Carg10381 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10381
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	microtubule-associated protein TORTIFOLIA1
Location	Cucurbita_argyrosperma_scaffold_047 : 702716 .. 703959 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAACAAGGTTGTTCCAATATGAGGTATGTGAACTCTAGAGTACATACACGATCCAGTCTTCCAAGATGGTTTGACCTCATCCTGCCACCGAAGCTTTAGAGATAAATCATAATTTCGACTACTATTATTTCAGCTGCTTGTCTCAGTTTATAAATCACTACAATTTCCTGCCAGTCAACGCATATCGCAGAAAGTATTTATTTATTTTTATTGAATTACAAATTACTGTCCCTCTTCAAAATTGCGTTGTCTGTTACTGTTAGCGCTTGATTATTTGCAATGTTCAATATACTGATCACTCGTTGCAATAGTCTTCAAATTTTACTATCTCACCTGTGTTTTTGTCTTATCTACCATTTAGAACTTCATTGGGAGTTCACAAAACGGAATGCGATCCTTGGAGACGCGTGTGCATGGTCTGGAACGGGCATTGGATGAGATCTCATATGATCTTGCTGTATCAAGTGGAAGGATGTCTTATGCTAACACCCCCACAACCACATGTTGCATGCTACCTGGAGCTGATTTTTTGAGCTCAAGGTTCTGGAAAAGAGCAGAGGGCAGACACTCATCGTCAAAGTTCTCAACTCCCATTGGTGCAACTCCATTGGCTCCAATGCGCAGCAGATCAGGTGATCGCCATGGAGCTAATGTGGATGCTGGATTTATGACTCCAGAGAACCATAGGTTTCAGGTCCAGCGAAGGGGTGGCTTTATGGTGAATCCATTGGCTTTGAGACAAGGTGAACCCAGGGTTGTCTCAAATGCGGCACTTCCTTGAGCAACTGGATCAGAAGGCACTAAAGAGTAATTTCTGAACTTAATTTGCTCGCTCTTTTCCATCTTTTCTTTCCTTCCCACATCATGTGTAGCTCCTCTACCATGGCTGCTTGCCACTTGTGCGAGATGGCCGGATCTAGCATTTACTAAACTTCAAACCATTTTTACTCTTTTTTGTTACAGGCTTACGGCTATGGATTTTCTCATGCCTTTGCCATGGGAATCTAAAGCATTCCTTTGGAACTCTCAAATGATGCAGAAAGCAACTACCATGATTTATGTTGTCGAGGTAATGAATTCCGTTTTGGATTTAAAATATTCTCTGGTATGTCTAAACCAAGTGATCTGAAAAATTTCAGTGAGAAGTCCTAAAAAATTTGAGTGAGCTGTCAAGTTAAGTTTATCCTTTTTCTTTTATTACCTTTTTTTTGGAATTTGATTGAAATTGGAAAAAAGA

mRNA sequence

ATGGATAGAACAAGGTTGTTCCAATATGAGAACTTCATTGGGAGTTCACAAAACGGAATGCGATCCTTGGAGACGCGTGTGCATGGTCTGGAACGGGCATTGGATGAGATCTCATATGATCTTGCTGTATCAAGTGGAAGGATGTCTTATGCTAACACCCCCACAACCACATGTTGCATGCTACCTGGAGCTGATTTTTTGAGCTCAAGGTTCTGGAAAAGAGCAGAGGGCAGACACTCATCGTCAAAGTTCTCAACTCCCATTGGTGCAACTCCATTGGCTCCAATGCGCAGCAGATCAGGTGATCGCCATGGAGCTAATGTGGATGCTGGATTTATGACTCCAGAGAACCATAGGTTTCAGGTCCAGCGAAGGGGTGGCTTTATGGTGAATCCATTGGCTTTGAGACAAGGTGAACCCAGGGTTGTCTCAAATGCGGCACTTCCTTGAGCAACTGGATCAGAAGGCACTAAAGAGCTTACGGCTATGGATTTTCTCATGCCTTTGCCATGGGAATCTAAAGCATTCCTTTGGAACTCTCAAATGATGCAGAAAGCAACTACCATGATTTATGTTGTCGAGGTAATGAATTCCGTTTTGGATTTAAAATATTCTCTGGTATGTCTAAACCAAGTGATCTGAAAAATTTCAGTGAGAAGTCCTAAAAAATTTGAGTGAGCTGTCAAGTTAAGTTTATCCTTTTTCTTTTATTACCTTTTTTTTGGAATTTGATTGAAATTGGAAAAAAGA

