Carg10083 (gene) Silver-seed gourd

Overview
NameCarg10083
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein ATL16
LocationCucurbita_argyrosperma_scaffold_039 : 275517 .. 276407 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

mRNA sequence

ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

Coding sequence (CDS)

ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

Protein sequence

MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP
Homology
[Close]
BLAST of Carg10083 vs. NCBI nr
Match: XP_022958779.1 (RING-H2 finger protein ATL16-like [Cucurbita moschata])

HSP 1 Score: 588.2 bits (1515), Expect = 1.6e-164
Identity = 292/296 (98.65%), Postives = 295/296 (99.66%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKET+SGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETSSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAV+QSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVQQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]
BLAST of Carg10083 vs. NCBI nr
Match: XP_023548943.1 (RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 577.4 bits (1487), Expect = 2.8e-161
Identity = 289/297 (97.31%), Postives = 293/297 (98.65%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATP HSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPLHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIP+DQ+PSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQSPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATT+D NFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTADMNFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQS-GGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQS GGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 297

[Close]
BLAST of Carg10083 vs. NCBI nr
Match: XP_023006323.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 573.2 bits (1476), Expect = 5.2e-160
Identity = 284/296 (95.95%), Postives = 290/296 (97.97%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATP HSST+VSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPLHSSTSVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQP +PRGLDPSTIQSIPLINYKKPIKET SGGECAVCLTEF+PEE
Sbjct: 61  RFSLSRRREETLILRQPADPRGLDPSTIQSIPLINYKKPIKETASGGECAVCLTEFRPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIP+DQAPSPRDL LNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQAPSPRDLALNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
            ATT+DENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 DATTADENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]
BLAST of Carg10083 vs. NCBI nr
Match: XP_008460634.1 (PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo])

HSP 1 Score: 483.4 bits (1243), Expect = 5.5e-133
Identity = 248/308 (80.52%), Postives = 264/308 (85.71%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS +P HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTSPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRRE+TLILRQ  EPRGLDPS IQSIPLINYKKPI ETT+GGECAVCLTEFQ EE
Sbjct: 61  RFSLSRRREDTLILRQQAEPRGLDPSIIQSIPLINYKKPIGETTTGGECAVCLTEFQTEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP DQAPS RDL LN+G  +
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTDQAPSRRDLALNTGIPI 180

Query: 181 AATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFLV 240
           +A   DENFVVIELG N DRR+PP             F KVTSMGDECI+MREKD+EF+V
Sbjct: 181 SA--GDENFVVIELGGNLDRRQPPGLVSGEVAKSERKFKKVTSMGDECINMREKDEEFIV 240

Query: 241 QPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNG 297
           QPIRRSFSMDSSGDRQLYMAVQAAVR+  GGE+ VE EGCS+RV+RSFFSFGS RGSRN 
Sbjct: 241 QPIRRSFSMDSSGDRQLYMAVQAAVREKSGGENGVEVEGCSSRVKRSFFSFGSGRGSRNA 300

[Close]
BLAST of Carg10083 vs. NCBI nr
Match: XP_004142260.1 (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN61611.1 hypothetical protein Csa_2G178720 [Cucumis sativus])

HSP 1 Score: 479.6 bits (1233), Expect = 7.9e-132
Identity = 249/309 (80.58%), Postives = 263/309 (85.11%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS TP HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTTPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPE 120
           RFSLSRRRE+TLILRQ  EPRGLDPSTIQSIPLINYKKPI E TT+GGECAVCLTEFQ E
Sbjct: 61  RFSLSRRREQTLILRQQAEPRGLDPSTIQSIPLINYKKPINETTTTGGECAVCLTEFQTE 120

Query: 121 EQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSS 180
           EQLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP +QAPS RDL LN  +S
Sbjct: 121 EQLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTNQAPSARDLALN--TS 180

Query: 181 VAATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFL 240
           +  +  DENFVVIELG N DR RPP             F KVTSMGDECI+MREKD+EF+
Sbjct: 181 IPISAGDENFVVIELGGNLDRCRPPELVSGEVAKSERKFKKVTSMGDECINMREKDEEFI 240

Query: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRN 297
           VQPIRRSFSMDSSGDRQLYMAVQAAVR+  GGES VE EGCS+RV+RSFFSFGS RGSRN
Sbjct: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVREKSGGESGVEVEGCSSRVKRSFFSFGSGRGSRN 300

[Close]
BLAST of Carg10083 vs. TAIR10
Match: AT5G43420.1 (RING/U-box superfamily protein)

HSP 1 Score: 255.0 bits (650), Expect = 5.7e-68
Identity = 160/349 (45.85%), Postives = 201/349 (57.59%), Query Frame = 0 

