Carg10476 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10476
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Germin-like protein
Location	Cucurbita_argyrosperma_scaffold_098 : 389826 .. 390470 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGTGTCTCAAAATCCTGATACCCATCTTCGCATTTCACCTAATTCTCACAACCGTCGTGGCCTCAGATCCCGACCCACTTCAAGATTTCTGCATCCCGAATCCCAAACCCACAAAAAAAGACGACCTTCCATGTAAGAATTCAACCGCCGTCACCGCCGACGACTTCGTCTTCTCCGGCGGAAAATCCGCCGGACCCTTCTCGGATAATGGGTTCGCAACGGTAGCGGCAAACCCATCTCTTTTCCCGGGATTGAACACGCTGGGAATGTCGTTCGTACGCGCGGATTTCAAGGAGGGGGCCATAAATCCGCCGCACGTGCACCCACGCGCAGCGGAGATGGTGTACGTGGTTCAGGGGAGGGTGTACGCCGGATTTGTTGACTCGGCGAACCGGGTGTACGCGAAGGTGATCGGAGAAGGGGAAGTGATGGTGATTCCGAGGGGGCTGGTGCACTTCCAGATGAACGTGGGGAAGGGAACGGCGACGGTTTTTGGGTGTTTTAATAGTCAAAATCCGGGGACCCAGAGAATGGCGTCGGCCATATTTGGGTCTGGGATTAAAGAGGAGCTTTTGGAGAAGGCTTTTGGTTTGAGTTCCAAGGATCTTAGGAGGATGAGGAGACGGTTCGAATCTTGA

mRNA sequence

ATGAAAATGTGTCTCAAAATCCTGATACCCATCTTCGCATTTCACCTAATTCTCACAACCGTCGTGGCCTCAGATCCCGACCCACTTCAAGATTTCTGCATCCCGAATCCCAAACCCACAAAAAAAGACGACCTTCCATGTAAGAATTCAACCGCCGTCACCGCCGACGACTTCGTCTTCTCCGGCGGAAAATCCGCCGGACCCTTCTCGGATAATGGGTTCGCAACGGTAGCGGCAAACCCATCTCTTTTCCCGGGATTGAACACGCTGGGAATGTCGTTCGTACGCGCGGATTTCAAGGAGGGGGCCATAAATCCGCCGCACGTGCACCCACGCGCAGCGGAGATGGTGTACGTGGTTCAGGGGAGGGTGTACGCCGGATTTGTTGACTCGGCGAACCGGGTGTACGCGAAGGTGATCGGAGAAGGGGAAGTGATGGTGATTCCGAGGGGGCTGGTGCACTTCCAGATGAACGTGGGGAAGGGAACGGCGACGGTTTTTGGGTGTTTTAATAGTCAAAATCCGGGGACCCAGAGAATGGCGTCGGCCATATTTGGGTCTGGGATTAAAGAGGAGCTTTTGGAGAAGGCTTTTGGTTTGAGTTCCAAGGATCTTAGGAGGATGAGGAGACGGTTCGAATCTTGA

Coding sequence (CDS)

ATGAAAATGTGTCTCAAAATCCTGATACCCATCTTCGCATTTCACCTAATTCTCACAACCGTCGTGGCCTCAGATCCCGACCCACTTCAAGATTTCTGCATCCCGAATCCCAAACCCACAAAAAAAGACGACCTTCCATGTAAGAATTCAACCGCCGTCACCGCCGACGACTTCGTCTTCTCCGGCGGAAAATCCGCCGGACCCTTCTCGGATAATGGGTTCGCAACGGTAGCGGCAAACCCATCTCTTTTCCCGGGATTGAACACGCTGGGAATGTCGTTCGTACGCGCGGATTTCAAGGAGGGGGCCATAAATCCGCCGCACGTGCACCCACGCGCAGCGGAGATGGTGTACGTGGTTCAGGGGAGGGTGTACGCCGGATTTGTTGACTCGGCGAACCGGGTGTACGCGAAGGTGATCGGAGAAGGGGAAGTGATGGTGATTCCGAGGGGGCTGGTGCACTTCCAGATGAACGTGGGGAAGGGAACGGCGACGGTTTTTGGGTGTTTTAATAGTCAAAATCCGGGGACCCAGAGAATGGCGTCGGCCATATTTGGGTCTGGGATTAAAGAGGAGCTTTTGGAGAAGGCTTTTGGTTTGAGTTCCAAGGATCTTAGGAGGATGAGGAGACGGTTCGAATCTTGA

Protein sequence

MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVFSGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES

Homology

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BLAST of Carg10476 vs. NCBI nr
Match: XP_022925793.1 (germin-like protein subfamily 3 member 2 [Cucurbita moschata])

