Carg10563 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10563
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding 39
Location	Cucurbita_argyrosperma_scaffold_098 : 861252 .. 868168 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAGAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGACGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGACATAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGGTAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGTAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGTAATTGTTCATTTGTGCGCTCTTTGTTGAACTGTGATCTTGAAAGCTTACAATTGACTGTTGGGTGTTGCTCGTATACGTTTATTTTCCGCTTGTTTCTCGTTGCTATTCTTAACAATTATGGGGCGGTGTGTTTGAACGTGAAGCAATTTTTTTCGTGGAAAATGTCCAAAGGATAGAAACTTCCCATATGAGGCGAAAACAATCATCCAAGCAAATAGAATGGAGAGAATATCTGTAAAAAATTACAAGAGCCGAAAGATCTACCAAATATTTGAGCATTGAGTATAAGACCGAGCAACTTCGAGAAGAACAAGTCAAGAAGCCAGCTAGCCAAAACAACAAAAACCACTTCCACCAATCACCAAACACTGCTCCAGGCTACAGGCTAATAAGATATCAACTGGGAAACTGCCAAAACTTAATAGAAACTCCTTTGTGAAACAAGCTATCAATTCTCTGATCAAAAGCTCTTCAAACACACCAAACTAATCACACTAATGCTTCAACCAAGCACACAACCATAAATGAATTAATCTGGAATAAGCCATACTTGATTGGTGATCTTTAGCTTTGAACTCCCAAACATCTTGAAGTCCATGAGATGATCTTCATGGCTATGGACGTCAGCCCACATCGTCAGTTGAGAAAAAGTGCTCAAGGCATAGGACAAAGTTTATGGTAGATATATTTTTGGTTACTGCTTACTAAGCTTGTCTTTAAATTTGAATCTATTGTATGAAATTGGTTTCTCATATAAATTAAAATAAAATTGTTGCATTAAACAATATGGCATTGTATCGAGTTAGAAACTTAGATTAGAATACATTTATGCTCTAGGTAGTGAAGTGTGTAAACATTAGCGCTAATTCCCAGGCCTTTGGTTTGGCATCATTGCTAAACCAGATATTCCGTGGAAATTAGGACCTCTTTCAAGCCTGGTAATGACAGTCGGTTATTTATTTATTTTAATTTAGAAACTTAGATTAGAATACATTTATGCTCTAGGTAGTGAAGTGTGTAAACATTAGCGCTAATTCCCAGGCCTTTGGTTTGGCATCATTGCTAAACCAGATATTCCGTGGAAATTAGGACCTCTTTCAAGCCTGGTAATGACAGTCGGTTATTTATTTATTTTAATTTGTTGATTTGTTTGAAAAGAAAAAACACTTGCGTTTCATTGACAAGTGCAAAAGTTTTCAAGACATTTACTGAGTTGGTATTTTGCAACAGAAAGGGTAGTACAACAGCCAATGATAACCACCACATGGTGTGGAAATCCTAGAAGCCCATCATTTAATCAATGTATTTATTTTTCATATACTTAGAGGAATGAAGACATCAAATGAAATCATAAAAGTGTAGACTTGTTCTCCAAGTTCTTTTTTATTTTTATTATTCATTCTCTTTTCTTACTGCATTCTATAGTCTAAATTACTGATATACCGCGATGAAGGTTTTATCAGGAAGTTCACATTCATTCAAAAAAGATTGTGCCTTCACATAATCACTGTCCCCTAGTAATATAGAGTGGAAAGAAGAAATCTAAGTCGTTCTAAATTTCTTAAACATTATTTTAATTTAAATTACTGTGTTTTCCTTCAATTTTTCCCTGATGTTTGTGTGTGCAAATGGCAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGGTTGATAGTTTTCCTTGTTTTTCCTTACCTTTCATGTTCTCTTTATATTTTGCTTATCATTTTTATTATCCTCTATATTCTTTGTGCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTATTTGAAATGTGTTACTCAAGTGAAGCACATAAGTGTATATTTTTTATTTAGCAAAAAATTAACAATTAAAGGTCTTAGCAGTCATACGTGCATCTATATTATTTCCATGAGCCATGTCCCTTGTACTTGTTCACCTCTGTAGCATGTATTAGATAGAGGAATTTTTGTTGCAATGTTATTGCTACAAATGTTATGATGGCATAGATATTGAGATAGATTTGCTTCATATTGCAGTTACTGTTCCTCTGCCTTCAGTTTCGAAACTATAATCAATTTCTTCTATCTCAACATTCTGTTTATATGGGGTGAGTGAAAATGTATATGAGTTCTGTCGTGATCTCATTGATGGCTGAATGATGCTTTGCTTCGAGTGTAAAGAACGGAAACCTTTATTGCTTTTCTTTTTGCCGGCTTCCTATAACCTTCTCTCATTGTTTTTCTATTTCAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTGGTCTTGGGATGAACAAGTTTTATATTGTATGCTTGTGATCTCGTTAATATGGTTATTAATATAGTAGTTTTGAAGTATCAAATTTAACTGTATTTTTAAATGAACTAGCAATGCGATAATGATGAGGGATGGTGGGAATACTATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTTTCCTTTGTTGTTTTCCCCATCGTACTCCTAATTCTGCTCCTCTATGTTTTTGTGCAGATAAGAAACAGTCCTAACTCCTATGACTCTGTTATCTCTGGTCTTGGTTTTAGATTCATTTCTTTCTACTATGTAATTTCTTGGTTCAAGTTAACTTTCAAACAGTGATTTGTTACACTTTATTAAAATTAACACGTTTTGTCGTGTATCATCTTCTCATTGTTTTTTTTCCTTGGTAAGTATGCAGAAAGGCTCTGGCTTGCGGTTGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGCGGTCTTTGATTAAAAAAAAAAAGAAAAAAAATTAGAGAAGGTCTTCTATGGCATCTTTCCCATAGTACTTACTGTGCAATGAATTTTTATTGAGAGGACTGTCCATCGGTTATCAATAATGATTTTTTTGGGGATTAATTTGTATATGCTAATTGACAAAATTAGGAATGGCGACAAATAGTCACCATAGGACCCCCCATCTAGTTTAAGCTGGTCATCTGCTATTTGGTTTTGTGTTGCCTCTTCATTGATGAACTGACTTAACTATTTAATTAGTCCTAGAAAGTCTGAGGTCTCTGTGTAGTTTATTTATCTTATGCTTTGTAAATTTTGTTTCTTATTTTTGCTGTCTCATGTTCTAATAATTTTACTTTGAGGTATTGATTAAACTGCAGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGGTACTTGGACCAATAAATCTATGAAATTTTATCTCAAGACATTCATAATTGATTTCCTCTCATACGCAGTTATTTTTTCTACAAGTGACAAGTGTAGACTGACATTGAACAAGAAACAAATTTATGCATCAAAATCATTTCTGATAGTATATGCAGTGAACATGGTTTCCCTATTGTAAAATCAGTCTATGAATTATAGGCTCTGGCAGAGAATTTAGATTCGGTTTCTACGGATTTAAAATAATCATAGCATATAACCTTTGGACTATAATAGTTGTCCTCCTTCTTTCAGATATATTTCAAAGGAAATTACAACCTATCTTGCCAATGACTAGTTTGAGAGAGTCATCCCTCTCCACACTACTGTCAATTAACACACAAAATACCCATTTACCCTTGTTTGAGAGGGTCATCCATTTCTCCACACTAACTGACCTCGGGAGTTATTACTTACCTATTCAGAATATTCAAACAAGGAAACTGGCTATAACCGATTCTTCTTAATGTTAGAAACAGGAAACAGATACATTTCAGTTTTTCCCTCGAATAAACCTTCTGGAATGAAGGTCTAACAGAGCATCACTTCTTTTCTGACTAGATTTTTGAAGCTTTTGGTCCCGTGGAGCTTGTGCAACTACCTCTCGACCTTGAATCGGGTCACTGCAAGGGTTTTGGATTTGTTCAAGTGGGTAATCATTTGTTATCAATTTTTGCGAGTTTTTGATGTACTCAGTCCATAGCTCATAAAGGTATGTCTTAATTTTTTAACTTGTTTCCAGTTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTAGTTTGCTGCTAGAACCTATCAGATTTAAACTTGTGTTTAATACTAATATATCTGTTTGTTATTCTGGCTTCTCTGAAGAATGATGACATCCTGGGTTCTGTGTGTTTTAAATAATACTGTTTGTGCAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGTTGGTGTTTAGTTTTCTTTTATGACACCTTGCTTCAGATTTTTCTATTCCCCTCACATGCATAAAAGAAAAAAGGAGAACAAAAAAAAAAGAAAAAAAAAAAGAAATGAAGATGAGACTATTATCATCAGATTATGATCATGTGTCATATCATTTATTTGATGACCGTTGAACTGTGCTGATTGGATACTTCTTCACTTTGATTACTTCCAACTAGAGCACTTTTTGGTTACTAATTATAACGACTGATTGCAGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGGTTTGCCTCCTTTTAGTGTGATTAAGAAGCGAGATGTCTTATTTTCCCTCTTTAGTAGTTAGTACTTCCATATTCTTGAATGGACGTATTTTTATTCTCTAAGAAAGAAAGATTGGATCAATGCAAGTCAACTGCTTCATGGTTACTTCATGGTTTCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCAGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGTCCTAGTGAATGCCTACTACTGAAAAACATGTTTGATCCATCGACGGAGGTACTGAATAATTGAATGTTCTGTTTCTCATTTTTTGGGGTGGATTATTTATGATATGAATCATCTTGCAGACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAGTGAGTCTTTTTTTCTTGTCCCCATAATCATATTAATTACTTCAGCTCATATGAAACTTCATCTATTCATTTTTTATTCAAATTTATATTTCTGCTTTCTTTTTCAATCGGTCATATTTATTGCTCTAAAATACAGGATGTCCCTGTTCATATCTTTCTTGAATTTGTTTTGTGCCGTGTTGGGGCATTAACTTGGATCTTTGATCCTCATTTGCAGATACTTCCGGATTAGGGATGGAAAAAAATTACTAATGCCTCCATGGATGGGAGAATCTTATTTTCCTTATTTAATTTTAGGAAGGCTATTGAAATGGCTATCCTACGCTGACCACTAGCCCTGAATTATTATAAACTTAAAAATATACTTGACTGACAACATTTTCTATTATATATATACACACACTGGAAACTTAATCTTCAACAGAATATCATTTCATCGTTATGTCCTAGAATTGAACTTTTGAACATTGCGTTATTATGTGATTAAATAGATGTTTGTTTGTGTAGAATGTCATTTCATCGTTTTATTTTTCTTTTATGATTTTATATTTTGCAGAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTCTTGTTCATGGTTTGTTTTTAACTCAAAAGCTTCAATTAGCTCGTAATAAATTTCTCAATTCTTTTAGACTGGTATTAGGAAGAAGAAATTGTGTCGGGGAGCTTGATTTTTAGGGCTTTTGGAACTCATTTCCTTTGTGTTAGATTTCTCTGTTTCAGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGTTTATGAAGCCAAGTTTATAGGAGCTTGA

