Carg10365 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10365
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	39S ribosomal protein L47, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_047 : 626757 .. 629674 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAACTCTTCTTCTTCTTTTCGCGCCGTCTCCTCCTCCGTTTCAGCAGCTCAGTGTTGCCGCCGCCGCCACCGTCGCTTTCTTTCTTTCGTGGCGCCGCAGCCTCCTTCTTAGCGAGTTTGCTCTGATTTTCTTCTCCCTTGTAACTGGTATTTTCCAATCTCCATCCATGTCTTTCTTCCCACTCGAAAAACACAAATTTGAACTTGTCTAATGAAAAAAGGGAGGAGTTTTAACTTTTCTTATACGATTTTTAATTTTTTTTATTTGATACAATATCCGATTAGCGTAAAATCGAGATGTGGTTTCAGAAATATATAAAATCCACTATTTAATTTCAGAATTTACAACGAAGGGGTAAAATTACACAAAAATTTTCTCCCTTATTGTCTCGCTGTTTATGCTATAGATATGGATATACAGATATAGTCTCACTGTTTTAGTCTTGCAATTCAAGCAGCATTGGTGCAGCCATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTATATTCATATATCGCCTTCAAACTTTGGTCTTCTTTATCAATCTATAAATTTGTAGTTTGGTTCCTTCATTTTGAAGAATTTGTCTCAAAATACTGTTCCTTTGGTGGGTATCTGGTTTGATATCGTGATTCATACCGGTTACAGGTTACTTGGTCCATTTCAAATAATTGGTTACAGGCGGGGACTGTGGATTCTGCTTCATTGATAAAACATCACAAATGTTATATGTTTTATGTTACTGGATTTTACATGATATAATAGATGAAAATGAGTAATTACAAATAACTATGCTGGACAGAGACCTACAGATTTCTCAACACCTGAGAGACACCAAAGTGCTCCAAAAAAAAAAAAATAGTTTCATCATAATTTCAATAGTATATGTTCTTCTTTGTTTTCTTTGATTACAGGTTTTATTTTAGTACAATTACCTGATTGGTTGCATAGTGAAAATAGGAGCAAGGACTTTAAATAGGTGCAGGCGGCATGATTATGTCTGATCTATCTGCATAGCTTCTATACCTGTCAGTGCTTTCTTATTTCTGAATCTGAGTTATGTGTGCCATGTGATCAGCCCTGGAAATTTTATGTGTGTTTTCAGAATTTTTATAAATTGTTCTGTGATGGTTGCTCGTATGATATGATTGTTACGTTAATGTTTTATCATGTTGTCTACTCGTGTGGTTACTCACTTTGAATAAATTTGTGGTACTGGAAAATGCTTGCTCTTTGTCAAAGGCTATTTTGTTTTAGGATACACATTTTTCTCATGTCAATACAGATTTGATCTTTTGCCAAAGTTGTCATATATATATATATATATATATACATGCATGTATGTATATGCCCTACTTCTTAGGAATAAAGGTCTCTTAAAAGTTCAAACAACCAAAAACGAAGTATGATGTAATAGATAATTTATGAGATTTAGAAGGTCGTCCCTCTTGGTCACCGCCTGTACTATATAGGAATGAAATATTCCTAAAGTTGTTCGACCCTAATGTTGTAAGCTTAGATACTTGTGCGAGATCCAAATGCCCGTTGATAACCAAAGAATCCTCATAGTTTGCAATTAGTTTGTGACGATTGCAGTTTATAGTATAATTAAACAACCGCGGGCTGAAGTACAAAACTCACATGTCTTGCAAAATGTAAGGGATAAAAATCCCATTCATTAGAAGTTAGAAAAAGCTCTGATTCTTATGGCTGAAAGTTTGTGCCTTCTTGAAAAGACATTATTGAGATTCTAATTGCAATTCCTATGCTGTTAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAACGTTGGCAGAGATTTTGTATTATATTTAAATTGTAAATACAAGTTCATTTTGCTTTCTCGCTGTATTTGTTTCTTTCTCCTGCTTCAGTTGTGTGATCTCAGGGCTTGTGATGGTTCTCCTTTCACTACTTTTCTATTATAATGTCGATGGTGGTTGTTGGTGCTCGTAATTTAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGACAAAAGGAGGAAGTGTTAGCATGATAATGCACGTCCGATACAACGTCTTATCATTCTGTAATCGAGGAGATATCATTAGAAGAAGCCTCGAAAATTGTTCGATGATTTCTAATAATGTTTTATCAACACTAATCAAAGTTTTGAAGATGTTTTAAATTGTGGCAAAGATTAAACAAGGGCCAAGTTTATTATTCTAGAATGTGTGTGTGTACTGATGCATTGGCTTTGATGAGATTCTGTGCAGCGCCTGTCTTGCTTGCTTATTCCAATTCTATTCCCTACAAGAGGGGGCAGAGCCACATGATTGGATTAGACATGGCGCTGCTTTTTTGATTAGCTTCTTGATCAAGACTGTTTATTCATGAGGGTGAACATAGACAGGGGACCCCCAACATCCTTTCTTTCTTTCTTATTGCTCAGAGTTAAAACGATGCTGCCATGTGGCACGATCTTGTTGGAAGGAAAAAATTGATTAATGCTGTGTCACCCATTAAAATAGTAATGTGTGTTGGAAC