Coding sequence (CDS)

ATGGATAGAACAAGGTTGTTCCAATATGAGAACTTCATTGGGAGTTCACAAAACGGAATGCGATCCTTGGAGACGCGTGTGCATGGTCTGGAACGGGCATTGGATGAGATCTCATATGATCTTGCTGTATCAAGTGGAAGGATGTCTTATGCTAACACCCCCACAACCACATGTTGCATGCTACCTGGAGCTGATTTTTTGAGCTCAAGGTTCTGGAAAAGAGCAGAGGGCAGACACTCATCGTCAAAGTTCTCAACTCCCATTGGTGCAACTCCATTGGCTCCAATGCGCAGCAGATCAGGTGATCGCCATGGAGCTAATGTGGATGCTGGATTTATGACTCCAGAGAACCATAGGTTTCAGGTCCAGCGAAGGGGTGGCTTTATGGTGAATCCATTGGCTTTGAGACAAGGTGAACCCAGGGTTGTCTCAAATGCGGCACTTCCTTGA

Protein sequence

MDRTRLFQYENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSSRFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFMVNPLALRQGEPRVVSNAALP

Homology

[Close]

BLAST of Carg10381 vs. NCBI nr
Match: XP_022921762.1 (TORTIFOLIA1-like protein 3 [Cucurbita moschata] >XP_022921763.1 TORTIFOLIA1-like protein 3 [Cucurbita moschata])

HSP 1 Score: 285.8 bits (730), Expect = 8.4e-74
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM
Sbjct: 550 RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSNAALP 150
           VNPLALRQGEPRVVSNAALP
Sbjct: 610 VNPLALRQGEPRVVSNAALP 629

[Close]

BLAST of Carg10381 vs. NCBI nr
Match: XP_022988351.1 (TORTIFOLIA1-like protein 3 [Cucurbita maxima] >XP_022988352.1 TORTIFOLIA1-like protein 3 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 1.6e-72
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAEGR SSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM
Sbjct: 550 RFWKRAEGRQSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSNAALP 150
           VNPLALRQGEPRVVSNAALP
Sbjct: 610 VNPLALRQGEPRVVSNAALP 629

[Close]

BLAST of Carg10381 vs. NCBI nr
Match: XP_023516289.1 (TORTIFOLIA1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 2.7e-72
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRA+GRHSSSKFSTPIGATPLAPMRSRSGD HGANVDAGFMTPENHRFQVQRRGGFM
Sbjct: 550 RFWKRADGRHSSSKFSTPIGATPLAPMRSRSGDPHGANVDAGFMTPENHRFQVQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSNAALP 150
           VNPLALRQGEPRVVSNAALP
Sbjct: 610 VNPLALRQGEPRVVSNAALP 629

[Close]

BLAST of Carg10381 vs. NCBI nr
Match: XP_008453151.1 (PREDICTED: microtubule-associated protein TORTIFOLIA1 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 118/140 (84.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLE ALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAE RHS+SKFSTPI ATPLAP+RSRSGDRHG NVD G M  ENHRF +QRRGGFM
Sbjct: 550 RFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVDVGSMNLENHRFHIQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSNAALP 150
           VNPLA+RQ E R  S+  LP
Sbjct: 610 VNPLAVRQSESRAASDITLP 629

[Close]

BLAST of Carg10381 vs. NCBI nr
Match: XP_004138291.1 (PREDICTED: microtubule-associated protein TORTIFOLIA1 [Cucumis sativus] >KGN63624.1 hypothetical protein Csa_1G007830 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLE ALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAE RHS+SKFSTPI ATPLAP+RSRSGDRHG NVD G    ENHRF +QRRGGFM
Sbjct: 550 RFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVDVGSTNLENHRFHIQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSN 146
           VNPLA+RQ EPR  S+
Sbjct: 610 VNPLAVRQSEPRAASD 625

[Close]

BLAST of Carg10381 vs. TAIR10
Match: AT5G62580.1 (ARM repeat superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-23
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           + F+GSSQ+GMR LETRVHGLE ALDEISYDLAVS+GRMS  ++    CC+LP   F+ S
Sbjct: 477 QRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSS-RNNCCLLPSGSFIKS 536

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           +FWK+ + ++S+S+ ST          R+R       N +   +    HRF      GF+
Sbjct: 537 KFWKKHDSKYSASRMST---------YRNR-------NAETTEIQNSRHRF--NGSPGFI 582

Query: 130 VNPLA 135
           VNPLA
Sbjct: 597 VNPLA 582

[Close]

