Carg10772 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10772
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_034 : 113876 .. 115140 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAAGCAAGGCCGTTTGGGAAAAGTGGAAGCCCAGAGCGGGGGAATGGCTGGCTTGTCAATTTATCAAACAGGTAAACTGCAACACCCAACAACAACTCTATTCTATTCTATTCTATGTTTCATACAAAATCAAATTCTGTCTCGAACCTCAATCATTGAAAAGGCTTACCAGCTCACGTTAGCAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGGTGTGAGGTGAACCCCACCTACGTTGTCACGAGCCCACTCTCACCACCGCTAAATAAACAAATAAATAAAACTCCCCTGTTCCGACGCTTCTACAGTTCGGAAATCGCCTCTGTAGAACGACGGGGATAGCCATTCCATGGAAACTGGGGTTCTGTTTCTTTTCTTTTTCTCAAGTTGGAGGTGTGCGTGGTTTTTTAGGTTTGGTTTCTTTGTTGATTCCTGAGTAACAAAGGAGTTGTTAGGCATGCATTATAACGTAGGACAAGGAGGAGTATAAAAGGACACAAATTTCTCTATTTTCAAGACCATCTTTCTGAACTGCACTCATGCTTGGGACCCTTATAACCTCTTCCTTTACTTAACTCAAAAAGTTTCAATGCTTATTTTGAAGGAATGAGGAAGGTAAACATTAGCTGGTGTTTGTGTATCCAATGATTGTGGCATGCCCCTTTTCCCTCTTCTTGTTCGAGCTAGCAATTTCCACAAGAAAGCTGGGCAAAGGAGAGTGGAAGAACATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTGCCCAGAAAACGAAACGAAGAACAAAACGTATAGGAAGAGTAGCAATGTCGGGAAAGGCTTTATTTCTGCTGATTTGCTGTGAGCACAGAGTCCGAATCTGTTTTAATGATAAAAAAAAAAAAAAAAAATGAGTTGCTTGGGTTGAAAACTTTGTGAGTGAATGTGTTTGTGTTTGAAGTGAAGTTGAGTGTAGAGTATGTGTTTGAATATCTCTGTCTCTCTCCTACGTAGTGCTCACGTGGGGTCTGAGATGGTTGCTTCCATCGTGCTTTTCGCTTCTTTCTTGCTCTCTTGCTTTCTTTGCTCTGCAAT

mRNA sequence

ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAAGCAAGGCCGTTTGGGAAAAGTGGAAGCCCAGAGCGGGGGAATGGCTGGCTTGTCAATTTATCAAACAGGCTTACCAGCTCACGTTAGCAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGGTGTGAGGAATGAGGAAGGTAAACATTAGCTGGTGTTTGTGTATCCAATGATTGTGGCATGCCCCTTTTCCCTCTTCTTGTTCGAGCTAGCAATTTCCACAAGAAAGCTGGGCAAAGGAGAGTGGAAGAACATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTGCCCAGAAAACGAAACGAAGAACAAAACGTATAGGAAGAGTAGCAATGTCGGGAAAGGCTTTATTTCTGCTGATTTGCTGTGAGCACAGAGTCCGAATCTGTTTTAATGATAAAAAAAAAAAAAAAAAATGAGTTGCTTGGGTTGAAAACTTTGTGAGTGAATGTGTTTGTGTTTGAAGTGAAGTTGAGTGTAGAGTATGTGTTTGAATATCTCTGTCTCTCTCCTACGTAGTGCTCACGTGGGGTCTGAGATGGTTGCTTCCATCGTGCTTTTCGCTTCTTTCTTGCTCTCTTGCTTTCTTTGCTCTGCAAT

Coding sequence (CDS)

ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAAGCAAGGCCGTTTGGGAAAAGTGGAAGCCCAGAGCGGGGGAATGGCTGGCTTGTCAATTTATCAAACAGGCTTACCAGCTCACGTTAGCAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGGTGTGAGGAATGA

Protein sequence

MEVEDPNEWVATVGRPKLVEAAKQSKAVWEKWKPRAGEWLACQFIKQAYQLTLAEATSGTVPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAGCEE

Homology

[Close]

BLAST of Carg10772 vs. NCBI nr
Match: XP_022946453.1 (uncharacterized protein LOC111450506 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEVEDPNEWVATVGRPKLVEAAKQSK 27
          MEVEDPNEWVATVGRPKLVEAAKQ +
Sbjct: 1  MEVEDPNEWVATVGRPKLVEAAKQGR 26

The following BLAST results are available for this feature:

BLAST of Carg10772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946453.1	6.4e-04	92.31	uncharacterized protein LOC111450506 [Cucurbita moschata]	[more]

BLAST of Carg10772 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg10772 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10772 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10772-RA	Carg10772-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10772	CmaCh05G014300	Cucurbita maxima (Rimu)	carcmaB0802
Carg10772	CmoCh05G014220	Cucurbita moschata (Rifu)	carcmoB0779

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10772	Silver-seed gourd	carcarB233
Carg10772	Silver-seed gourd	carcarB528
Carg10772	Cucumber (Gy14) v2	carcgybB0573
Carg10772	Cucumber (Gy14) v1	carcgyB0644
Carg10772	Cucurbita maxima (Rimu)	carcmaB0797
Carg10772	Cucurbita moschata (Rifu)	carcmoB0776
Carg10772	Cucurbita pepo (Zucchini)	carcpeB0809
Carg10772	Cucurbita pepo (Zucchini)	carcpeB0817
Carg10772	Wild cucumber (PI 183967)	carcpiB0603
Carg10772	Cucumber (Chinese Long) v2	carcuB0598
Carg10772	Cucumber (Chinese Long) v3	carcucB0605
Carg10772	Bottle gourd (USVL1VR-Ls)	carlsiB514
Carg10772	Melon (DHL92) v3.5.1	carmeB0577
Carg10772	Melon (DHL92) v3.6.1	carmedB0584
Carg10772	Watermelon (Charleston Gray)	carwcgB0553
Carg10772	Watermelon (97103) v1	carwmB0569
Carg10772	Watermelon (97103) v2	carwmbB0591
Carg10772	Wax gourd	carwgoB0675