Query: 20  SSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRR---EETLILRQ 79
           +SFPI+AVAVIGI ATAFLLV YY+FVIKCCLNW RI+IL RFSLSRRR   ++ L++  
Sbjct: 32  TSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYS 91

Query: 80  P-VEPRGLDPSTIQSIPLINYKKPI-------------KETTSGGECAVCLTEFQPEEQL 139
           P +  RGLD S I++IP+  +KK               +E     EC+VCL+EFQ EE+L
Sbjct: 92  PELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKL 151

Query: 140 RKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAA 199
           R IP CSHLFHIDCID+WLQNN NCPLCRT +S      P D+  +P   P N    +  
Sbjct: 152 RIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDT-SFPPDRVSAPSTSPEN----LVM 211

Query: 200 TTSDENFVVIELGRNPDRRRPPP------------------------------------- 259
              +  +VVIELG +    R  P                                     
Sbjct: 212 LRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKKLDRGG 271

Query: 260 -------FGKVTSMGDECIDMRE-KDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQS 297
                    K+TSMGDECID+R  KD++F  +QPIRRS SMDSS DRQLY+AVQ A+R++
Sbjct: 272 LPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQEAIRKN 331

[Close]
BLAST of Carg10083 vs. TAIR10
Match: AT1G04360.1 (RING/U-box superfamily protein)

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-62
Identity = 153/350 (43.71%), Postives = 199/350 (56.86%), Query Frame = 0 

Query: 13  PHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETL 72
           P +S++ ++FPI+A+AVIGI ATAFLLV YYIFVIKCCLNW +I+I RR   S  +   +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 73  ILRQPVEPRGLDPSTIQSIPLINYKK------PIKETTSGGECAVCLTEFQPEEQLRKIP 132
           I       RGLD S I++IP+  +KK         ++ +  EC+VCL EFQ +E+LR IP
Sbjct: 92  IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query: 133 ICSHLFHIDCIDIWLQNNPNCPLCRTSISAQ-NWLIPIDQAP-SPRDLPLNSGS----SV 192
            C H+FHIDCIDIWLQ N NCPLCRTS+S + ++ + +  AP SPR+   +S +      
Sbjct: 152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPG 211

Query: 193 AATTSDENFVVIEL------------------------------GRNPDRRRPPP----- 252
                D++FVVIEL                              G +P    P P     
Sbjct: 212 LVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSPLPIKFGN 271

Query: 253 ---------FGKVTSMGDECIDMREKDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQ 297
                    F KVTSMGDECID R KD  F  +QPIRRS SMDSS DRQLY+AVQ  + +
Sbjct: 272 RGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYLAVQEEISR 331

[Close]
BLAST of Carg10083 vs. TAIR10
Match: AT4G17905.1 (RING/U-box superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-20
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 0 

Query: 25  IAVAVIGICATAFLLVGYYIFVIKCCLN---------WQRIEILRRFSLSRRREETLILR 84
           + +A+ GI ATAFLL  YY  V K C N           R +I+   +   R ++     
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 85  QPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPEEQLRKIPICSHLFHI 144
                 GLD + I+ I     KK       +G +C++CL EF  +E LR +P C+H FH+
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180

Query: 145 DCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVI-- 204
            CID WL+++ NCPLCR  I     ++P  Q P    + +N     +   S E  VV+  
Sbjct: 181 VCIDRWLKSHSNCPLCRAKI-----IVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDD 240

Query: 205 ---ELGRNPDRRRPPPFG------KVTSMGDE---CIDMREKDKEFLVQPIRRSFSMDSS 257
              E+  +     P  F       +++  G+E     D+   ++E LV  ++RSFS  S 
Sbjct: 241 HREEVSVSISSHHPSWFSAADIVLRISRDGEEEEGNYDLENGNREKLVD-LKRSFS--SG 300

[Close]
BLAST of Carg10083 vs. TAIR10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-19
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 78  VEPRGLDPSTIQSIPLINYKKPIKETTS--GGECAVCLTEFQPEEQLRKIPICSHLFHID 137
           V P     S + S+P+  +    + ++S   G+CAVCL++F+PE+QLR +P+C H FH D
Sbjct: 84  VSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHAD 143

Query: 138 CIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELG 197
           CIDIWL +N  CPLCR+ + A           S  DL  +     +     EN   +E+G
Sbjct: 144 CIDIWLVSNQTCPLCRSPLFA-----------SESDLMKSLAVVGSNNGGGENSFRLEIG 201

Query: 198 RNPDRRRPP 205
               RR+ P
Sbjct: 204 SISRRRQTP 201

[Close]
BLAST of Carg10083 vs. TAIR10
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-18
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 0 

Query: 82  GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWL 141
           GLD S I+SI +  Y+K +       +C+VCL+EFQ  E LR +P C+H FH+ CID WL
Sbjct: 133 GLDESLIKSITVYKYRK-MDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 192