BLAST of Carg10381 vs. TAIR10
Match: AT1G27210.1 (ARM repeat superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-06
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 33  ALDEISYDLAVSSGRM--SYANTPTTTCCMLPGADFLSSRFWKRAEGR 79
           ALDEIS DLAVS+GR+  + +     +C  LPG +FLS +FW++ E R
Sbjct: 519 ALDEISCDLAVSNGRVPRNSSGCAGDSCSKLPGTEFLSPKFWRKTEER 566

[Close]

BLAST of Carg10381 vs. TAIR10
Match: AT4G27060.1 (ARM repeat superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRM-----------SYANTPT 56
           + FIG S + M +LE RV GLER +++++ DL++SSGR            S+AN PT
Sbjct: 529 QEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAGFGKYNSFANYPT 585

[Close]

BLAST of Carg10381 vs. TAIR10
Match: AT1G50890.1 (ARM repeat superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSG 47
           ++F+G S +GM SLE RV GLER ++E+S ++++ SG
Sbjct: 522 QDFMGGSHDGMISLENRVRGLERIVEEMSREMSIQSG 558

[Close]

BLAST of Carg10381 vs. TAIR10
Match: AT1G59850.1 (ARM repeat superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 0


Query: 9   YENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTC 59
           ++ F+ SS NGM+SLE RV GLE +   IS DL VS       N     C
Sbjct: 446 FQKFMESSHNGMQSLERRVRGLETSFSVISTDLLVSRSITQNGNHKRNAC 495

[Close]

BLAST of Carg10381 vs. Swiss-Prot
Match: sp|Q6NPR6|TORL3_ARATH (TORTIFOLIA1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOR1L3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-22
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           + F+GSSQ+GMR LETRVHGLE ALDEISYDLAVS+GRMS  ++    CC+LP   F+ S
Sbjct: 477 QRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSS-RNNCCLLPSGSFIKS 536

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           +FWK+ + ++S+S+ ST          R+R       N +   +    HRF      GF+
Sbjct: 537 KFWKKHDSKYSASRMST---------YRNR-------NAETTEIQNSRHRF--NGSPGFI 582

Query: 130 VNPLA 135
           VNPLA
Sbjct: 597 VNPLA 582

[Close]

BLAST of Carg10381 vs. Swiss-Prot
Match: sp|Q93ZH1|TORL4_ARATH (TORTIFOLIA1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=TOR1L4 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.4e-05
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 33  ALDEISYDLAVSSGRM--SYANTPTTTCCMLPGADFLSSRFWKRAEGR 79
           ALDEIS DLAVS+GR+  + +     +C  LPG +FLS +FW++ E R
Sbjct: 519 ALDEISCDLAVSNGRVPRNSSGCAGDSCSKLPGTEFLSPKFWRKTEER 566

[Close]

BLAST of Carg10381 vs. Swiss-Prot
Match: sp|Q9T041|TOR1_ARATH (Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana OX=3702 GN=TOR1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.2e-04
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRM-----------SYANTPT 56
           + FIG S + M +LE RV GLER +++++ DL++SSGR            S+AN PT
Sbjct: 529 QEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAGFGKYNSFANYPT 585

[Close]

BLAST of Carg10381 vs. TrEMBL
Match: tr|A0A1S3BWA7|A0A1S3BWA7_CUCME (microtubule-associated protein TORTIFOLIA1 OS=Cucumis melo OX=3656 GN=LOC103493949 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 118/140 (84.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLE ALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAE RHS+SKFSTPI ATPLAP+RSRSGDRHG NVD G M  ENHRF +QRRGGFM
Sbjct: 550 RFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVDVGSMNLENHRFHIQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSNAALP 150
           VNPLA+RQ E R  S+  LP
Sbjct: 610 VNPLAVRQSESRAASDITLP 629

[Close]

BLAST of Carg10381 vs. TrEMBL
Match: tr|A0A0A0LRK0|A0A0A0LRK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G007830 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.2e-61
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           +NFIGSSQNGMRSLETRVHGLE ALDEISYDLAVSSGRMSYANTPTTTCC+LPGADFLSS
Sbjct: 490 QNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSS 549

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKRAE RHS+SKFSTPI ATPLAP+RSRSGDRHG NVD G    ENHRF +QRRGGFM
Sbjct: 550 RFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVDVGSTNLENHRFHIQRRGGFM 609

Query: 130 VNPLALRQGEPRVVSN 146
           VNPLA+RQ EPR  S+
Sbjct: 610 VNPLAVRQSEPRAASD 625

[Close]