HSP 1 Score: 427.2 bits (1097), Expect = 3.4e-116
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVF 60
           MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVF
Sbjct: 1   MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVF 60

Query: 61  SGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV 120
           SGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV
Sbjct: 61  SGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV 120

Query: 121 QGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM 180
           QGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM
Sbjct: 121 QGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM 180

Query: 181 ASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           ASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES
Sbjct: 181 ASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 214

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BLAST of Carg10476 vs. NCBI nr
Match: XP_022977900.1 (germin-like protein subfamily 3 member 2 [Cucurbita maxima])

HSP 1 Score: 415.6 bits (1067), Expect = 1.0e-112
Identity = 208/214 (97.20%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVF 60
           MKMCLKILIPIFAFHLILT VVASDPDPLQDFCIPNPK TKKDDLPCKNSTAVTADDFVF
Sbjct: 1   MKMCLKILIPIFAFHLILTIVVASDPDPLQDFCIPNPKSTKKDDLPCKNSTAVTADDFVF 60

Query: 61  SGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV 120
           SGGKSAGPFS++GFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV
Sbjct: 61  SGGKSAGPFSESGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV 120

Query: 121 QGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM 180
           QGRVYAGFVDSANR+YAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM
Sbjct: 121 QGRVYAGFVDSANRMYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM 180

Query: 181 ASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           ASAIFGSGIKEELLEKAFGLSSK+LRRMRRRFES
Sbjct: 181 ASAIFGSGIKEELLEKAFGLSSKELRRMRRRFES 214

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BLAST of Carg10476 vs. NCBI nr
Match: XP_023545026.1 (germin-like protein subfamily 3 member 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 204/214 (95.33%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVF 60
           MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPK TKKDDLPCKNSTAVTADDFVF
Sbjct: 1   MKMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKSTKKDDLPCKNSTAVTADDFVF 60

Query: 61  SGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVV 120
           SGGKSAGPFS++GFA+VAANPSLFPGLNTLGMSFV ADFKEGAINPPHVHPRAAEMVYVV
Sbjct: 61  SGGKSAGPFSESGFASVAANPSLFPGLNTLGMSFVHADFKEGAINPPHVHPRAAEMVYVV 120

Query: 121 QGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRM 180
           QGRVYAGFVDSANRVYAKVIGEGEVMVIP+GLVHFQMNVGKG A VFGCFNSQNPGTQRM
Sbjct: 121 QGRVYAGFVDSANRVYAKVIGEGEVMVIPKGLVHFQMNVGKGMARVFGCFNSQNPGTQRM 180

Query: 181 ASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           ASAIFGSGIKEELLEKAFGLSS +LRRMRRRFES
Sbjct: 181 ASAIFGSGIKEELLEKAFGLSSNELRRMRRRFES 214

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BLAST of Carg10476 vs. NCBI nr
Match: XP_008462565.1 (PREDICTED: germin-like protein subfamily 3 member 2 [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 176/213 (82.63%), Postives = 186/213 (87.32%), Query Frame = 0


Query: 3   MCLKI-LIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVFS 62
           MCLKI LIPI    LILT  +ASDPDPLQDFCIPNPK        CKNSTAVTADDFVFS
Sbjct: 1   MCLKIVLIPIL---LILTIAMASDPDPLQDFCIPNPKSFPNQ--LCKNSTAVTADDFVFS 60

Query: 63  GGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQ 122
           G KSAGPFS+ GFATVAANP  FPGLNTLGMS VR D KEGAINPPHVHPRAAEMVYVVQ
Sbjct: 61  GAKSAGPFSETGFATVAANPINFPGLNTLGMSLVRVDLKEGAINPPHVHPRAAEMVYVVQ 120

Query: 123 GRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMA 182
           G+VYAGFVDS NRVYAKVI EGEVMVIPRG+VHFQMNVGK  ATVFGCFNSQNPGTQ+MA
Sbjct: 121 GKVYAGFVDSGNRVYAKVIEEGEVMVIPRGVVHFQMNVGKRRATVFGCFNSQNPGTQKMA 180

Query: 183 SAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           +AIFGSGIKEELLEKAFGLSSK++RRM+R F+S
Sbjct: 181 AAIFGSGIKEELLEKAFGLSSKEIRRMKRMFDS 208

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BLAST of Carg10476 vs. NCBI nr
Match: XP_004143382.1 (PREDICTED: germin-like protein subfamily 3 member 2 [Cucumis sativus] >KGN48259.1 hypothetical protein Csa_6G452110 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 4.7e-86
Identity = 172/212 (81.13%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 3   MCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVFSG 62
           M LKI I I    LILT  +ASDPDPLQDFCIPNPK     D  CKNSTAVTADDFVFSG
Sbjct: 1   MFLKIPISIL---LILTIAIASDPDPLQDFCIPNPK--SFPDQLCKNSTAVTADDFVFSG 60