mRNA sequence

AAATAACTCTTCTTCTTCTTTTCGCGCCGTCTCCTCCTCCGTTTCAGCAGCTCAGTGTTGCCGCCGCCGCCACCGTCGCTTTCTTTCTTTCGTGGCGCCGCAGCCTCCTTCTTAGCGAGTTTGCTCTGATTTTCTTCTCCCTTGTAACTGCATTGGTGCAGCCATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGTTGTGTGATCTCAGGGCTTGTGATGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGACAAAAGGAGGAAGTGTTAGCATGATAATGCACGTCCGATACAACGTCTTATCATTCTGTAATCGAGGAGATATCATTAGAAGAAGCCTCGAAAATTGTTCGATGATTTCTAATAATGTTTTATCAACACTAATCAAAGTTTTGAAGATGTTTTAAATTGTGGCAAAGATTAAACAAGGGCCAAGTTTATTATTCTAGAATGTGTGTGTGTACTGATGCATTGGCTTTGATGAGATTCTGTGCAGCGCCTGTCTTGCTTGCTTATTCCAATTCTATTCCCTACAAGAGGGGGCAGAGCCACATGATTGGATTAGACATGGCGCTGCTTTTTTGATTAGCTTCTTGATCAAGACTGTTTATTCATGAGGGTGAACATAGACAGGGGACCCCCAACATCCTTTCTTTCTTTCTTATTGCTCAGAGTTAAAACGATGCTGCCATGTGGCACGATCTTGTTGGAAGGAAAAAATTGATTAATGCTGTGTCACCCATTAAAATAGTAATGTGTGTTGGAAC

Coding sequence (CDS)

ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGTTGTGTGATCTCAGGGCTTGTGATGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGA

Protein sequence

MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCDLRACDGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRSVISEFSTCMQWSLSSR

Homology

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BLAST of Carg10365 vs. NCBI nr
Match: XP_022921695.1 (39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921697.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_023516339.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023516340.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPK+
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKV 108

[Close]

BLAST of Carg10365 vs. NCBI nr
Match: XP_004138121.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_1G005630 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSXXXXXXXXX   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSXXXXXXXXXARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPK+
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV 109

[Close]

BLAST of Carg10365 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 4.2e-42
Identity = 98/108 (90.74%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTRVIGRRFLAA      XXXXXXXXX  GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAXXXXXXXXXXXXXXXXXGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPK+
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKV 108

[Close]

BLAST of Carg10365 vs. NCBI nr
Match: XP_022968794.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968810.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968818.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968826.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 179.9 bits (455), Expect = 7.2e-42
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           M LTR+ GR FLAAARSETS            GYNPLEEFFEA RSP+DDKPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPK+
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKV 109

[Close]

BLAST of Carg10365 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 9.5e-42
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSXXXXXXXXX   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSXXXXXXXXXARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERI K+
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKV 109

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BLAST of Carg10365 vs. TAIR10
Match: AT1G07830.1 (ribosomal protein L29 family protein)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-38
Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTM--GYNPLEEFFEADRSPNDDKPVVYGRSW 60
           MFLTR +GRRFLAA      XXXXXXXXXT+    NPLEEFFE DRS ++DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAXXXXXXXXXXXXXXXTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPERIPK+
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKV 110

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BLAST of Carg10365 vs. Swiss-Prot
Match: sp|Q08DT6|RM47_BOVIN (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 30  TMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR 89
           T+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  
Sbjct: 60  TLSRRGLEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLE 119

Query: 90  QMLNAQNLRFPNPERIPKLCD 111
           Q    Q L  P+PER+ K+ D
Sbjct: 120 QEAKRQRLPMPSPERLEKVVD 139

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BLAST of Carg10365 vs. Swiss-Prot
Match: sp|Q8K2Y7|RM47_MOUSE (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 30  TMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR 89
           T+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  
Sbjct: 60  TLSRKGLEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLE 119