mRNA sequence

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAGAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGACGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGACATAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGGTAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGTAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGCAATGCGATAATGATGAGGGATGGTGGGAATACTATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGATTTTTGAAGCTTTTGGTCCCGTGGAGCTTGTGCAACTACCTCTCGACCTTGAATCGGGTCACTGCAAGGGTTTTGGATTTGTTCAATTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCAGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGTCCTAGTGAATGCCTACTACTGAAAAACATGTTTGATCCATCGACGGAGACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTCTTGTTCATGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGTTTATGAAGCCAAGTTTATAGGAGCTTGA

Coding sequence (CDS)

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAGAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGACGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGACATAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGGTAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGTAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGCAATGCGATAATGATGAGGGATGGTGGGAATACTATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGATTTTTGAAGCTTTTGGTCCCGTGGAGCTTGTGCAACTACCTCTCGACCTTGAATCGGGTCACTGCAAGGGTTTTGGATTTGTTCAATTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCAGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGTCCTAGTGAATGCCTACTACTGAAAAACATGTTTGATCCATCGACGGAGACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTCTTGTTCATGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGTTTATGAAGCCAAGTTTATAGGAGCTTGA

Protein sequence

MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRSKSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREERHKEKEKERERDKGRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERREREKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKFIGA

Homology

[Close]

BLAST of Carg10563 vs. NCBI nr
Match: XP_023543913.1 (RNA-binding protein 39-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 725.3 bits (1871), Expect = 1.8e-205
Identity = 382/424 (90.09%), Postives = 382/424 (90.09%), Query Frame = 0


Query: 213 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGN 272
           KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 
Sbjct: 217 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG- 276

Query: 273 AIMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKP 332
                                         YVEFYDAMSVPMAIALSGQLLFGQPVMVKP
Sbjct: 277 ------------------------------YVEFYDAMSVPMAIALSGQLLFGQPVMVKP 336

Query: 333 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 392
           SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD
Sbjct: 337 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 396

Query: 393 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 452
           LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD
Sbjct: 397 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 456

Query: 453 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA 512
           DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA
Sbjct: 457 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA 516

Query: 513 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIY 572
           PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIY
Sbjct: 517 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIY 576

Query: 573 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAK 632
           VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM           QPQVYEAK
Sbjct: 577 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM-----------QPQVYEAK 598

Query: 633 FIGA 637
           FIGA
Sbjct: 637 FIGA 598

[Close]

BLAST of Carg10563 vs. NCBI nr
Match: XP_022949796.1 (RNA-binding protein 39-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 723.4 bits (1866), Expect = 6.7e-205
Identity = 381/423 (90.07%), Postives = 381/423 (90.07%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG  
Sbjct: 220 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-- 279

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEFYDAMSVPMAIALSGQLLFGQPVMVKPS
Sbjct: 280 -----------------------------YVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 339

Query: 334 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 393
           EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL
Sbjct: 340 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 399

Query: 394 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 453
           ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD
Sbjct: 400 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 459

Query: 454 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP 513
           EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP
Sbjct: 460 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP 519

Query: 514 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV 573
           VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV
Sbjct: 520 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV 579

Query: 574 DKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKF 633
           DKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM           QPQVYEAKF
Sbjct: 580 DKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM-----------QPQVYEAKF 600

Query: 634 IGA 637
           IGA
Sbjct: 640 IGA 600

[Close]

BLAST of Carg10563 vs. NCBI nr
Match: XP_022978011.1 (RNA-binding protein 39-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 720.7 bits (1859), Expect = 4.4e-204
Identity = 380/424 (89.62%), Postives = 380/424 (89.62%), Query Frame = 0


Query: 213 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGN 272
           KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 
Sbjct: 194 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG- 253

Query: 273 AIMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKP 332
                                         YVEFYDAMSVPMAIALSGQLLFGQPVMVKP
Sbjct: 254 ------------------------------YVEFYDAMSVPMAIALSGQLLFGQPVMVKP 313

Query: 333 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 392
           SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD
Sbjct: 314 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 373

Query: 393 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 452
           LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD
Sbjct: 374 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 433

Query: 453 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA 512
           DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP NGQAAVAA
Sbjct: 434 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQNGQAAVAA 493

Query: 513 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIY 572
           PVLPANFTPPVLQSVGSPSECLLLKNMFDPS ETAPDFDLEIKEDVEEECSKYGHVKHIY
Sbjct: 494 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSMETAPDFDLEIKEDVEEECSKYGHVKHIY 553

Query: 573 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAK 632
           VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM           QPQVYEAK
Sbjct: 554 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM-----------QPQVYEAK 575

Query: 633 FIGA 637
           FIGA
Sbjct: 614 FIGA 575

[Close]

BLAST of Carg10563 vs. NCBI nr
Match: XP_022978009.1 (RNA-binding protein 39-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 720.7 bits (1859), Expect = 4.4e-204
Identity = 380/424 (89.62%), Postives = 380/424 (89.62%), Query Frame = 0


Query: 213 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGN 272
           KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 
Sbjct: 212 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG- 271

Query: 273 AIMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKP 332
                                         YVEFYDAMSVPMAIALSGQLLFGQPVMVKP
Sbjct: 272 ------------------------------YVEFYDAMSVPMAIALSGQLLFGQPVMVKP 331

Query: 333 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 392
           SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD
Sbjct: 332 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 391

Query: 393 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 452
           LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD
Sbjct: 392 LESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDD 451