Query: 63  GKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQG 122
            KSAGPFS  GFATVAAN   FPGLNTLGMS VR D KEGAINPPHVHPRAAEMVYVV+G
Sbjct: 61  AKSAGPFSGTGFATVAANSINFPGLNTLGMSLVRVDLKEGAINPPHVHPRAAEMVYVVEG 120

Query: 123 RVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMAS 182
           +VYAGFVDS NRVYAKVI EGEVMVIPRG+VHFQMNVGK  ATVFGCFNSQNPGTQ+MA+
Sbjct: 121 KVYAGFVDSGNRVYAKVIEEGEVMVIPRGVVHFQMNVGKRRATVFGCFNSQNPGTQKMAA 180

Query: 183 AIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           AIFGSGIKEELLEKAFGLSSK++RRM+R F+S
Sbjct: 181 AIFGSGIKEELLEKAFGLSSKEIRRMKRMFDS 207

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BLAST of Carg10476 vs. TAIR10
Match: AT3G10080.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-68
Identity = 128/209 (61.24%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 11  IFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDD------LPCKNSTAVTADDFVFSGGK 70
           +  F++  T  +ASDPDP+QDFCIP P  +   D      LPCKNS+ VT +DFVFSG K
Sbjct: 14  LLCFNVCFT--LASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLK 73

Query: 71  SAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGRV 130
           +AG F++ GFATV   P  FPGLNTLG+SFVRAD K G+INPPH HPRA E+ ++V+GRV
Sbjct: 74  TAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRV 133

Query: 131 YAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASAI 190
           Y+GFVDS N+VYAKV+ EGE+MV P+GLVHFQMNVG  TAT+ G  NSQNPG Q++ S +
Sbjct: 134 YSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVV 193

Query: 191 FGSGIKEELLEKAFGLSSKDLRRMRRRFE 214
           FGSGI EELL KAFGLS K +  +++RF+
Sbjct: 194 FGSGINEELLMKAFGLSLKQIGTLKKRFD 220

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BLAST of Carg10476 vs. TAIR10
Match: AT1G02335.1 (germin-like protein subfamily 2 member 2 precursor)

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-41
Identity = 91/210 (43.33%), Postives = 128/210 (60.95%), Query Frame = 0


Query: 6   KILIPIFAFHLILTTVVASDPDPLQDFCIPNPK-PTKKDDLPCKNSTAVTADDFVFSG-G 65
           +I I I    +++T++ A DPD LQD C+ +    TK +  PCK +  +T  DF F+G  
Sbjct: 5   RISIIIALSCIMITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGIS 64

Query: 66  KSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGR 125
           K A   S  G A   AN    PGLNTL +S  R D+  G +NPPH HPRA E+VYV++G 
Sbjct: 65  KPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGE 124

Query: 126 VYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASA 185
           +  GF+ +AN+++ K I  GEV V PRGLVHFQ N GK  A+V   FNSQ PGT  +A+ 
Sbjct: 125 LEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAAT 184

Query: 186 IFGS--GIKEELLEKAFGLSSKDLRRMRRR 212
           +F +   + E++L K F + SK + +++ R
Sbjct: 185 LFAAEPALPEDVLTKTFQVGSKMVDKIKER 214

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BLAST of Carg10476 vs. TAIR10
Match: AT3G05930.1 (germin-like protein 8)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 83/211 (39.34%), Postives = 134/211 (63.51%), Query Frame = 0


Query: 8   LIPIF-AFHLILTTVVASDPDPLQDFCIPN-PKPTKKDDLPCKNSTAVTADDFVFSGGKS 67
           +IPIF  F L+   +  +D + LQDFC+ +     K +  PCK+   VT +DF F G  +
Sbjct: 5   MIPIFVTFMLVAAHMALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLAT 64

Query: 68  AGPFSDN--GFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGR 127
           A   +++  G A   AN    PGLNTLG+S  R D+  G +NPPH+HPRA+E ++V++GR
Sbjct: 65  AAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGR 124

Query: 128 VYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASA 187
           ++ GF+ +  ++ +K + +G+V V P+ L+HFQ N  K  A+V   F+SQ PGTQ +  +
Sbjct: 125 LFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPS 184

Query: 188 IFGSG--IKEELLEKAFGLSSKDLRRMRRRF 213
           +FGS   I ++LL KAFG ++ ++++++ +F
Sbjct: 185 LFGSNPPIPDDLLAKAFGAAAPEIQKIKGKF 215

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BLAST of Carg10476 vs. TAIR10
Match: AT5G26700.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 78/207 (37.68%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 12  FAFHLILTT----VVASDPDPLQDFCIPN-PKPTKKDDLPCKNSTAVTADDFVFSG-GKS 71
           FA HL++      V  +  + LQD C+ +     K +   CK+ST +T +DF F G    
Sbjct: 4   FATHLVVVVTMLFVAMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANI 63

