Carg10191 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10191
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	tubulin-folding cofactor D
Location	Cucurbita_argyrosperma_scaffold_039 : 1013993 .. 1015938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGGTTTCTAGTAGAGATGTGTACTGGCCTCCTTGTTTTCTCTCTGAAGTGTTTCCTTCATTACATCTGTGAAGAGGAAGACATGGTGTTTGAGATGATATGAATTTAATGGCATGGCGGTAGGCTGGTGGCCAAGATGGCTATGGTGGGGGTCCTAATGGTATTTATGCCGCTGGTGAAGGTGGTTCTGTTTCAGGAATCAAGATTCTGGGAGCTGAACCAATTTTCTGAAATATTTCCTTGCTGTTTTATTCTGATGAAGGGTTAAACTTCCTGGCAGGCATTACATTATGATATTCGAAGAGGTCCACCTAGTGTTGGATCTAATGAACGTGATGAAATTTTCTGAAATATTTCCTTGCTGTTGCATACGTTTGTGTTGAGCATTTGGCCGTGCCTACCATCGCACAGACATGAGAGAGATTTTGAGGCAACTTGCTCCACGTCTTCTCACAGTTGCTTGTTATGATCGTGAGGTATTAAACTGTGAACTTATTAATTTTAATTTTTGACCACTACTAACTGTGGAATTATTGTTCCTATACGTCCGTTCTTATTAATTTTAATTTTAAAACGCGTTTGCTAGGGAGAAGTTTCCACACCCTTACAAAGAATGCTTCGTTCCCCTTTTCAACCGACGTGAGATCTCACAATCCACCCCTAGGGGCCTAATGTCCTCGCTGACACACCTCCCAGTGTCTGGTTCTGATACCATTTGTAACGGCTCAAGTCTACTGCTAACCGATATTGTTCTTTTTGGGCTTTCTCTTTTGGACTTCTCCTCAAGATTTTAAAAATGTGTCCGATAGGGAAAGGTTTCACACCCCCACCTTTTCAAGTCAAGGAAAATGTTAGAAAACAAGGCAATAATCCACATGGCATTGATAGAGTGAATATTGCTGACTATTTTTCACTTGCGTCTCGAGTAACTTAATATCTGAAAGTTTCTGTGTGTATAGCTCGATACGAGGGGTGTCTCCTTCCATTTATTGATAAACTACTGTGCAACAAAATATGTTATTAGGTATTCTTTAATTTTTCCAACATACTGTTTTTTTTCTTTTCTTTCTAATGAAATTTCAGTCTCTTATCCATTGAAAAAAATGAGTTGACATTTTAAACTTTATTTTATAGATGTTTCTCTTTGTAAATTTTTTGTTCCTGCTCATGCGCTCTATTAATATTAAACTTTTGGTGCATTATGATCCTTAAGTTCGTCTGTAGCTTTGGCACATGACAATATATAGAATTCTGATATTCTGTTCTGTTATGTTAGTGAGGATCTGGTAAAACCGTAAAAGAACATAGGATTTAGAAAATGTTTAATTTCTTTAATTGCCTTTGTTCAAGAATTGTACTAGGCATTACCTGATAGGTGTTGATTAACATATAATGTGCTTGTGCAAATTTTGAAGTTGATGGATTGAGAAATTTTTTGAAAGAAGATTAATTCCATTTTGGCTGTTCTTTCCCTAGTCATAATACTTTTGCTCATTCTTGATTTCGTTGATGTTTTAACCAGAAGGTCTTTGATTTTTCTACACTCGATGGTTTGAAGTTGGGATCATAGTTGTCTATACACAATTCATTTTTAGGATATTGGCACTTATAAGTTTTAGAATTGAGGGATATTTCCCACTCTTCAACCCTTGTGATTGATAAGCATCGCAGACAGAATTTTATTGTCAAATGTGTTTGCAATCGTTACTCATAAAATGAGAAGTTCATTTTCTCTTTAGCAGTAAACCCTGTGACGTGTTTTCTCGGTTTTGTTGGGTTATTTTAATGGCTTATTACTCATGGTCTGTATGTTTCAGGATAAAGGCTTGAGAGAACTTGCTGCAGACGTCCTTTCAGCACCTGTAAAATGTAACGGCTCAAGTCCACCACTAGCTGATATTGTTCTTTTTGGACTTCCGATCTTTCCCTCTGTTGGATGA

