Carg10279 (gene) Silver-seed gourd

NameCarg10279
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNuclear transcription factor Y subunit C
LocationCucurbita_argyrosperma_scaffold_047 : 201929 .. 202591 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

mRNA sequence

ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Coding sequence (CDS)

ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Protein sequence

MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR
BLAST of Carg10279 vs. NCBI nr
Match: XP_022987443.1 (nuclear transcription factor Y subunit C-1 [Cucurbita maxima] >XP_023516854.1 nuclear transcription factor Y subunit C-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.5 bits (968), Expect = 3.1e-101
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

BLAST of Carg10279 vs. NCBI nr
Match: XP_022921750.1 (nuclear transcription factor Y subunit C-1-like [Cucurbita moschata])

HSP 1 Score: 376.3 bits (965), Expect = 7.0e-101
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGG+MIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGLMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

BLAST of Carg10279 vs. NCBI nr
Match: XP_022134838.1 (nuclear transcription factor Y subunit C-1-like [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 8.5e-99
Identity = 216/219 (98.63%), Postives = 216/219 (98.63%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQS XXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSXXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

BLAST of Carg10279 vs. NCBI nr
Match: XP_004138046.1 (PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis sativus] >KGN63480.1 hypothetical protein Csa_1G001515 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 5.5e-98
Identity = 212/219 (96.80%), Postives = 214/219 (97.72%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSS  XXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDANNQAQSSPYXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

BLAST of Carg10279 vs. NCBI nr
Match: XP_008464428.1 (PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 5.5e-98
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSS XXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

BLAST of Carg10279 vs. TAIR10
Match: AT3G48590.1 (nuclear factor Y, subunit C1)

HSP 1 Score: 321.2 bits (822), Expect = 4.8e-88
Identity = 169/190 (88.95%), Postives = 175/190 (92.11%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           Q+FW++QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT
Sbjct: 45  QLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 104

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TAS 155
           IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TAS
Sbjct: 105 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTAS 164

Query: 156 GVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPA---AEDGSYASGG 215
           GVPYYYPPMGQPAG PGGMMIGRPAMDP GVY QPPSQAWQSVWQ +    +D SY SGG
Sbjct: 165 GVPYYYPPMGQPAG-PGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGG 224

Query: 216 SSGQGNLDGQ 220
           SSGQGNLDGQ
Sbjct: 225 SSGQGNLDGQ 233

BLAST of Carg10279 vs. TAIR10
Match: AT5G63470.1 (nuclear factor Y, subunit C4)

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-71
Identity = 147/192 (76.56%), Postives = 153/192 (79.69%), Query Frame = 0

Query: 37  MFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 96
           MFW++QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI
Sbjct: 59  MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 118

Query: 97  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI------KDEAGLGGMVGAT 156
           RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EI                   
Sbjct: 119 RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIXXXXXXXXXXXXXXXXXXX 178

Query: 157 ASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAA---EDGSYAS 216
                     MGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY S
Sbjct: 179 XXXXXXXXXXMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGS 238

Query: 217 GGSSGQGNLDGQ 220
           GGSSG GNLD Q
Sbjct: 239 GGSSGHGNLDSQ 249

BLAST of Carg10279 vs. TAIR10
Match: AT1G54830.2 (nuclear factor Y, subunit C3)

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-49
Identity = 105/166 (63.25%), Postives = 121/166 (72.89%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           Q FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT
Sbjct: 50  QSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELT 109

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA-GLGGMVGATASGV 155
           +RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G 
Sbjct: 110 LRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGY 169

Query: 156 PY-YYPPMGQPAGPPGGMM-----------IGRPAMDPTGVYAQPP 189
           PY Y PP   P G PG +M           +G+P     G   Q P
Sbjct: 170 PYGYLPPGTAPIGNPGMVMGXXXXXXXXXXMGQPMWQQPGPEQQDP 215

BLAST of Carg10279 vs. TAIR10
Match: AT1G56170.1 (nuclear factor Y, subunit C2)

HSP 1 Score: 191.0 bits (484), Expect = 7.5e-49
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 0

Query: 37  MFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 96
           MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+
Sbjct: 57  MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTL 116

Query: 97  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG---GMVGATASG 156
           R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E GLG   G + +    
Sbjct: 117 RAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE-GLGVTKGTIPSVVGS 176

Query: 157 VPYYY 159
            PYYY
Sbjct: 177 PPYYY 180

BLAST of Carg10279 vs. TAIR10
Match: AT1G08970.4 (nuclear factor Y, subunit C9)