Query: 72  AGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGRVY 131
           A   +  G     AN    PGLNTLG+S  R D+    +NPPHVHPRA+E+++V++G++Y
Sbjct: 64  AATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLY 123

Query: 132 AGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASAIF 191
            GFV +A ++ AK + +G+V   P+GL+HFQ N+    A+V   F+SQ PGTQ + +++F
Sbjct: 124 VGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLF 183

Query: 192 GSGIKEELLEKAFGLSSKDLRRMRRRF 213
           G+ + +++L K+F L  K +++++ R+
Sbjct: 184 GA-LPDDILAKSFQLKHKQVKKIKLRY 209

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BLAST of Carg10476 vs. TAIR10
Match: AT1G18980.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-38
Identity = 91/217 (41.94%), Postives = 128/217 (58.99%), Query Frame = 0


Query: 5   LKILIPIFAFHLILTTV-----VASDPDPLQDFCIPNPKPTKK-DDLPCKNSTAVTADDF 64
           L+I   +F   L++  V     ++SD DPLQDFC+ + K +   +  PCK+S  V+A DF
Sbjct: 4   LQISSSLFRSFLLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCKSS--VSASDF 63

Query: 65  VFSG-GKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMV 124
            FSG G      + NG A   AN   FPGLNTLG+S    +F  G +NPPH HPRA E  
Sbjct: 64  FFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAG 123

Query: 125 YVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGT 184
            V++G V+ GF+ + N +++KV+  GE+ V+PRGLVHFQ NVGK  A +   FNSQ PG+
Sbjct: 124 VVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGS 183

Query: 185 QRMASAIFGSG--IKEELLEKAFGLSSKDLRRMRRRF 213
             + S +FGS   I   +L K F      + +++ +F
Sbjct: 184 AVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKF 218

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BLAST of Carg10476 vs. Swiss-Prot
Match: sp|Q9SR72|GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana OX=3702 GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-67
Identity = 128/209 (61.24%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 11  IFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDD------LPCKNSTAVTADDFVFSGGK 70
           +  F++  T  +ASDPDP+QDFCIP P  +   D      LPCKNS+ VT +DFVFSG K
Sbjct: 14  LLCFNVCFT--LASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLK 73

Query: 71  SAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGRV 130
           +AG F++ GFATV   P  FPGLNTLG+SFVRAD K G+INPPH HPRA E+ ++V+GRV
Sbjct: 74  TAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRV 133

Query: 131 YAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASAI 190
           Y+GFVDS N+VYAKV+ EGE+MV P+GLVHFQMNVG  TAT+ G  NSQNPG Q++ S +
Sbjct: 134 YSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVV 193

Query: 191 FGSGIKEELLEKAFGLSSKDLRRMRRRFE 214
           FGSGI EELL KAFGLS K +  +++RF+
Sbjct: 194 FGSGINEELLMKAFGLSLKQIGTLKKRFD 220

[Close]

BLAST of Carg10476 vs. Swiss-Prot
Match: sp|Q6ESF0|GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.6e-55
Identity = 111/219 (50.68%), Postives = 150/219 (68.49%), Query Frame = 0


Query: 2   KMCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDL------PCKNSTAVTA 61
           + CL +L+ +    L+       DPD +QDFC+P+    +  +L      PC++   +TA
Sbjct: 5   RRCLLLLLAV----LLPAMAARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTA 64

Query: 62  DDFVFSGGKSAGPFS-DNGFATVAANPSLFPGLNTLGMSFVRADFK-EGAINPPHVHPRA 121
            DF FSG ++AG FS + GFA V+  P+ FPGL+TLGMSF RAD    G +NPPH HPRA
Sbjct: 65  GDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRA 124

Query: 122 AEMVYVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQ 181
            E   V+ GRVYAGFVDS  R++AKV+ +GEVMV PR +VHFQ+NVG   ATV+G FNS+
Sbjct: 125 TETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSE 184

Query: 182 NPGTQRMASAIFGSGIKEELLEKAFGLSSKDLRRMRRRF 213
           NPG  R+ + +FGSGI+E +LE+AFGL+  +LRR+ +RF
Sbjct: 185 NPGIVRIPATVFGSGIREAVLERAFGLTPAELRRLEKRF 219

[Close]

BLAST of Carg10476 vs. Swiss-Prot
Match: sp|Q9FZ27|GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana OX=3702 GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.6e-40
Identity = 91/210 (43.33%), Postives = 128/210 (60.95%), Query Frame = 0