Query: 90  QMLNAQNLRFPNPERIPKLCD 111
           Q    Q L  P+PER+ K+ D
Sbjct: 120 QEAKRQRLPMPSPERLEKVVD 139

[Close]

BLAST of Carg10365 vs. Swiss-Prot
Match: sp|Q9HD33|RM47_HUMAN (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 30  TMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR 89
           T+    LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  
Sbjct: 58  TLSRKGLEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLE 117

Query: 90  QMLNAQNLRFPNPERIPKLCD 111
           Q    Q L  P+PER+ K+ D
Sbjct: 118 QEAKRQRLPMPSPERLDKVVD 137

[Close]

BLAST of Carg10365 vs. Swiss-Prot
Match: sp|P87232|RM04_SCHPO (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 34  NPLEEFFEADRS-PNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML 93
           +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +
Sbjct: 36  HPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEM 95

Query: 94  NAQNLRFP 101
               L  P
Sbjct: 96  KRLQLTIP 103

[Close]

BLAST of Carg10365 vs. Swiss-Prot
Match: sp|Q2H080|RM04_CHAGB (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-07
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 36  LEEFFEADRSPNDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLN 95
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 96  AQNLRFPNPE 104
              L F   E
Sbjct: 159 KSGLGFGEAE 168

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BLAST of Carg10365 vs. TrEMBL
Match: tr|A0A0A0LS48|A0A0A0LS48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSXXXXXXXXX   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSXXXXXXXXXARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPK+
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV 109

[Close]

BLAST of Carg10365 vs. TrEMBL
Match: tr|A0A1S3BWK4|A0A1S3BWK4_CUCME (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.3e-42
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSXXXXXXXXX   GYNPLEEFFEADRSP+D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSXXXXXXXXXARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERI K+
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKV 109

[Close]

BLAST of Carg10365 vs. TrEMBL
Match: tr|A0A164XJ92|A0A164XJ92_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016496 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MFLTR+ GR    AA+SE+S          MG+NPLEEFFE DRSP++DKPVVYGRSWKA
Sbjct: 1   MFLTRIFGRALCTAAKSESSAAAAAAYTSRMGHNPLEEFFETDRSPDEDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           SELRLKSWDDL+KLWYVLLKEKNMLMTQRQMLN+QNLRFPNPERIPK+
Sbjct: 61  SELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNSQNLRFPNPERIPKV 108

[Close]

BLAST of Carg10365 vs. TrEMBL
Match: tr|W9S880|W9S880_9ROSA (39S ribosomal protein L47 OS=Morus notabilis OX=981085 GN=L484_004938 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 87/109 (79.82%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXT-MGYNPLEEFFEADRSPNDDKPVVYGRSWK 60
           MFL+R IGR FLAAA+SETS            GYNPLEEFFE DRSP DDKPVVYGRSWK
Sbjct: 1   MFLSRYIGRTFLAAAKSETSVAAAAATSSVRTGYNPLEEFFEVDRSPEDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           ASELRLKSWDDL KLWYVLLKEKNMLMTQRQML+AQNLRFP+PERIPK+
Sbjct: 61  ASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLHAQNLRFPSPERIPKV 109

[Close]

BLAST of Carg10365 vs. TrEMBL
Match: tr|A9PBH0|A9PBH0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G111100v3 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 82/108 (75.93%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MFLTRVIGRRFLAAARSETSXXXXXXXXXTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60
           MF+TR IGR  LAAA+SET          T G+NPLEEFFEADRS ++DKP+VYGRSWKA
Sbjct: 1   MFMTRFIGRTLLAAAKSETHAASAAAATATSGHNPLEEFFEADRSQDEDKPIVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKL 109
           SELRLKSWDDL KLWYVLLKEKNMLMTQRQML+AQN RFPNPER+PK+
Sbjct: 61  SELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLHAQNFRFPNPERLPKV 108

The following BLAST results are available for this feature:

BLAST of Carg10365 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921695.1	6.8e-48	99.07	39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39...	[more]
XP_004138121.1	2.5e-42	91.74	PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602....	[more]
XP_022988417.1	4.2e-42	90.74	39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ...	[more]
XP_022968794.1	7.2e-42	82.57	39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1...	[more]
XP_008453113.1	9.5e-42	91.74	PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]	[more]

BLAST of Carg10365 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07830.1	5.9e-38	79.09	ribosomal protein L29 family protein	[more]