Query: 453 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA 512
           DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP NGQAAVAA
Sbjct: 452 DEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQNGQAAVAA 511

Query: 513 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIY 572
           PVLPANFTPPVLQSVGSPSECLLLKNMFDPS ETAPDFDLEIKEDVEEECSKYGHVKHIY
Sbjct: 512 PVLPANFTPPVLQSVGSPSECLLLKNMFDPSMETAPDFDLEIKEDVEEECSKYGHVKHIY 571

Query: 573 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAK 632
           VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM           QPQVYEAK
Sbjct: 572 VDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM-----------QPQVYEAK 593

Query: 633 FIGA 637
           FIGA
Sbjct: 632 FIGA 593

[Close]

BLAST of Carg10563 vs. NCBI nr
Match: XP_008440993.1 (PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo])

HSP 1 Score: 711.4 bits (1835), Expect = 2.6e-201
Identity = 373/423 (88.18%), Postives = 377/423 (89.13%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG  
Sbjct: 218 DTAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-- 277

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEFYDAMSVPMAIALSGQLL GQPVMVKPS
Sbjct: 278 -----------------------------YVEFYDAMSVPMAIALSGQLLLGQPVMVKPS 337

Query: 334 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 393
           EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL
Sbjct: 338 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 397

Query: 394 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 453
           ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDD
Sbjct: 398 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDD 457

Query: 454 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP 513
           EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLPLNGQAAVAAP
Sbjct: 458 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQAAVAAP 517

Query: 514 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV 573
           VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFD+EIKEDVEEECSKYGHVKHIYV
Sbjct: 518 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYV 577

Query: 574 DKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKF 633
           DKNSAGCVYLQYDTVEAA+NAQRAMHLRWFAGRQISVLFM           QPQVYEAKF
Sbjct: 578 DKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM-----------QPQVYEAKF 598

Query: 634 IGA 637
           IGA
Sbjct: 638 IGA 598

[Close]

BLAST of Carg10563 vs. TAIR10
Match: AT5G09880.1 (Splicing factor, CC1-like)

HSP 1 Score: 502.7 bits (1293), Expect = 3.4e-142
Identity = 277/415 (66.75%), Postives = 306/415 (73.73%), Query Frame = 0


Query: 220 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDG 279
           ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG        
Sbjct: 161 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-------- 220

Query: 280 GNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNL 339
                                  Y+EFYD MSVPMAIALSGQL  GQPVMVKPSEAEKNL
Sbjct: 221 -----------------------YIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNL 280

Query: 340 VQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCK 399
            QSN++   G GP    DRKLYVGNLHFNM+E  LR+IFEAFGPVELVQLPLD E+G CK
Sbjct: 281 AQSNSTTVGGTGP---ADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCK 340

Query: 400 GFGFVQFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGL 459
           GFGF+QF  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DHIG Q++  KS D DDD+GGGL
Sbjct: 341 GFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGL 400

Query: 460 ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPVLPAN 519
           ALNAQSRA+LMQKLDR+GIATSI GSLG P LN +A NQ   +       +    VLP  
Sbjct: 401 ALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMN------PSFPTSVLPTT 460

Query: 520 FTPP-VLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYVDKNS 579
             P  V + VG PSECLLLKNMFDP+TET P+FDLEI++DV +ECSKYG V HIYVDKNS
Sbjct: 461 AIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS 520

Query: 580 AGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAK 633
           AG VYL++ +VEAA  AQRAMH+RWFA + IS  FM            P  YEAK
Sbjct: 521 AGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFM-----------PPHEYEAK 524

[Close]

BLAST of Carg10563 vs. TAIR10
Match: AT2G16940.2 (Splicing factor, CC1-like)

HSP 1 Score: 364.0 bits (933), Expect = 1.9e-100
Identity = 219/418 (52.39%), Postives = 256/418 (61.24%), Query Frame = 0


Query: 226 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTMQS 285
           QRTVFAYQ+ L+ATERDVYEFFS+AGKVRDVR+IMDR SRRS+G+G              
Sbjct: 230 QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIG-------------- 289

Query: 286 CLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNT- 345
                            YVEFYD MSVPMAIALSGQ L GQPVMVKPSEAEKNLVQS T 
Sbjct: 290 -----------------YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTA 349

Query: 346 -SGASG-AGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFG 405
            +GA G  GPY    R+LYVGNLH NM+E  LR++FE+FG VELVQ+P D E+G CKGFG
Sbjct: 350 AAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFG 409

Query: 406 FVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE--NVAKSNDLDDDEGGGLAL 465
           FVQFA LE A+ A +LNG+LEIAGR IKVS+VTD     E      + DLDDD+GGGL+L
Sbjct: 410 FVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSL 469

Query: 466 NAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPVLPANFT 525
           NAQSRALLMQKLDR+G A+S   +  A                                 
Sbjct: 470 NAQSRALLMQKLDRSGTASSTGLTTAASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 529

Query: 526 PPV-----LQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYVDK 585
                      +G PSECLLLKNMFDPSTET                SK+G + HI+VDK
Sbjct: 530 XXXXXXXGFDPIGVPSECLLLKNMFDPSTETEDXXXXXXXXXXXXXXSKFGKLNHIFVDK 589

Query: 586 NSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKF 634
           NS G VYL+++  +AAI AQRA+H RWFAG+ I+  +M             + YEAKF
Sbjct: 590 NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYM-----------TTEAYEAKF 604

[Close]

BLAST of Carg10563 vs. TAIR10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-09
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 355 AVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK- 414
           + D KL+VGNL FN+    L ++FE+ G VE+V++  D  +G  +GFGFV  + +   + 
Sbjct: 88  SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147