Query: 6   KILIPIFAFHLILTTVVASDPDPLQDFCIPNPK-PTKKDDLPCKNSTAVTADDFVFSG-G 65
           +I I I    +++T++ A DPD LQD C+ +    TK +  PCK +  +T  DF F+G  
Sbjct: 5   RISIIIALSCIMITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGIS 64

Query: 66  KSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQGR 125
           K A   S  G A   AN    PGLNTL +S  R D+  G +NPPH HPRA E+VYV++G 
Sbjct: 65  KPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGE 124

Query: 126 VYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMASA 185
           +  GF+ +AN+++ K I  GEV V PRGLVHFQ N GK  A+V   FNSQ PGT  +A+ 
Sbjct: 125 LEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAAT 184

Query: 186 IFGS--GIKEELLEKAFGLSSKDLRRMRRR 212
           +F +   + E++L K F + SK + +++ R
Sbjct: 185 LFAAEPALPEDVLTKTFQVGSKMVDKIKER 214

[Close]

BLAST of Carg10476 vs. Swiss-Prot
Match: sp|Q75HJ4|GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-39
Identity = 94/219 (42.92%), Postives = 129/219 (58.90%), Query Frame = 0


Query: 8   LIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKD----------DLPCKNSTAVTADD 67
           L+ + A   +L +   +DP+P+QDFC+    P   D            PCK ++ V +DD
Sbjct: 9   LLVLSAALAVLASTCIADPEPVQDFCVA-VVPRAGDAAAAACPAYPGFPCKPASTVVSDD 68

Query: 68  FVFSGGKSAGPFSDN--GFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAE 127
           F F+G   A   +DN  GF   AAN   FPGLNTLG+S  R D   G +NP H HPRA E
Sbjct: 69  FFFAGLAVASD-TDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATE 128

Query: 128 MVYVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNP 187
           +++VV GRV AGFV +A   Y+KV+GEGE  V+PRG++HFQ NVG   A V   FNSQ P
Sbjct: 129 LIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMP 188

Query: 188 GTQRMASAIFGSG--IKEELLEKAFGLSSKDLRRMRRRF 213
           G     S +FGS   I + +L K+F + +K ++ ++ +F
Sbjct: 189 GVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225

[Close]

BLAST of Carg10476 vs. Swiss-Prot
Match: sp|Q10BU2|GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GER7 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-39
Identity = 88/216 (40.74%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 7   ILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKK-----DDLPCKNSTAVTADDFVFS 66
           +L+   A   +L +  A+DP+P+QDFC+  P+   +        PCK ++AV +DDF F+
Sbjct: 18  LLVLTVAVLAVLASTCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFA 77

Query: 67  GGKSAGPFSDN--GFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYV 126
           G  +AG  +DN  G +    N   FP LNTLG++  R D   G +NP H HPRAAE+V+V
Sbjct: 78  GLAAAGS-TDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHV 137

Query: 127 VQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQR 186
           + GR+  GFV +A + Y+KV+GEGE   IPRGL+HFQ N G  +A     FNSQ PG   
Sbjct: 138 ITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVP 197

Query: 187 MASAIFGSG--IKEELLEKAFGLSSKDLRRMRRRFE 214
            A+A+FG+   I + +L K+F + ++ ++ ++ +F+
Sbjct: 198 AATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKFK 232

[Close]

BLAST of Carg10476 vs. TrEMBL
Match: tr|A0A1S3CIT4|A0A1S3CIT4_CUCME (germin-like protein subfamily 3 member 2 OS=Cucumis melo OX=3656 GN=LOC103500894 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.1e-88
Identity = 176/213 (82.63%), Postives = 186/213 (87.32%), Query Frame = 0


Query: 3   MCLKI-LIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVFS 62
           MCLKI LIPI    LILT  +ASDPDPLQDFCIPNPK        CKNSTAVTADDFVFS
Sbjct: 1   MCLKIVLIPIL---LILTIAMASDPDPLQDFCIPNPKSFPNQ--LCKNSTAVTADDFVFS 60

Query: 63  GGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQ 122
           G KSAGPFS+ GFATVAANP  FPGLNTLGMS VR D KEGAINPPHVHPRAAEMVYVVQ
Sbjct: 61  GAKSAGPFSETGFATVAANPINFPGLNTLGMSLVRVDLKEGAINPPHVHPRAAEMVYVVQ 120

Query: 123 GRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMA 182
           G+VYAGFVDS NRVYAKVI EGEVMVIPRG+VHFQMNVGK  ATVFGCFNSQNPGTQ+MA
Sbjct: 121 GKVYAGFVDSGNRVYAKVIEEGEVMVIPRGVVHFQMNVGKRRATVFGCFNSQNPGTQKMA 180

Query: 183 SAIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           +AIFGSGIKEELLEKAFGLSSK++RRM+R F+S
Sbjct: 181 AAIFGSGIKEELLEKAFGLSSKEIRRMKRMFDS 208