BLAST of Carg10365 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q08DT6\|RM47_BOVIN	6.3e-13	48.15	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
sp\|Q8K2Y7\|RM47_MOUSE	6.3e-13	48.15	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
sp\|Q9HD33\|RM47_HUMAN	2.4e-12	46.91	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
sp\|P87232\|RM04_SCHPO	1.8e-07	42.65	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]
sp\|Q2H080\|RM04_CHAGB	3.9e-07	42.86	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]

BLAST of Carg10365 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS48\|A0A0A0LS48_CUCSA	1.6e-42	91.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=4 SV=1	[more]
tr\|A0A1S3BWK4\|A0A1S3BWK4_CUCME	6.3e-42	91.74	39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926...	[more]
tr\|A0A164XJ92\|A0A164XJ92_DAUCA	1.5e-40	76.85	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016496 ...	[more]
tr\|W9S880\|W9S880_9ROSA	2.6e-40	79.82	39S ribosomal protein L47 OS=Morus notabilis OX=981085 GN=L484_004938 PE=4 SV=1	[more]
tr\|A9PBH0\|A9PBH0_POPTR	1.3e-39	75.93	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G111100v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005761	mitochondrial ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR010729	Ribosomal_L47_mit
IPR038340	MRP-L47_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005761	mitochondrial ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10365-RA	Carg10365-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	G3DSA:1.20.1280.190		coord: 30..110 e-value: 1.7E-19 score: 71.7
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 36..108 e-value: 1.9E-26 score: 91.9
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 3..107
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 61..108 e-value: 5.61203E-5 score: 37.4671

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10365	Cla019173	Watermelon (97103) v1	carwmB0356
Carg10365	Csa1G005630	Cucumber (Chinese Long) v2	carcuB0391
Carg10365	MELO3C017111	Melon (DHL92) v3.5.1	carmeB0369
Carg10365	ClCG06G016810	Watermelon (Charleston Gray)	carwcgB0357
Carg10365	CSPI01G01640	Wild cucumber (PI 183967)	carcpiB0396
Carg10365	Cucsa.197100	Cucumber (Gy14) v1	carcgyB0423
Carg10365	Lsi06G015310	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10365	Cp4.1LG18g08400	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10365	CsGy1G001660	Cucumber (Gy14) v2	carcgybB0371
Carg10365	MELO3C017111.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10365	CsaV3_1G001710	Cucumber (Chinese Long) v3	carcucB0395
Carg10365	Cla97C06G126430	Watermelon (97103) v2	carwmbB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10365	Silver-seed gourd	carcarB389
Carg10365	Silver-seed gourd	carcarB392
Carg10365	Silver-seed gourd	carcarB393
Carg10365	Silver-seed gourd	carcarB394
Carg10365	Cucumber (Gy14) v2	carcgybB0372
Carg10365	Cucumber (Gy14) v1	carcgyB0421
Carg10365	Cucurbita maxima (Rimu)	carcmaB0510
Carg10365	Cucurbita maxima (Rimu)	carcmaB0511
Carg10365	Cucurbita maxima (Rimu)	carcmaB0514
Carg10365	Cucurbita maxima (Rimu)	carcmaB0517
Carg10365	Cucurbita moschata (Rifu)	carcmoB0493
Carg10365	Cucurbita moschata (Rifu)	carcmoB0494
Carg10365	Cucurbita moschata (Rifu)	carcmoB0496
Carg10365	Cucurbita moschata (Rifu)	carcmoB0499
Carg10365	Cucurbita moschata (Rifu)	carcmoB0501
Carg10365	Cucurbita pepo (Zucchini)	carcpeB0506
Carg10365	Cucurbita pepo (Zucchini)	carcpeB0509
Carg10365	Cucurbita pepo (Zucchini)	carcpeB0511
Carg10365	Cucurbita pepo (Zucchini)	carcpeB0512
Carg10365	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10365	Wild cucumber (PI 183967)	carcpiB0397
Carg10365	Cucumber (Chinese Long) v2	carcuB0392
Carg10365	Cucumber (Chinese Long) v3	carcucB0396
Carg10365	Bottle gourd (USVL1VR-Ls)	carlsiB329
Carg10365	Melon (DHL92) v3.5.1	carmeB0365
Carg10365	Melon (DHL92) v3.6.1	carmedB0371
Carg10365	Watermelon (Charleston Gray)	carwcgB0354
Carg10365	Watermelon (97103) v1	carwmB0353
Carg10365	Watermelon (97103) v1	carwmB0355
Carg10365	Watermelon (97103) v2	carwmbB0378
Carg10365	Watermelon (97103) v2	carwmbB0380
Carg10365	Watermelon (97103) v2	carwmbB0383
Carg10365	Wax gourd	carwgoB0443
Carg10365	Wax gourd	carwgoB0444
Carg10365	Wax gourd	carwgoB0449