mRNA sequence

ATGGATAGGGTTTCTAGTAGAGATGTGTACTGGCCTCCTTGTTTTCTCTCTGAAGCTGGTGGCCAAGATGGCTATGGTGGGGGTCCTAATGGTATTTATGCCGCTGGTGAAGGTGGTTCTGCATTACATTATGATATTCGAAGAGGTCCACCTAGTGTTGGATCTAATGAACACATGAGAGAGATTTTGAGGCAACTTGCTCCACGTCTTCTCACAGTTGCTTGTTATGATCGTGAGGATAAAGGCTTGAGAGAACTTGCTGCAGACGTCCTTTCAGCACCTGTAAAATGTAACGGCTCAAGTCCACCACTAGCTGATATTGTTCTTTTTGGACTTCCGATCTTTCCCTCTGTTGGATGA

Coding sequence (CDS)

ATGGATAGGGTTTCTAGTAGAGATGTGTACTGGCCTCCTTGTTTTCTCTCTGAAGCTGGTGGCCAAGATGGCTATGGTGGGGGTCCTAATGGTATTTATGCCGCTGGTGAAGGTGGTTCTGCATTACATTATGATATTCGAAGAGGTCCACCTAGTGTTGGATCTAATGAACACATGAGAGAGATTTTGAGGCAACTTGCTCCACGTCTTCTCACAGTTGCTTGTTATGATCGTGAGGATAAAGGCTTGAGAGAACTTGCTGCAGACGTCCTTTCAGCACCTGTAAAATGTAACGGCTCAAGTCCACCACTAGCTGATATTGTTCTTTTTGGACTTCCGATCTTTCCCTCTGTTGGATGA

Protein sequence

MDRVSSRDVYWPPCFLSEAGGQDGYGGGPNGIYAAGEGGSALHYDIRRGPPSVGSNEHMREILRQLAPRLLTVACYDREDKGLRELAADVLSAPVKCNGSSPPLADIVLFGLPIFPSVG

Homology

[Close]

BLAST of Carg10191 vs. NCBI nr
Match: XP_023549163.1 (uncharacterized protein LOC111807603 [Cucurbita pepo subsp. pepo] >XP_023549164.1 uncharacterized protein LOC111807603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 59  MREILRQLAPRLLTVACYDREDKGLRELAADVLSAPVKCNGSSPPLADIVLFGLPIFPS 118
           MREIL+QLAPRLLTVACYDREDKGLREL ADVLSA VKCN SSPPL DIVLFGLP FPS
Sbjct: 1   MREILKQLAPRLLTVACYDREDKGLRELVADVLSASVKCNDSSPPLVDIVLFGLPDFPS 59

[Close]

BLAST of Carg10191 vs. NCBI nr
Match: XP_024925215.1 (tubulin-folding cofactor D-like [Ziziphus jujuba])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 43/77 (55.84%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDRE--- 97
           ALHYD+RRGP SVGS                  +  +R IL QLAP LLTV CYDRE   
Sbjct: 484 ALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYHHADIRNILDQLAPHLLTVGCYDRECHQ 543

[Close]

BLAST of Carg10191 vs. NCBI nr
Match: PNT03377.1 (hypothetical protein POPTR_014G067400v3 [Populus trichocarpa])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 43/94 (45.74%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGSNEH------------------MREILRQLAPRLLTVACYDRE--- 97
           ALHYDIRRGP SVGS+                    M+ +L QLAP LLTVACYDRE   
Sbjct: 471 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYYHVDMKYVLEQLAPHLLTVACYDREYEG 530

[Close]

BLAST of Carg10191 vs. NCBI nr
Match: XP_022155729.1 (tubulin-folding cofactor D [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 42/86 (48.84%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYD+RRGP SVGS                  +  MREIL+QLAP LLTVACYDRE   
Sbjct: 483 ALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYHHTDMREILKQLAPHLLTVACYDRE-VN 542

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   GS P   DIV
Sbjct: 543 CRRAAAAAFQENVGRQGSYPHGIDIV 567

[Close]

BLAST of Carg10191 vs. NCBI nr
Match: XP_004145065.1 (PREDICTED: tubulin-folding cofactor D [Cucumis sativus] >KGN46255.1 hypothetical protein Csa_6G078500 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 42/86 (48.84%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYDIRRGP SVGS                  +  MREIL+QLAP LLTVACYDRE   
Sbjct: 484 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYHHTDMREILKQLAPHLLTVACYDRE-VN 543

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 544 CRRAAAAAFQENVGRQGNYPHGIDIV 568

[Close]