[Close]

BLAST of Carg10476 vs. TrEMBL
Match: tr|A0A0A0KHH1|A0A0A0KHH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452110 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.1e-86
Identity = 172/212 (81.13%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 3   MCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKPTKKDDLPCKNSTAVTADDFVFSG 62
           M LKI I I    LILT  +ASDPDPLQDFCIPNPK     D  CKNSTAVTADDFVFSG
Sbjct: 1   MFLKIPISIL---LILTIAIASDPDPLQDFCIPNPK--SFPDQLCKNSTAVTADDFVFSG 60

Query: 63  GKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQG 122
            KSAGPFS  GFATVAAN   FPGLNTLGMS VR D KEGAINPPHVHPRAAEMVYVV+G
Sbjct: 61  AKSAGPFSGTGFATVAANSINFPGLNTLGMSLVRVDLKEGAINPPHVHPRAAEMVYVVEG 120

Query: 123 RVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMAS 182
           +VYAGFVDS NRVYAKVI EGEVMVIPRG+VHFQMNVGK  ATVFGCFNSQNPGTQ+MA+
Sbjct: 121 KVYAGFVDSGNRVYAKVIEEGEVMVIPRGVVHFQMNVGKRRATVFGCFNSQNPGTQKMAA 180

Query: 183 AIFGSGIKEELLEKAFGLSSKDLRRMRRRFES 215
           AIFGSGIKEELLEKAFGLSSK++RRM+R F+S
Sbjct: 181 AIFGSGIKEELLEKAFGLSSKEIRRMKRMFDS 207

[Close]

BLAST of Carg10476 vs. TrEMBL
Match: tr|A0A1X9RKE2|A0A1X9RKE2_CAMSI (Germin-like protein OS=Camellia sinensis OX=4442 GN=GLP6 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 9.8e-72
Identity = 142/215 (66.05%), Postives = 163/215 (75.81%), Query Frame = 0


Query: 3   MCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPK-----PTKKDDLPCKNSTAVTADD 62
           M  K+ + +  F L+  T   SDPDP+QDFCIPN K      T+ D+LPCKNST V+ DD
Sbjct: 1   MSPKLTVLLVIFSLLSHTTFESDPDPVQDFCIPNTKFNTIRTTRYDNLPCKNSTEVSPDD 60

Query: 63  FVFSGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMV 122
           F+FSG KS G FSD G +T+  NP+  PGLNTLGMSFVRAD K G  N PH HPRA E+V
Sbjct: 61  FIFSGIKSPGNFSDTGLSTIPVNPTNLPGLNTLGMSFVRADLKVGWFNAPHFHPRATEIV 120

Query: 123 YVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGT 182
           YVVQGRVY+GFVDS NRV+AKV  +GEVMV PRGLVHFQMNVGK TAT+FG FNSQNPG 
Sbjct: 121 YVVQGRVYSGFVDSTNRVFAKVTEQGEVMVFPRGLVHFQMNVGKSTATIFGSFNSQNPGM 180

Query: 183 QRMASAIFGSGIKEELLEKAFGLSSKDLRRMRRRF 213
           Q++ S IFGSGI +ELLEKAFGLS K +  MRRRF
Sbjct: 181 QKIPSVIFGSGINDELLEKAFGLSPKQIGMMRRRF 215

[Close]

BLAST of Carg10476 vs. TrEMBL
Match: tr|B9SRW4|B9SRW4_RICCO (Oxalate oxidase 2, putative OS=Ricinus communis OX=3988 GN=RCOM_0516660 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.2e-71
Identity = 143/216 (66.20%), Postives = 164/216 (75.93%), Query Frame = 0


Query: 3   MCLKILIPIFAFHLILTTVVASDPDPLQDFCIPNPKP-----TKKDDLPCKNSTAVTADD 62
           M LK+ I    F L     +ASDPDP+QDFCIPNPK       +   LPCKNS+  T DD
Sbjct: 1   MSLKLNILFVTFSLQSLLALASDPDPIQDFCIPNPKAAAIKIARFTILPCKNSSDATTDD 60

Query: 63  FVFSGGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMV 122
           FVFSG K+AG FSD G AT+  NP+ FPGLNTLGMSFVRAD K GAINPPH HPRA E+ 
Sbjct: 61  FVFSGMKAAGNFSDTGLATIPVNPTNFPGLNTLGMSFVRADLKVGAINPPHFHPRATEIT 120

Query: 123 YVVQGRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGT 182
           YVVQG VY+GFVDS+NRV+A+V+ +GE MV PRGLVHFQMNVG   ATVFG FNSQNPG 
Sbjct: 121 YVVQGSVYSGFVDSSNRVFARVLEQGEAMVFPRGLVHFQMNVGDKAATVFGSFNSQNPGN 180