Query: 415 AAQSLNGKLEIAGRTIKVSS 434
           AAQ  NG  E+ GR ++V++
Sbjct: 148 AAQQFNG-YELDGRPLRVNA 166

[Close]

BLAST of Carg10563 vs. TAIR10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-09
Identity = 60/208 (28.85%), Postives = 87/208 (41.83%), Query Frame = 0


Query: 226 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTMQS 285
           +R +F + +P   +  D+ E F + G V +V +I  ++    K  G A +    G   Q+
Sbjct: 94  KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD---GKNRGFAFVTMASGEEAQA 153

Query: 286 CLINSCCLFKVDNINLRYVEFYDAMSVP-MAIALSGQLLFGQPVMVKPSEAEKNLVQSNT 345
                             ++ +D   V    I++S    F +P    P++          
Sbjct: 154 A-----------------IDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLP-------- 213

Query: 346 SGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEA--FGPVELVQLPLDLESGHCKGFG 405
                +   G    KLYV NL +    THLRE+F A  F PV    +  D E G   G+G
Sbjct: 214 -----SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYG 266

Query: 406 FVQFAHLEHAK-AAQSLNGKLEIAGRTI 430
           FV FA  E A+ A   LNGK EI GR I
Sbjct: 274 FVSFATREEAENAITKLNGK-EIMGRPI 266

[Close]

BLAST of Carg10563 vs. TAIR10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-09
Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 0


Query: 359 KLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSL 418
           +LYVGNL + +T + L +IF   G V  VQ+  D  +   +GFGFV    +E AK A  +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 419 NGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDE----------GGGLALNAQSRALL 478
               +I GRT+KV+      G +  V ++   D++            G L  N  S+ L 
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 479 MQKLDRTGIATSIAGSLGAPVL 491
               D+ G+       LGA V+
Sbjct: 237 DAFGDQPGV-------LGAKVI 251

[Close]

BLAST of Carg10563 vs. Swiss-Prot
Match: sp|Q5RC80|RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-62
Identity = 173/416 (41.59%), Postives = 226/416 (54.33%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+   
Sbjct: 143 DNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA-- 202

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEF D  SVP+AI L+GQ + G P++V+ S
Sbjct: 203 -----------------------------YVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 262

Query: 334 EAEKN--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPL 393
           +AEKN     +N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +
Sbjct: 263 QAEKNRAAAMANNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 322

Query: 394 DLESGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDL 453
           D E+G  KG+GF+ F+  E A KA + LNG  E+AGR +KV  VT+   A  + +   D 
Sbjct: 323 DSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDS 382

Query: 454 DDDEGGGLALNAQSRALLMQKL-DRTGI--------ATSIAGSLGAPVLNASAPNQRATS 513
           D+ E  G+ L    R  LM +L + TG+        A  ++GSL      A A  Q   S
Sbjct: 383 DELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSL---AFGAVADLQTRLS 442

Query: 514 LPLNGQA-AVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEE 573
                 A A AA V P              ++C  L NMF+P TE    +D EIK+DV E
Sbjct: 443 QQTEASALAAAASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIE 502

Query: 574 ECSKYGHVKHIYVDKNSA-GCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLL 616
           EC+K+G V HIYVDKNSA G VY++  ++ AAI A  A+H RWFAG+ I+  ++ L
Sbjct: 503 ECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 502

[Close]

BLAST of Carg10563 vs. Swiss-Prot
Match: sp|Q14498|RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 1.3e-61
Identity = 173/419 (41.29%), Postives = 227/419 (54.18%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+   
Sbjct: 143 DNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA-- 202

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEF D  SVP+AI L+GQ + G P++V+ S
Sbjct: 203 -----------------------------YVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 262

Query: 334 EAEKN--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPL 393
           +AEKN     +N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +
Sbjct: 263 QAEKNRAAAMANNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 322

Query: 394 DLESGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDL 453
           D E+G  KG+GF+ F+  E A KA + LNG  E+AGR +KV  VT+   A  + +   D 
Sbjct: 323 DSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDS 382

Query: 454 DDDEGGGLALNAQSRALLMQKL-DRTGI--------ATSIAGSLG-APVLNASAPNQRAT 513
           D+ E  G+ L    R  LM +L + TG+        A  ++GSL    V   S      T
Sbjct: 383 DELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQT 442

Query: 514 SLPLNGQA---AVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKED 573
            L    +A   A AA V P              ++C  L NMF+P TE    +D EIK+D
Sbjct: 443 RLSQQTEASALAAAASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDD 502

Query: 574 VEEECSKYGHVKHIYVDKNSA-GCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLL 616
           V EEC+K+G V HIYVDKNSA G VY++  ++ AAI A  A+H RWFAG+ I+  ++ L
Sbjct: 503 VIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 508

[Close]

BLAST of Carg10563 vs. Swiss-Prot
Match: sp|Q8VH51|RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 1.3e-61
Identity = 173/419 (41.29%), Postives = 227/419 (54.18%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+   
Sbjct: 143 DNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA-- 202

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEF D  SVP+AI L+GQ + G P++V+ S
Sbjct: 203 -----------------------------YVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 262

Query: 334 EAEKN--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPL 393
           +AEKN     +N      AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +
Sbjct: 263 QAEKNRAAAMANNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 322

Query: 394 DLESGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDL 453
           D E+G  KG+GF+ F+  E A KA + LNG  E+AGR +KV  VT+   A  + +   D 
Sbjct: 323 DSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDS 382