BLAST of Carg10381 vs. TrEMBL
Match: tr|A0A2P4JSU0|A0A2P4JSU0_QUESU (Tortifolia1-like protein 3 OS=Quercus suber OX=58331 GN=CFP56_76791 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.8e-33
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           + FIGSSQNGMRSLETRVHGLE ALDEISYDLA+S+GRM+  ++    CC+LPGADFLSS
Sbjct: 190 QRFIGSSQNGMRSLETRVHGLELALDEISYDLALSTGRMTNTDSLRMKCCLLPGADFLSS 249

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           +FW++ EGR+SSS+FST   ATP  P+     D +G   +A  +  EN R ++Q  GGF+
Sbjct: 250 KFWRKTEGRYSSSRFSTS-SATPSVPVMRYRADLNG---NAETVNSENRRIRLQGGGGFI 309

Query: 130 VNPLALRQGEPRVVSNAA 148
           VNPLA  Q   R +S  A
Sbjct: 310 VNPLAEIQSNSRGISEVA 323

[Close]

BLAST of Carg10381 vs. TrEMBL
Match: tr|A0A1U8QAG8|A0A1U8QAG8_NELNU (microtubule-associated protein TORTIFOLIA1-like OS=Nelumbo nucifera OX=4432 GN=LOC104608001 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           + FIGSSQ+GMRSLETRVHGLE ALDEISYDLAVS+GRMS  +T   TCCMLPGA+FLSS
Sbjct: 396 QKFIGSSQSGMRSLETRVHGLEMALDEISYDLAVSTGRMSKTDTAGNTCCMLPGAEFLSS 455

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           RFWKR + R S+S+FS+  G + LA MR  + +   A +   FM  +N RF++Q   GF+
Sbjct: 456 RFWKRTDSRCSTSRFSSSGGTSSLAAMRKMTDNDGNAEL---FML-KNRRFRLQWGSGFV 515

Query: 130 VNPLAL----RQGEPRVVSN 146
           VNPLA       G PRV SN
Sbjct: 516 VNPLAEIHNDSTGSPRVYSN 531

[Close]

BLAST of Carg10381 vs. TrEMBL
Match: tr|A0A2N9EIJ4|A0A2N9EIJ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2332 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.1e-33
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 10  ENFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCMLPGADFLSS 69
           + FIG+SQNGM SLETRVHGLE ALDEISYDLA+SSGRM+ A++    CC+LPGA+FLSS
Sbjct: 489 QRFIGTSQNGMHSLETRVHGLELALDEISYDLALSSGRMTDADSLRMKCCLLPGAEFLSS 548

Query: 70  RFWKRAEGRHSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFM 129
           +FW++ EGR+SSS+FS    ATP  P+     D +G+   A  +  EN RF++Q  GGF+
Sbjct: 549 KFWRKTEGRYSSSRFSAS-SATPSVPVMRHRADLNGS---AETVKSENRRFRLQGGGGFI 608

Query: 130 VNPLALRQGEPRVVSNAA 148
           VNPLA  Q + R +S  A
Sbjct: 609 VNPLAEIQSDSRGISEVA 622

The following BLAST results are available for this feature:

BLAST of Carg10381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921762.1	8.4e-74	99.29	TORTIFOLIA1-like protein 3 [Cucurbita moschata] >XP_022921763.1 TORTIFOLIA1-like...	[more]
XP_022988351.1	1.6e-72	97.86	TORTIFOLIA1-like protein 3 [Cucurbita maxima] >XP_022988352.1 TORTIFOLIA1-like p...	[more]
XP_023516289.1	2.7e-72	97.14	TORTIFOLIA1-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_008453151.1	2.1e-61	84.29	PREDICTED: microtubule-associated protein TORTIFOLIA1 [Cucumis melo]	[more]
XP_004138291.1	1.4e-60	85.29	PREDICTED: microtubule-associated protein TORTIFOLIA1 [Cucumis sativus] >KGN6362...	[more]

BLAST of Carg10381 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62580.1	3.7e-23	47.20	ARM repeat superfamily protein	[more]
AT1G27210.1	4.1e-06	50.00	ARM repeat superfamily protein	[more]
AT4G27060.1	4.5e-05	42.11	ARM repeat superfamily protein	[more]
AT1G50890.1	1.7e-04	48.65	ARM repeat superfamily protein	[more]
AT1G59850.1	2.9e-04	44.00	ARM repeat superfamily protein	[more]