Query: 142 QNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELGRNPDRR 201
           +++ NCPLCR  I   + +  +D          NS      +T D++ VV+ L     R 
Sbjct: 193 KSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNS-----ISTGDDSVVVVNLDLENSRS 252

Query: 202 RPPPFGK-VTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGD----RQLYMAVQAAVRQS 261
           R     +  T    E  D R+ ++       RRS S++S G       +   ++     +
Sbjct: 253 RNETVNEGSTPKPPEMQDSRDGEE-------RRSASLNSGGGVVSIADILREIEDDEESA 312

Query: 262 GGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGV 290
           G G SR   EG   +        GS+    NG+
Sbjct: 313 GVGTSRWVEEGEGEKTPP---PSGSAANQTNGI 329

[Close]
BLAST of Carg10083 vs. Swiss-Prot
Match: sp|Q9LSW9|ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.0e-66
Identity = 160/349 (45.85%), Postives = 201/349 (57.59%), Query Frame = 0 

Query: 20  SSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRR---EETLILRQ 79
           +SFPI+AVAVIGI ATAFLLV YY+FVIKCCLNW RI+IL RFSLSRRR   ++ L++  
Sbjct: 32  TSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYS 91

Query: 80  P-VEPRGLDPSTIQSIPLINYKKPI-------------KETTSGGECAVCLTEFQPEEQL 139
           P +  RGLD S I++IP+  +KK               +E     EC+VCL+EFQ EE+L
Sbjct: 92  PELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKL 151

Query: 140 RKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAA 199
           R IP CSHLFHIDCID+WLQNN NCPLCRT +S      P D+  +P   P N    +  
Sbjct: 152 RIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDT-SFPPDRVSAPSTSPEN----LVM 211

Query: 200 TTSDENFVVIELGRNPDRRRPPP------------------------------------- 259
              +  +VVIELG +    R  P                                     
Sbjct: 212 LRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKKLDRGG 271

Query: 260 -------FGKVTSMGDECIDMRE-KDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQS 297
                    K+TSMGDECID+R  KD++F  +QPIRRS SMDSS DRQLY+AVQ A+R++
Sbjct: 272 LPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQEAIRKN 331

[Close]
BLAST of Carg10083 vs. Swiss-Prot
Match: sp|P93823|ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.5e-61
Identity = 153/350 (43.71%), Postives = 199/350 (56.86%), Query Frame = 0 

Query: 13  PHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETL 72
           P +S++ ++FPI+A+AVIGI ATAFLLV YYIFVIKCCLNW +I+I RR   S  +   +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 73  ILRQPVEPRGLDPSTIQSIPLINYKK------PIKETTSGGECAVCLTEFQPEEQLRKIP 132
           I       RGLD S I++IP+  +KK         ++ +  EC+VCL EFQ +E+LR IP
Sbjct: 92  IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query: 133 ICSHLFHIDCIDIWLQNNPNCPLCRTSISAQ-NWLIPIDQAP-SPRDLPLNSGS----SV 192
            C H+FHIDCIDIWLQ N NCPLCRTS+S + ++ + +  AP SPR+   +S +      
Sbjct: 152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPG 211

Query: 193 AATTSDENFVVIEL------------------------------GRNPDRRRPPP----- 252
                D++FVVIEL                              G +P    P P     
Sbjct: 212 LVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSPLPIKFGN 271

Query: 253 ---------FGKVTSMGDECIDMREKDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQ 297
                    F KVTSMGDECID R KD  F  +QPIRRS SMDSS DRQLY+AVQ  + +
Sbjct: 272 RGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYLAVQEEISR 331

[Close]
BLAST of Carg10083 vs. Swiss-Prot
Match: sp|P0C041|ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-18
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 0 

Query: 25  IAVAVIGICATAFLLVGYYIFVIKCCLN---------WQRIEILRRFSLSRRREETLILR 84
           + +A+ GI ATAFLL  YY  V K C N           R +I+   +   R ++     
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 85  QPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPEEQLRKIPICSHLFHI 144
                 GLD + I+ I     KK       +G +C++CL EF  +E LR +P C+H FH+
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180

Query: 145 DCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVI-- 204
            CID WL+++ NCPLCR  I     ++P  Q P    + +N     +   S E  VV+  
Sbjct: 181 VCIDRWLKSHSNCPLCRAKI-----IVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDD 240

Query: 205 ---ELGRNPDRRRPPPFG------KVTSMGDE---CIDMREKDKEFLVQPIRRSFSMDSS 257
              E+  +     P  F       +++  G+E     D+   ++E LV  ++RSFS  S 
Sbjct: 241 HREEVSVSISSHHPSWFSAADIVLRISRDGEEEEGNYDLENGNREKLVD-LKRSFS--SG 300