Query: 454 DDDEGGGLALNAQSRALLMQKL-DRTGI--------ATSIAGSLG-APVLNASAPNQRAT 513
           D+ E  G+ L    R  LM +L + TG+        A  ++GSL    V   S      T
Sbjct: 383 DELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQT 442

Query: 514 SLPLNGQA---AVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKED 573
            L    +A   A AA V P              ++C  L NMF+P TE    +D EIK+D
Sbjct: 443 RLSQQTEASALAAAASVQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDD 502

Query: 574 VEEECSKYGHVKHIYVDKNSA-GCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLL 616
           V EEC+K+G V HIYVDKNSA G VY++  ++ AAI A  A+H RWFAG+ I+  ++ L
Sbjct: 503 VIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 508

[Close]

BLAST of Carg10563 vs. Swiss-Prot
Match: sp|O13845|RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-40
Identity = 124/391 (31.71%), Postives = 192/391 (49.10%), Query Frame = 0


Query: 225 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTMQ 284
           D+RTVF  Q+  + T R++Y+FF +AG VRD +++ D+ S RSKGV              
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA------------- 297

Query: 285 SCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNT 344
                             YVEF    SV  AIALSG+ L G PV+V+ +EAEKN      
Sbjct: 298 ------------------YVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREA 357

Query: 345 SGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFV 404
           +  + A        +L V N+HFN+T+  ++ IFE FG +E V L  D +    KGFG++
Sbjct: 358 AELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYI 417

Query: 405 QFAH-LEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQ 464
           Q+ + +    A + +NG  ++AGR ++V    D    +   +     D+       L  Q
Sbjct: 418 QYRNPISARNALEKMNG-FDLAGRNMRVCLGNDKFTTETTSSMLKRFDE------TLARQ 477

Query: 465 SRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPV-----LPAN 524
            R+   Q+   +    S      AP+      ++  T   L  + A +  +     L + 
Sbjct: 478 ERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARSEDISDNSKLVSE 537

Query: 525 FTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEEC-SKYGHVKHIYVDKNS 584
             PP+       S C LL+NMF+P+ ET+P++  E+++DV+EEC  KYG V HI V  N 
Sbjct: 538 PEPPI------RSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNE 583

Query: 585 AGCVYLQYDTVEAAINAQRAMHLRWFAGRQI 609
            G ++++++  + A  A   +H RWF GR I
Sbjct: 598 LGQIFVKFENADFAEKAITGLHQRWFGGRTI 583

[Close]

BLAST of Carg10563 vs. Swiss-Prot
Match: sp|Q86U06|RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-36
Identity = 120/335 (35.82%), Postives = 165/335 (49.25%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D + PE   ERD RTVF  Q+  +   RD+ +FFS  GKVRDVR+I DRNSRRSKG+   
Sbjct: 156 DNLSPE---ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIA-- 215

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEF +  SVP+AI L+GQ L G P++V+ S
Sbjct: 216 -----------------------------YVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 275

Query: 334 EAEKN--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPL 393
           +AEKN     +N       GP      +LYVG+LHFN+TE  LR IFE FG ++ + L  
Sbjct: 276 QAEKNRLAAMANNLQKGNGGP-----MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK 335

Query: 394 DLESGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHI-GAQENVAKSND 453
           D ++G  KG+GF+ F+  E A +A + LNG  E+AGR ++V  VT+ + G  +      D
Sbjct: 336 DSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHVTERLDGGTDITFPDGD 395

Query: 454 LDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAA 513
            + D G     +A  R  LM KL     A      L +                LNG   
Sbjct: 396 QELDLG-----SAGGRFQLMAKL-----AEGAGIQLPSTXXXXXXXXXXXXXXQLNGAVP 438

Query: 514 VAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPST 545
           + A + PA  T  +  ++   S+C  L ++F P T
Sbjct: 456 LGA-LNPAALT-ALSPALNLASQCFQLSSLFTPQT 438

[Close]

BLAST of Carg10563 vs. TrEMBL
Match: tr|A0A1S3B2E3|A0A1S3B2E3_CUCME (RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 1.8e-201
Identity = 373/423 (88.18%), Postives = 377/423 (89.13%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG  
Sbjct: 218 DTAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-- 277

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEFYDAMSVPMAIALSGQLL GQPVMVKPS
Sbjct: 278 -----------------------------YVEFYDAMSVPMAIALSGQLLLGQPVMVKPS 337

Query: 334 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 393
           EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL
Sbjct: 338 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 397

Query: 394 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 453
           ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDD
Sbjct: 398 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDD 457

Query: 454 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP 513
           EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLPLNGQAAVAAP
Sbjct: 458 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQAAVAAP 517

Query: 514 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV 573
           VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFD+EIKEDVEEECSKYGHVKHIYV
Sbjct: 518 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYV 577

Query: 574 DKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKF 633
           DKNSAGCVYLQYDTVEAA+NAQRAMHLRWFAGRQISVLFM           QPQVYEAKF
Sbjct: 578 DKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM-----------QPQVYEAKF 598

Query: 634 IGA 637
           IGA
Sbjct: 638 IGA 598

[Close]

BLAST of Carg10563 vs. TrEMBL
Match: tr|A0A1S3B1Y4|A0A1S3B1Y4_CUCME (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 5.6e-200
Identity = 373/425 (87.76%), Postives = 377/425 (88.71%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG  
Sbjct: 218 DTAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-- 277

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEFYDAMSVPMAIALSGQLL GQPVMVKPS
Sbjct: 278 -----------------------------YVEFYDAMSVPMAIALSGQLLLGQPVMVKPS 337

Query: 334 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 393
           EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL
Sbjct: 338 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 397