Query: 183 QRMASAIFGSGIKEELLEKAFGLSSKDLRRMRRRFE 214
           Q++ SAIFGSGI  +LLEKAFGLSSK +  MRR+F+
Sbjct: 181 QKIPSAIFGSGIDNKLLEKAFGLSSKQIGIMRRKFD 216

[Close]

BLAST of Carg10476 vs. TrEMBL
Match: tr|A0A2R6QW18|A0A2R6QW18_ACTCH (Germin-like protein subfamily 3 member OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc13429 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.8e-71
Identity = 143/211 (67.77%), Postives = 166/211 (78.67%), Query Frame = 0


Query: 7   ILIPIFAFHLILTTVVASDPDPLQDFCIPNP-----KPTKKDDLPCKNSTAVTADDFVFS 66
           +L+ IF+ H  +T  +ASDPDP+QDFCIPN      + T+ D LPCKNS  VT +DFVFS
Sbjct: 7   VLLVIFSLHCHIT--LASDPDPVQDFCIPNTRSGTVRTTQFDILPCKNSIKVTPEDFVFS 66

Query: 67  GGKSAGPFSDNGFATVAANPSLFPGLNTLGMSFVRADFKEGAINPPHVHPRAAEMVYVVQ 126
           G KS G FSD G + V  NP+ FPGLNTLGMS VRAD K GAIN PH HPRA E+ YVVQ
Sbjct: 67  GIKSPGNFSDTGLSVVPVNPTNFPGLNTLGMSLVRADLKVGAINAPHFHPRATEIAYVVQ 126

Query: 127 GRVYAGFVDSANRVYAKVIGEGEVMVIPRGLVHFQMNVGKGTATVFGCFNSQNPGTQRMA 186
           GRVY+GFVDSANRV+AKVI +GEVMV PRGLVHFQMNVGK  AT+FG FNSQNPG  ++A
Sbjct: 127 GRVYSGFVDSANRVFAKVIEKGEVMVFPRGLVHFQMNVGKLPATIFGSFNSQNPGNHKIA 186

Query: 187 SAIFGSGIKEELLEKAFGLSSKDLRRMRRRF 213
           SAIFGSGI +ELLEKAFG+++K +  MRRRF
Sbjct: 187 SAIFGSGINDELLEKAFGMNAKQIGMMRRRF 215

The following BLAST results are available for this feature:

BLAST of Carg10476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925793.1	3.4e-116	100.00	germin-like protein subfamily 3 member 2 [Cucurbita moschata]	[more]
XP_022977900.1	1.0e-112	97.20	germin-like protein subfamily 3 member 2 [Cucurbita maxima]	[more]
XP_023545026.1	2.1e-110	95.33	germin-like protein subfamily 3 member 2 [Cucurbita pepo subsp. pepo]	[more]
XP_008462565.1	1.7e-88	82.63	PREDICTED: germin-like protein subfamily 3 member 2 [Cucumis melo]	[more]
XP_004143382.1	4.7e-86	81.13	PREDICTED: germin-like protein subfamily 3 member 2 [Cucumis sativus] >KGN48259....	[more]

BLAST of Carg10476 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10080.1	2.4e-68	61.24	RmlC-like cupins superfamily protein	[more]
AT1G02335.1	2.5e-41	43.33	germin-like protein subfamily 2 member 2 precursor	[more]
AT3G05930.1	1.8e-39	39.34	germin-like protein 8	[more]
AT5G26700.1	1.2e-38	37.68	RmlC-like cupins superfamily protein	[more]
AT1G18980.1	4.5e-38	41.94	RmlC-like cupins superfamily protein	[more]

BLAST of Carg10476 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SR72\|GL32_ARATH	4.4e-67	61.24	Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana OX=3702 GN=At3g...	[more]
sp\|Q6ESF0\|GL24_ORYSJ	8.6e-55	50.68	Germin-like protein 2-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0532500...	[more]
sp\|Q9FZ27\|GL22_ARATH	4.6e-40	43.33	Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|Q75HJ4\|GL38_ORYSJ	1.3e-39	42.92	Germin-like protein 3-8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0804700...	[more]
sp\|Q10BU2\|GL37_ORYSJ	6.6e-39	40.74	Germin-like protein 3-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GER7 PE=2 SV...	[more]