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-40
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           Q FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT
Sbjct: 60  QAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELT 119

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 131
           +RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVD
Sbjct: 120 LRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVD 154

BLAST of Carg10279 vs. Swiss-Prot
Match: sp|Q9SMP0|NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 8.7e-87
Identity = 169/190 (88.95%), Postives = 175/190 (92.11%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           Q+FW++QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT
Sbjct: 45  QLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 104

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TAS 155
           IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TAS
Sbjct: 105 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTAS 164

Query: 156 GVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPA---AEDGSYASGG 215
           GVPYYYPPMGQPAG PGGMMIGRPAMDP GVY QPPSQAWQSVWQ +    +D SY SGG
Sbjct: 165 GVPYYYPPMGQPAG-PGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGG 224

Query: 216 SSGQGNLDGQ 220
           SSGQGNLDGQ
Sbjct: 225 SSGQGNLDGQ 233

BLAST of Carg10279 vs. Swiss-Prot
Match: sp|Q9FMV5|NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-70
Identity = 147/192 (76.56%), Postives = 153/192 (79.69%), Query Frame = 0

Query: 37  MFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 96
           MFW++QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI
Sbjct: 59  MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 118

Query: 97  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI------KDEAGLGGMVGAT 156
           RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EI                   
Sbjct: 119 RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIXXXXXXXXXXXXXXXXXXX 178

Query: 157 ASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAA---EDGSYAS 216
                     MGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY S
Sbjct: 179 XXXXXXXXXXMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGS 238

Query: 217 GGSSGQGNLDGQ 220
           GGSSG GNLD Q
Sbjct: 239 GGSSGHGNLDSQ 249

BLAST of Carg10279 vs. Swiss-Prot
Match: sp|Q9ZVL3|NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-48
Identity = 105/166 (63.25%), Postives = 121/166 (72.89%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           Q FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT
Sbjct: 50  QSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELT 109

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA-GLGGMVGATASGV 155
           +RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE  G  G   ATA+G 
Sbjct: 110 LRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGY 169

Query: 156 PY-YYPPMGQPAGPPGGMM-----------IGRPAMDPTGVYAQPP 189
           PY Y PP   P G PG +M           +G+P     G   Q P
Sbjct: 170 PYGYLPPGTAPIGNPGMVMGXXXXXXXXXXMGQPMWQQPGPEQQDP 215

BLAST of Carg10279 vs. Swiss-Prot
Match: sp|Q8LCG7|NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-47
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 0

Query: 37  MFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 96
           MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+
Sbjct: 57  MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTL 116

Query: 97  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG---GMVGATASG 156
           R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E GLG   G + +    
Sbjct: 117 RAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE-GLGVTKGTIPSVVGS 176

Query: 157 VPYYY 159
            PYYY
Sbjct: 177 PPYYY 180

BLAST of Carg10279 vs. Swiss-Prot
Match: sp|A6BLW4|NFYC2_ORYSJ (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQ--VNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILE 95
           Q FW++QRQE E+   +DFKNHQLPLARIKKIMKADEDVRMISAEAP+LFAKACELFILE
Sbjct: 47  QAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILE 106

Query: 96  LTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAG 143
           LTIRSWLHAEENKRRTLQ+ND+AAAI RTD+FDFLVDIVPR+E K+E G
Sbjct: 107 LTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAKEEPG 155

BLAST of Carg10279 vs. TrEMBL
Match: tr|A0A1S3CLW7|A0A1S3CLW7_CUCME (nuclear transcription factor Y subunit C-1 OS=Cucumis melo OX=3656 GN=LOC103502320 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.7e-98
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSS XXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

BLAST of Carg10279 vs. TrEMBL
Match: tr|A0A0A0LNK7|A0A0A0LNK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001515 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.7e-98
Identity = 212/219 (96.80%), Postives = 214/219 (97.72%), Query Frame = 0

Query: 1   MESNNQAQSSXXXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSS  XXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDANNQAQSSPYXXXXXXXXXXXXXXXXXXXXXXXQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

BLAST of Carg10279 vs. TrEMBL
Match: tr|A0A2P5FDC1|A0A2P5FDC1_9ROSA (Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC3 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.6e-93
Identity = 174/184 (94.57%), Postives = 177/184 (96.20%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           QMFWS+QR EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT
Sbjct: 55  QMFWSYQRHEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 114

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVP 155
           IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA LGGMVGATASGVP
Sbjct: 115 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAALGGMVGATASGVP 174