Query: 394 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 453
           ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDD
Sbjct: 398 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDD 457

Query: 454 EGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVA 513
           EGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLPLNGQAAVA
Sbjct: 458 EGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQAAVA 517

Query: 514 APVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHI 573
           APVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFD+EIKEDVEEECSKYGHVKHI
Sbjct: 518 APVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHI 577

Query: 574 YVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEA 633
           YVDKNSAGCVYLQYDTVEAA+NAQRAMHLRWFAGRQISVLFM           QPQVYEA
Sbjct: 578 YVDKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM-----------QPQVYEA 600

Query: 634 KFIGA 637
           KFIGA
Sbjct: 638 KFIGA 600

[Close]

BLAST of Carg10563 vs. TrEMBL
Match: tr|A0A0A0KFB3|A0A0A0KFB3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 2.1e-199
Identity = 370/420 (88.10%), Postives = 375/420 (89.29%), Query Frame = 0


Query: 217 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMM 276
           EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG     
Sbjct: 221 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG----- 280

Query: 277 RDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAE 336
                                     YVEFYDAMSVPMAIALSGQLL GQPVMVKPSEAE
Sbjct: 281 --------------------------YVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAE 340

Query: 337 KNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESG 396
           KNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESG
Sbjct: 341 KNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESG 400

Query: 397 HCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGG 456
           HCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDDEGG
Sbjct: 401 HCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDDEGG 460

Query: 457 GLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPVLP 516
           GLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLP+NGQAAVAAPVLP
Sbjct: 461 GLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAAPVLP 520

Query: 517 ANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYVDKN 576
           ANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFD+EIKEDVEEECSKYG VKHIYVDKN
Sbjct: 521 ANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKN 580

Query: 577 SAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVYEAKFIGA 636
           SAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM           QPQVYEAKFIGA
Sbjct: 581 SAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM-----------QPQVYEAKFIGA 598

[Close]

BLAST of Carg10563 vs. TrEMBL
Match: tr|A0A1S3B2F7|A0A1S3B2F7_CUCME (RNA-binding protein 39 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 4.1e-174
Identity = 324/362 (89.50%), Postives = 327/362 (90.33%), Query Frame = 0


Query: 214 DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 273
           D  EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG  
Sbjct: 218 DTAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG-- 277

Query: 274 IMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPS 333
                                        YVEFYDAMSVPMAIALSGQLL GQPVMVKPS
Sbjct: 278 -----------------------------YVEFYDAMSVPMAIALSGQLLLGQPVMVKPS 337

Query: 334 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 393
           EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL
Sbjct: 338 EAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDL 397

Query: 394 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD 453
           ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+VAKSNDLDDD
Sbjct: 398 ESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQESVAKSNDLDDD 457

Query: 454 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP 513
           EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLPLNGQAAVAAP
Sbjct: 458 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPLNGQAAVAAP 517

Query: 514 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYV 573
           VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFD+EIKEDVEEECSKYGHVKHIYV
Sbjct: 518 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGHVKHIYV 548

Query: 574 DK 576
           DK
Sbjct: 578 DK 548

[Close]

BLAST of Carg10563 vs. TrEMBL
Match: tr|M5WL68|M5WL68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G161000 PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 7.7e-173
Identity = 326/424 (76.89%), Postives = 352/424 (83.02%), Query Frame = 0


Query: 213 KDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGN 272
           K+ VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 
Sbjct: 245 KEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG- 304

Query: 273 AIMMRDGGNTMQSCLINSCCLFKVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKP 332
                                         Y+EFYDAMSVPMAIALSGQLL GQPVMVKP
Sbjct: 305 ------------------------------YIEFYDAMSVPMAIALSGQLLLGQPVMVKP 364

Query: 333 SEAEKNLVQSNTSGAS--GAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLP 392
           SEAEKNLVQSNTSG +   AGPYGAVDRKLYVGNLHFNMTETHLREIFE FGPVELVQLP
Sbjct: 365 SEAEKNLVQSNTSGGAVGVAGPYGAVDRKLYVGNLHFNMTETHLREIFEPFGPVELVQLP 424

Query: 393 LDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDL 452
           LDLE+G CKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDH+G+QE  AKS D 
Sbjct: 425 LDLETGQCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQETGAKSADF 484

Query: 453 DDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAV 512
           DDD+GGGL+LNAQSRALLMQKLDRTGIATSIAGSLG PVLN SAPNQRA +LP+NGQAAV
Sbjct: 485 DDDDGGGLSLNAQSRALLMQKLDRTGIATSIAGSLGVPVLNGSAPNQRAGTLPINGQAAV 544

Query: 513 AAPVLPANFTP-PVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVK 572
           +AP+LPA   P  V + +G+PSECLLLKNMFDP+TE  PDFD++IK+DVEEECSK G VK
Sbjct: 545 SAPILPATVMPFAVTEPIGNPSECLLLKNMFDPATEREPDFDIDIKDDVEEECSKCGRVK 604

Query: 573 HIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQVY 632
           HIYVDKN+AG VYL+++TVEAA  AQ++MHLRWFAGRQIS LFM           QPQVY
Sbjct: 605 HIYVDKNTAGFVYLRFETVEAAAAAQQSMHLRWFAGRQISALFM-----------QPQVY 626

Query: 633 EAKF 634
           EA+F
Sbjct: 665 EARF 626

The following BLAST results are available for this feature:

BLAST of Carg10563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543913.1	1.8e-205	90.09	RNA-binding protein 39-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022949796.1	6.7e-205	90.07	RNA-binding protein 39-like isoform X1 [Cucurbita moschata]	[more]
XP_022978011.1	4.4e-204	89.62	RNA-binding protein 39-like isoform X3 [Cucurbita maxima]	[more]
XP_022978009.1	4.4e-204	89.62	RNA-binding protein 39-like isoform X1 [Cucurbita maxima]	[more]
XP_008440993.1	2.6e-201	88.18	PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo]	[more]

BLAST of Carg10563 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09880.1	3.4e-142	66.75	Splicing factor, CC1-like	[more]
AT2G16940.2	1.9e-100	52.39	Splicing factor, CC1-like	[more]
AT2G37220.1	1.2e-09	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	1.5e-09	28.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.0e-09	30.99	chloroplast RNA-binding protein 33	[more]

BLAST of Carg10563 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5RC80\|RBM39_PONAB	2.5e-62	41.59	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
sp\|Q14498\|RBM39_HUMAN	1.3e-61	41.29	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
sp\|Q8VH51\|RBM39_MOUSE	1.3e-61	41.29	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
sp\|O13845\|RSD1_SCHPO	1.6e-40	31.71	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
sp\|Q86U06\|RBM23_HUMAN	5.3e-36	35.82	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of Carg10563 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2E3\|A0A1S3B2E3_CUCME	1.8e-201	88.18	RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
tr\|A0A1S3B1Y4\|A0A1S3B1Y4_CUCME	5.6e-200	87.76	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
tr\|A0A0A0KFB3\|A0A0A0KFB3_CUCSA	2.1e-199	88.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1	[more]
tr\|A0A1S3B2F7\|A0A1S3B2F7_CUCME	4.1e-174	89.50	RNA-binding protein 39 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
tr\|M5WL68\|M5WL68_PRUPE	7.7e-173	76.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G161000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR029123	RBM39_linker
IPR006509	RBM39_SF
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10563-RA	Carg10563-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	COILS	Coil	Coil	coord: 150..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..224
None	No IPR available	PANTHER	PTHR44425:SF1	SPLICING FACTOR, CC1-LIKE	coord: 301..611
None	No IPR available	PANTHER	PTHR44425	FAMILY NOT NAMED	coord: 1..133 coord: 125..272
None	No IPR available	PANTHER	PTHR44425:SF1	SPLICING FACTOR, CC1-LIKE	coord: 1..133 coord: 125..272
None	No IPR available	PANTHER	PTHR44425	FAMILY NOT NAMED	coord: 301..611
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 228..331 e-value: 2.10806E-38 score: 135.426
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 531..613 e-value: 2.66827E-38 score: 135.75
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 359..432 e-value: 1.8E-24 score: 97.3 coord: 228..331 e-value: 3.5E-5 score: 33.2 coord: 533..611 e-value: 5.4E-6 score: 35.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 234..271 e-value: 3.1E-5 score: 23.6 coord: 555..608 e-value: 3.9E-5 score: 23.3 coord: 360..430 e-value: 2.1E-18 score: 65.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 358..436 score: 17.916
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 227..335 score: 10.241
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 302..614 e-value: 2.3E-108 score: 361.3
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 450..549 e-value: 1.9E-23 score: 83.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 528..621 e-value: 7.5E-30 score: 105.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 351..449 e-value: 1.9E-24 score: 87.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 529..612
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 220..266 coord: 298..337
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 358..434

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10563	Cla008468	Watermelon (97103) v1	carwmB0226
Carg10563	Csa6G486730	Cucumber (Chinese Long) v2	carcuB0267
Carg10563	MELO3C008019	Melon (DHL92) v3.5.1	carmeB0242
Carg10563	ClCG01G015790	Watermelon (Charleston Gray)	carwcgB0230
Carg10563	CSPI06G26910	Wild cucumber (PI 183967)	carcpiB0271
Carg10563	Cucsa.101320	Cucumber (Gy14) v1	carcgyB0280
Carg10563	CmaCh07G007750	Cucurbita maxima (Rimu)	carcmaB0335
Carg10563	CmaCh03G010640	Cucurbita maxima (Rimu)	carcmaB0333
Carg10563	CmoCh03G010610	Cucurbita moschata (Rifu)	carcmoB0336
Carg10563	Cp4.1LG10g03240	Cucurbita pepo (Zucchini)	carcpeB0337
Carg10563	Cp4.1LG19g12090	Cucurbita pepo (Zucchini)	carcpeB0338
Carg10563	CsGy6G026290	Cucumber (Gy14) v2	carcgybB0255
Carg10563	MELO3C008019.2	Melon (DHL92) v3.6.1	carmedB0251
Carg10563	CsaV3_6G042060	Cucumber (Chinese Long) v3	carcucB0271
Carg10563	Cla97C01G014740	Watermelon (97103) v2	carwmbB0239
Carg10563	Bhi03G001083	Wax gourd	carwgoB0304

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10563	Carg05286	Silver-seed gourd	carcarB280

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10563	Cucumber (Gy14) v2	carcgybB0253
Carg10563	Cucumber (Gy14) v1	carcgyB0283
Carg10563	Cucurbita moschata (Rifu)	carcmoB0338
Carg10563	Wild cucumber (PI 183967)	carcpiB0268
Carg10563	Cucumber (Chinese Long) v2	carcuB0264
Carg10563	Cucumber (Chinese Long) v3	carcucB0268
Carg10563	Bottle gourd (USVL1VR-Ls)	carlsiB213
Carg10563	Bottle gourd (USVL1VR-Ls)	carlsiB214
Carg10563	Watermelon (97103) v1	carwmB0229
Carg10563	Watermelon (97103) v2	carwmbB0243