BLAST of Carg10191 vs. TAIR10
Match: AT3G60740.1 (ARM repeat superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVG------------------SNEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYD+RRGP SVG                  S++ M+ +L QLAP LL V  +DRE   
Sbjct: 484 ALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYSHKDMKNVLDQLAPDLLIVGSFDRE-VN 543

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 544 CRRAAAAAFQENVGRQGNYPHGIDIV 568

[Close]

BLAST of Carg10191 vs. Swiss-Prot
Match: sp|Q8L5R3|TBCD_ARATH (Tubulin-folding cofactor D OS=Arabidopsis thaliana OX=3702 GN=TFCD PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVG------------------SNEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYD+RRGP SVG                  S++ M+ +L QLAP LL V  +DRE   
Sbjct: 484 ALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYSHKDMKNVLDQLAPDLLIVGSFDRE-VN 543

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 544 CRRAAAAAFQENVGRQGNYPHGIDIV 568

[Close]

BLAST of Carg10191 vs. TrEMBL
Match: tr|A0A2K1XRG8|A0A2K1XRG8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G067400v3 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-08
Identity = 43/94 (45.74%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGSNEH------------------MREILRQLAPRLLTVACYDRE--- 97
           ALHYDIRRGP SVGS+                    M+ +L QLAP LLTVACYDRE   
Sbjct: 471 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYYHVDMKYVLEQLAPHLLTVACYDREYEG 530

[Close]

BLAST of Carg10191 vs. TrEMBL
Match: tr|A0A1S3CD08|A0A1S3CD08_CUCME (tubulin-folding cofactor D OS=Cucumis melo OX=3656 GN=LOC103499011 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 42/86 (48.84%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYDIRRGP SVGS                  +  MREIL+QLAP LLTVACYDRE   
Sbjct: 478 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYHHTDMREILKQLAPHLLTVACYDRE-VN 537

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 538 CRRAAAAAFQENVGRQGNYPHGIDIV 562

[Close]

BLAST of Carg10191 vs. TrEMBL
Match: tr|A0A0A0K913|A0A0A0K913_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 42/86 (48.84%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYDIRRGP SVGS                  +  MREIL+QLAP LLTVACYDRE   
Sbjct: 484 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYHHTDMREILKQLAPHLLTVACYDRE-VN 543

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 544 CRRAAAAAFQENVGRQGNYPHGIDIV 568

[Close]

BLAST of Carg10191 vs. TrEMBL
Match: tr|A0A2P4LTQ9|A0A2P4LTQ9_QUESU (Tubulin-folding cofactor d OS=Quercus suber OX=58331 GN=CFP56_04781 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-07
Identity = 42/86 (48.84%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYDIRRGP SVGS                  +E MR IL QLAP LLTVACYDRE   
Sbjct: 488 ALHYDIRRGPHSVGSHVRDAAAYVCWAFGRAYYHEDMRAILEQLAPHLLTVACYDRE-VN 547

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 548 CRRAAAAAFQENVGRQGNYPHGIDIV 572

[Close]

BLAST of Carg10191 vs. TrEMBL
Match: tr|A0A2C9VUT2|A0A2C9VUT2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G047400 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07
Identity = 40/86 (46.51%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 41  ALHYDIRRGPPSVGS------------------NEHMREILRQLAPRLLTVACYDREDKG 100
           ALHYDIRRGP S+GS                  +  MRE+L QLAP LLTVACYDRE   
Sbjct: 481 ALHYDIRRGPHSIGSHVRDAAAYVCWAFGRAYYHTDMREVLEQLAPHLLTVACYDRE-VN 540

Query: 101 LRELAADVLSAPVKCNGSSPPLADIV 109
            R  AA      V   G+ P   DIV
Sbjct: 541 CRRAAAAAFQENVGRQGNYPHGIDIV 565

The following BLAST results are available for this feature:

BLAST of Carg10191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549163.1	2.5e-20	89.83	uncharacterized protein LOC111807603 [Cucurbita pepo subsp. pepo] >XP_023549164....	[more]
XP_024925215.1	1.5e-09	55.84	tubulin-folding cofactor D-like [Ziziphus jujuba]	[more]
PNT03377.1	1.1e-07	45.74	hypothetical protein POPTR_014G067400v3 [Populus trichocarpa]	[more]
XP_022155729.1	2.4e-07	48.84	tubulin-folding cofactor D [Momordica charantia]	[more]
XP_004145065.1	4.1e-07	48.84	PREDICTED: tubulin-folding cofactor D [Cucumis sativus] >KGN46255.1 hypothetical...	[more]

BLAST of Carg10191 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60740.1	1.9e-06	39.53	ARM repeat superfamily protein	[more]