Query: 156 YYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGN 215
           YYYPPMGQPAG PGGMMIGRPA+DPTGVY QPPSQAWQSVWQ  A+DGSY SGGSSGQGN
Sbjct: 175 YYYPPMGQPAGAPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTTADDGSYGSGGSSGQGN 234

Query: 216 LDGQ 220
           LDGQ
Sbjct: 235 LDGQ 238

BLAST of Carg10279 vs. TrEMBL
Match: tr|A0A2P6P4X8|A0A2P6P4X8_ROSCH (Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0190051 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 7.9e-93
Identity = 175/186 (94.09%), Postives = 180/186 (96.77%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           QMFW++QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAP+LFAKACELFILELT
Sbjct: 55  QMFWNYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELT 114

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG--GMVGATASG 155
           IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG  GMVG TASG
Sbjct: 115 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGAVGMVGTTASG 174

Query: 156 VPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQ 215
           VPYYYPP+GQPAG PGGMMIGRPAMDPTGVYAQPPSQAWQSVWQ AA+DGSY SGGSSGQ
Sbjct: 175 VPYYYPPIGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAADDGSYGSGGSSGQ 234

Query: 216 GNLDGQ 220
           GNLDGQ
Sbjct: 235 GNLDGQ 240

BLAST of Carg10279 vs. TrEMBL
Match: tr|A0A2C9UJY2|A0A2C9UJY2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050900 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.0e-92
Identity = 178/186 (95.70%), Postives = 180/186 (96.77%), Query Frame = 0

Query: 36  QMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 95
           QMFWS+QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT
Sbjct: 43  QMFWSYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELT 102

Query: 96  IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVP 155
           IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVP
Sbjct: 103 IRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVP 162

Query: 156 YYYPPMGQPAGP-PGGMMIGRPAMDPTGVYAQPPSQAWQSVWQ-PAAEDGSYASGGSSGQ 215
           YYYPP+G PAGP PGGMMIGRPAMDPTGVY QPPSQAWQSVWQ  AAEDGSY SGGSSGQ
Sbjct: 163 YYYPPIGHPAGPGPGGMMIGRPAMDPTGVYVQPPSQAWQSVWQRAAAEDGSYGSGGSSGQ 222

Query: 216 GNLDGQ 220
           GNLDGQ
Sbjct: 223 GNLDGQ 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022987443.13.1e-101100.00nuclear transcription factor Y subunit C-1 [Cucurbita maxima] >XP_023516854.1 nu... [more]
XP_022921750.17.0e-10199.54nuclear transcription factor Y subunit C-1-like [Cucurbita moschata][more]
XP_022134838.18.5e-9998.63nuclear transcription factor Y subunit C-1-like [Momordica charantia][more]
XP_004138046.15.5e-9896.80PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis sativus] >KG... [more]
XP_008464428.15.5e-9897.26PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G48590.14.8e-8888.95nuclear factor Y, subunit C1[more]
AT5G63470.11.1e-7176.56nuclear factor Y, subunit C4[more]
AT1G54830.21.5e-4963.25nuclear factor Y, subunit C3[more]
AT1G56170.17.5e-4974.40nuclear factor Y, subunit C2[more]
AT1G08970.46.4e-4082.11nuclear factor Y, subunit C9[more]
Match NameE-valueIdentityDescription
sp|Q9SMP0|NFYC1_ARATH8.7e-8788.95Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9FMV5|NFYC4_ARATH2.0e-7076.56Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9ZVL3|NFYC3_ARATH2.7e-4863.25Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q8LCG7|NFYC2_ARATH1.4e-4774.40Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|A6BLW4|NFYC2_ORYSJ4.4e-4683.49Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CLW7|A0A1S3CLW7_CUCME3.7e-9897.26nuclear transcription factor Y subunit C-1 OS=Cucumis melo OX=3656 GN=LOC1035023... [more]
tr|A0A0A0LNK7|A0A0A0LNK7_CUCSA3.7e-9896.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001515 PE=4 SV=1[more]
tr|A0A2P5FDC1|A0A2P5FDC1_9ROSA4.6e-9394.57Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC... [more]
tr|A0A2P6P4X8|A0A2P6P4X8_ROSCH7.9e-9394.09Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=Rc... [more]
tr|A0A2C9UJY2|A0A2C9UJY2_MANES1.0e-9295.70Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050900 PE=4 SV=... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10279-RACarg10279-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 56..119
e-value: 1.5E-20
score: 73.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 24..134
e-value: 1.2E-45
score: 156.5
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 29..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..220
NoneNo IPR availablePANTHERPTHR10252:SF71NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-2coord: 25..189
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 25..189

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10279Carg24539Silver-seed gourdcarcarB391