0575
Carg10905Cucumber (Gy14) v1carcgyB0648
Carg10905Cucurbita maxima (Rimu)carcmaB0793
Carg10905Cucurbita maxima (Rimu)carcmaB0795
Carg10905Cucurbita maxima (Rimu)carcmaB0797
Carg10905Cucurbita maxima (Rimu)carcmaB0799
Carg10905Cucurbita maxima (Rimu)carcmaB0800
Carg10905Cucurbita moschata (Rifu)carcmoB0772
Carg10905Cucurbita moschata (Rifu)carcmoB0774
Carg10905Cucurbita moschata (Rifu)carcmoB0776
Carg10905Cucurbita moschata (Rifu)carcmoB0777
Carg10905Cucurbita moschata (Rifu)carcmoB0778
Carg10905Cucurbita moschata (Rifu)carcmoB0779
Carg10905Cucurbita pepo (Zucchini)carcpeB0811
Carg10905Cucurbita pepo (Zucchini)carcpeB0812
Carg10905Cucurbita pepo (Zucchini)carcpeB0813
Carg10905Cucurbita pepo (Zucchini)carcpeB0814
Carg10905Cucurbita pepo (Zucchini)carcpeB0815
Carg10905Wild cucumber (PI 183967)carcpiB0600
Carg10905Wild cucumber (PI 183967)carcpiB0605
Carg10905Wild cucumber (PI 183967)carcpiB0606
Carg10905Cucumber (Chinese Long) v2carcuB0595
Carg10905Cucumber (Chinese Long) v2carcuB0600
Carg10905Cucumber (Chinese Long) v2carcuB0601
Carg10905Cucumber (Chinese Long) v3carcucB0602
Carg10905Cucumber (Chinese Long) v3carcucB0607
Carg10905Cucumber (Chinese Long) v3carcucB0608
Carg10905Bottle gourd (USVL1VR-Ls)carlsiB516
Carg10905Bottle gourd (USVL1VR-Ls)carlsiB517
Carg10905Bottle gourd (USVL1VR-Ls)carlsiB518
Carg10905Bottle gourd (USVL1VR-Ls)carlsiB520
Carg10905Melon (DHL92) v3.5.1carmeB0571
Carg10905Melon (DHL92) v3.5.1carmeB0572
Carg10905Melon (DHL92) v3.6.1carmedB0578
Carg10905Melon (DHL92) v3.6.1carmedB0579
Carg10905Watermelon (Charleston Gray)carwcgB0552
Carg10905Watermelon (Charleston Gray)carwcgB0553
Carg10905Watermelon (Charleston Gray)carwcgB0556
Carg10905Watermelon (Charleston Gray)carwcgB0557
Carg10905Watermelon (Charleston Gray)carwcgB0559
Carg10905Watermelon (97103) v1carwmB0564
Carg10905Watermelon (97103) v1carwmB0566
Carg10905Watermelon (97103) v1carwmB0567
Carg10905Watermelon (97103) v1carwmB0570
Carg10905Watermelon (97103) v2carwmbB0594
Carg10905Watermelon (97103) v2carwmbB0595
Carg10905Watermelon (97103) v2carwmbB0597
Carg10905Watermelon (97103) v2carwmbB0598
Carg10905Watermelon (97103) v2carwmbB0599