BLAST of Carg10476 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIT4\|A0A1S3CIT4_CUCME	1.1e-88	82.63	germin-like protein subfamily 3 member 2 OS=Cucumis melo OX=3656 GN=LOC103500894...	[more]
tr\|A0A0A0KHH1\|A0A0A0KHH1_CUCSA	3.1e-86	81.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452110 PE=3 SV=1	[more]
tr\|A0A1X9RKE2\|A0A1X9RKE2_CAMSI	9.8e-72	66.05	Germin-like protein OS=Camellia sinensis OX=4442 GN=GLP6 PE=2 SV=1	[more]
tr\|B9SRW4\|B9SRW4_RICCO	2.2e-71	66.20	Oxalate oxidase 2, putative OS=Ricinus communis OX=3988 GN=RCOM_0516660 PE=3 SV=...	[more]
tr\|A0A2R6QW18\|A0A2R6QW18_ACTCH	2.8e-71	67.77	Germin-like protein subfamily 3 member OS=Actinidia chinensis var. chinensis OX=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity
GO:0030145	manganese ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR014710	RmlC-like_jellyroll
IPR006045	Cupin_1
IPR001929	Germin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10476-RA	Carg10476-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 108..128 score: 50.5 coord: 138..158 score: 52.49 coord: 171..186 score: 48.26
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 58..206 e-value: 1.1E-43 score: 161.2
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 69..203 e-value: 3.5E-41 score: 140.2
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 24..214 e-value: 4.5E-69 score: 233.9
None	No IPR available	PANTHER	PTHR31238:SF48	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 2	coord: 5..213
None	No IPR available	PANTHER	PTHR31238	FAMILY NOT NAMED	coord: 5..213
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 56..212

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10476	Cla018393	Watermelon (97103) v1	carwmB0227
Carg10476	Csa6G452110	Cucumber (Chinese Long) v2	carcuB0267
Carg10476	MELO3C024541	Melon (DHL92) v3.5.1	carmeB0242
Carg10476	ClCG04G010000	Watermelon (Charleston Gray)	carwcgB0232
Carg10476	CSPI06G25450	Wild cucumber (PI 183967)	carcpiB0271
Carg10476	Cucsa.083340	Cucumber (Gy14) v1	carcgyB0279
Carg10476	CmaCh03G011590	Cucurbita maxima (Rimu)	carcmaB0333
Carg10476	CmoCh03G011490	Cucurbita moschata (Rifu)	carcmoB0336
Carg10476	Lsi01G012260	Bottle gourd (USVL1VR-Ls)	carlsiB214
Carg10476	Cp4.1LG10g04080	Cucurbita pepo (Zucchini)	carcpeB0337
Carg10476	Cp4.1LG19g05010	Cucurbita pepo (Zucchini)	carcpeB0338
Carg10476	CsGy6G024910	Cucumber (Gy14) v2	carcgybB0255
Carg10476	MELO3C024541.2	Melon (DHL92) v3.6.1	carmedB0250
Carg10476	Cla97C04G076840	Watermelon (97103) v2	carwmbB0244
Carg10476	Bhi03G001424	Wax gourd	carwgoB0305

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10476	Silver-seed gourd	carcarB172
Carg10476	Silver-seed gourd	carcarB276
Carg10476	Silver-seed gourd	carcarB280
Carg10476	Silver-seed gourd	carcarB281
Carg10476	Cucumber (Gy14) v2	carcgybB0254
Carg10476	Cucumber (Gy14) v1	carcgyB0282
Carg10476	Cucurbita maxima (Rimu)	carcmaB0334
Carg10476	Cucurbita maxima (Rimu)	carcmaB0331
Carg10476	Cucurbita maxima (Rimu)	carcmaB0332
Carg10476	Cucurbita maxima (Rimu)	carcmaB0335
Carg10476	Cucurbita moschata (Rifu)	carcmoB0334
Carg10476	Cucurbita moschata (Rifu)	carcmoB0335
Carg10476	Cucurbita moschata (Rifu)	carcmoB0337
Carg10476	Cucurbita moschata (Rifu)	carcmoB0338
Carg10476	Cucurbita pepo (Zucchini)	carcpeB0339
Carg10476	Cucurbita pepo (Zucchini)	carcpeB0340
Carg10476	Wild cucumber (PI 183967)	carcpiB0269
Carg10476	Cucumber (Chinese Long) v2	carcuB0265
Carg10476	Cucumber (Chinese Long) v3	carcucB0269
Carg10476	Cucumber (Chinese Long) v3	carcucB0270
Carg10476	Bottle gourd (USVL1VR-Ls)	carlsiB212
Carg10476	Bottle gourd (USVL1VR-Ls)	carlsiB215
Carg10476	Melon (DHL92) v3.5.1	carmeB0241
Carg10476	Melon (DHL92) v3.6.1	carmedB0249
Carg10476	Watermelon (Charleston Gray)	carwcgB0229
Carg10476	Watermelon (Charleston Gray)	carwcgB0231
Carg10476	Watermelon (97103) v1	carwmB0225
Carg10476	Watermelon (97103) v1	carwmB0228
Carg10476	Watermelon (97103) v2	carwmbB0240
Carg10476	Watermelon (97103) v2	carwmbB0242