BLAST of Carg10191 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L5R3\|TBCD_ARATH	3.5e-05	39.53	Tubulin-folding cofactor D OS=Arabidopsis thaliana OX=3702 GN=TFCD PE=2 SV=1	[more]

BLAST of Carg10191 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K1XRG8\|A0A2K1XRG8_POPTR	7.2e-08	45.74	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G067400v3 PE=...	[more]
tr\|A0A1S3CD08\|A0A1S3CD08_CUCME	2.7e-07	48.84	tubulin-folding cofactor D OS=Cucumis melo OX=3656 GN=LOC103499011 PE=4 SV=1	[more]
tr\|A0A0A0K913\|A0A0A0K913_CUCSA	2.7e-07	48.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078500 PE=4 SV=1	[more]
tr\|A0A2P4LTQ9\|A0A2P4LTQ9_QUESU	4.7e-07	48.84	Tubulin-folding cofactor d OS=Quercus suber OX=58331 GN=CFP56_04781 PE=4 SV=1	[more]
tr\|A0A2C9VUT2\|A0A2C9VUT2_MANES	8.0e-07	46.51	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G047400 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10191-RA	Carg10191-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10191	Cla006973	Watermelon (97103) v1	carwmB0221
Carg10191	Csa6G078500	Cucumber (Chinese Long) v2	carcuB0259
Carg10191	MELO3C022488	Melon (DHL92) v3.5.1	carmeB0231
Carg10191	ClCG06G000530	Watermelon (Charleston Gray)	carwcgB0223
Carg10191	CSPI06G06000	Wild cucumber (PI 183967)	carcpiB0263
Carg10191	Cucsa.362650	Cucumber (Gy14) v1	carcgyB0271
Carg10191	CmaCh08G009930	Cucurbita maxima (Rimu)	carcmaB0319
Carg10191	CmoCh08G009640	Cucurbita moschata (Rifu)	carcmoB0324
Carg10191	CmoCh17G000440	Cucurbita moschata (Rifu)	carcmoB0320
Carg10191	Lsi09G018890	Bottle gourd (USVL1VR-Ls)	carlsiB203
Carg10191	Cp4.1LG17g02970	Cucurbita pepo (Zucchini)	carcpeB0325
Carg10191	CsGy6G005990	Cucumber (Gy14) v2	carcgybB0248
Carg10191	MELO3C022488.2	Melon (DHL92) v3.6.1	carmedB0238
Carg10191	CsaV3_6G006310	Cucumber (Chinese Long) v3	carcucB0263
Carg10191	Cla97C06G109780	Watermelon (97103) v2	carwmbB0232
Carg10191	Bhi12G002273	Wax gourd	carwgoB0279

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10191	Carg11052	Silver-seed gourd	carcarB269

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10191	Watermelon (97103) v2	carwmbB0229
Carg10191	Wax gourd	carwgoB0282
Carg10191	Cucurbita pepo (Zucchini)	carcpeB0327
Carg10191	Silver-seed gourd	carcarB261
Carg10191	Silver-seed gourd	carcarB266
Carg10191	Silver-seed gourd	carcarB267
Carg10191	Cucumber (Gy14) v2	carcgybB0245
Carg10191	Cucumber (Gy14) v1	carcgyB0269
Carg10191	Cucurbita maxima (Rimu)	carcmaB0313
Carg10191	Cucurbita maxima (Rimu)	carcmaB0314
Carg10191	Cucurbita maxima (Rimu)	carcmaB0317
Carg10191	Cucurbita maxima (Rimu)	carcmaB0321
Carg10191	Cucurbita moschata (Rifu)	carcmoB0319
Carg10191	Cucurbita moschata (Rifu)	carcmoB0322
Carg10191	Cucurbita moschata (Rifu)	carcmoB0326
Carg10191	Cucurbita pepo (Zucchini)	carcpeB0322
Carg10191	Cucurbita pepo (Zucchini)	carcpeB0323
Carg10191	Cucurbita pepo (Zucchini)	carcpeB0329
Carg10191	Wild cucumber (PI 183967)	carcpiB0261
Carg10191	Cucumber (Chinese Long) v2	carcuB0257
Carg10191	Cucumber (Chinese Long) v3	carcucB0260
Carg10191	Bottle gourd (USVL1VR-Ls)	carlsiB206
Carg10191	Melon (DHL92) v3.5.1	carmeB0236
Carg10191	Watermelon (Charleston Gray)	carwcgB0220
Carg10191	Watermelon (97103) v1	carwmB0218