BLAST of Carg10381 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NPR6\|TORL3_ARATH	6.7e-22	47.20	TORTIFOLIA1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOR1L3 PE=2 SV=1	[more]
sp\|Q93ZH1\|TORL4_ARATH	7.4e-05	50.00	TORTIFOLIA1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=TOR1L4 PE=2 SV=1	[more]
sp\|Q9T041\|TOR1_ARATH	8.2e-04	42.11	Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana OX=3702 GN=TO...	[more]

BLAST of Carg10381 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWA7\|A0A1S3BWA7_CUCME	1.4e-61	84.29	microtubule-associated protein TORTIFOLIA1 OS=Cucumis melo OX=3656 GN=LOC1034939...	[more]
tr\|A0A0A0LRK0\|A0A0A0LRK0_CUCSA	9.2e-61	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G007830 PE=4 SV=1	[more]
tr\|A0A2P4JSU0\|A0A2P4JSU0_QUESU	4.8e-33	57.25	Tortifolia1-like protein 3 OS=Quercus suber OX=58331 GN=CFP56_76791 PE=4 SV=1	[more]
tr\|A0A1U8QAG8\|A0A1U8QAG8_NELNU	6.2e-33	59.29	microtubule-associated protein TORTIFOLIA1-like OS=Nelumbo nucifera OX=4432 GN=L...	[more]
tr\|A0A2N9EIJ4\|A0A2N9EIJ4_FAGSY	8.1e-33	56.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2332 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **INTERPRO**
Term	Definition
IPR033337	TORTIFOLIA1/SPIRAL2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005874	microtubule
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0008017	microtubule binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10381-RA	Carg10381-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..104
None	No IPR available	PANTHER	PTHR31355:SF8	SUBFAMILY NOT NAMED	coord: 10..141
IPR033337	MT-associated protein TORTIFOLIA1/SPIRAL2-like	PANTHER	PTHR31355	FAMILY NOT NAMED	coord: 10..141

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10381	Wax gourd	carwgoB0446
Carg10381	Wax gourd	carwgoB0449
Carg10381	Silver-seed gourd	carcarB389
Carg10381	Silver-seed gourd	carcarB392
Carg10381	Silver-seed gourd	carcarB393
Carg10381	Silver-seed gourd	carcarB394
Carg10381	Cucumber (Gy14) v2	carcgybB0371
Carg10381	Cucumber (Gy14) v2	carcgybB0372
Carg10381	Cucumber (Gy14) v1	carcgyB0421
Carg10381	Cucumber (Gy14) v1	carcgyB0423
Carg10381	Cucurbita maxima (Rimu)	carcmaB0510
Carg10381	Cucurbita maxima (Rimu)	carcmaB0512
Carg10381	Cucurbita maxima (Rimu)	carcmaB0514
Carg10381	Cucurbita maxima (Rimu)	carcmaB0517
Carg10381	Cucurbita moschata (Rifu)	carcmoB0493
Carg10381	Cucurbita moschata (Rifu)	carcmoB0494
Carg10381	Cucurbita moschata (Rifu)	carcmoB0496
Carg10381	Cucurbita moschata (Rifu)	carcmoB0499
Carg10381	Cucurbita moschata (Rifu)	carcmoB0501
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0506
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0509
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0511
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0512
Carg10381	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10381	Wild cucumber (PI 183967)	carcpiB0396
Carg10381	Wild cucumber (PI 183967)	carcpiB0397
Carg10381	Cucumber (Chinese Long) v2	carcuB0391
Carg10381	Cucumber (Chinese Long) v2	carcuB0392
Carg10381	Cucumber (Chinese Long) v3	carcucB0395
Carg10381	Cucumber (Chinese Long) v3	carcucB0396
Carg10381	Bottle gourd (USVL1VR-Ls)	carlsiB329
Carg10381	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10381	Melon (DHL92) v3.5.1	carmeB0365
Carg10381	Melon (DHL92) v3.5.1	carmeB0369
Carg10381	Melon (DHL92) v3.6.1	carmedB0371
Carg10381	Melon (DHL92) v3.6.1	carmedB0375
Carg10381	Watermelon (Charleston Gray)	carwcgB0354
Carg10381	Watermelon (Charleston Gray)	carwcgB0357
Carg10381	Watermelon (97103) v1	carwmB0355
Carg10381	Watermelon (97103) v1	carwmB0356
Carg10381	Watermelon (97103) v2	carwmbB0378
Carg10381	Watermelon (97103) v2	carwmbB0380
Carg10381	Watermelon (97103) v2	carwmbB0382