[Close]
BLAST of Carg10083 vs. Swiss-Prot
Match: sp|Q9LY41|ATL4_ARATH (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-18
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 78  VEPRGLDPSTIQSIPLINYKKPIKETTS--GGECAVCLTEFQPEEQLRKIPICSHLFHID 137
           V P     S + S+P+  +    + ++S   G+CAVCL++F+PE+QLR +P+C H FH D
Sbjct: 84  VSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHAD 143

Query: 138 CIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELG 197
           CIDIWL +N  CPLCR+ + A           S  DL  +     +     EN   +E+G
Sbjct: 144 CIDIWLVSNQTCPLCRSPLFA-----------SESDLMKSLAVVGSNNGGGENSFRLEIG 201

Query: 198 RNPDRRRPP 205
               RR+ P
Sbjct: 204 SISRRRQTP 201

[Close]
BLAST of Carg10083 vs. Swiss-Prot
Match: sp|Q9SRQ8|ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-17
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 0 

Query: 82  GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWL 141
           GLD S I+SI +  Y+K +       +C+VCL+EFQ  E LR +P C+H FH+ CID WL
Sbjct: 133 GLDESLIKSITVYKYRK-MDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 192

Query: 142 QNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELGRNPDRR 201
           +++ NCPLCR  I   + +  +D          NS      +T D++ VV+ L     R 
Sbjct: 193 KSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNS-----ISTGDDSVVVVNLDLENSRS 252

Query: 202 RPPPFGK-VTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGD----RQLYMAVQAAVRQS 261
           R     +  T    E  D R+ ++       RRS S++S G       +   ++     +
Sbjct: 253 RNETVNEGSTPKPPEMQDSRDGEE-------RRSASLNSGGGVVSIADILREIEDDEESA 312

Query: 262 GGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGV 290
           G G SR   EG   +        GS+    NG+
Sbjct: 313 GVGTSRWVEEGEGEKTPP---PSGSAANQTNGI 329

[Close]
BLAST of Carg10083 vs. TrEMBL
Match: tr|A0A1S3CD01|A0A1S3CD01_CUCME (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103499411 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 3.6e-133
Identity = 248/308 (80.52%), Postives = 264/308 (85.71%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS +P HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTSPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRRE+TLILRQ  EPRGLDPS IQSIPLINYKKPI ETT+GGECAVCLTEFQ EE
Sbjct: 61  RFSLSRRREDTLILRQQAEPRGLDPSIIQSIPLINYKKPIGETTTGGECAVCLTEFQTEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP DQAPS RDL LN+G  +
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTDQAPSRRDLALNTGIPI 180

Query: 181 AATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFLV 240
           +A   DENFVVIELG N DRR+PP             F KVTSMGDECI+MREKD+EF+V
Sbjct: 181 SA--GDENFVVIELGGNLDRRQPPGLVSGEVAKSERKFKKVTSMGDECINMREKDEEFIV 240

Query: 241 QPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNG 297
           QPIRRSFSMDSSGDRQLYMAVQAAVR+  GGE+ VE EGCS+RV+RSFFSFGS RGSRN 
Sbjct: 241 QPIRRSFSMDSSGDRQLYMAVQAAVREKSGGENGVEVEGCSSRVKRSFFSFGSGRGSRNA 300

[Close]
BLAST of Carg10083 vs. TrEMBL
Match: tr|A0A0A0LNP5|A0A0A0LNP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G178720 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 5.2e-132
Identity = 249/309 (80.58%), Postives = 263/309 (85.11%), Query Frame = 0 

Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS TP HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTTPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPE 120
           RFSLSRRRE+TLILRQ  EPRGLDPSTIQSIPLINYKKPI E TT+GGECAVCLTEFQ E
Sbjct: 61  RFSLSRRREQTLILRQQAEPRGLDPSTIQSIPLINYKKPINETTTTGGECAVCLTEFQTE 120

Query: 121 EQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSS 180
           EQLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP +QAPS RDL LN  +S
Sbjct: 121 EQLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTNQAPSARDLALN--TS 180

Query: 181 VAATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFL 240
           +  +  DENFVVIELG N DR RPP             F KVTSMGDECI+MREKD+EF+
Sbjct: 181 IPISAGDENFVVIELGGNLDRCRPPELVSGEVAKSERKFKKVTSMGDECINMREKDEEFI 240

Query: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRN 297
           VQPIRRSFSMDSSGDRQLYMAVQAAVR+  GGES VE EGCS+RV+RSFFSFGS RGSRN
Sbjct: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVREKSGGESGVEVEGCSSRVKRSFFSFGSGRGSRN 300

[Close]
BLAST of Carg10083 vs. TrEMBL
Match: tr|A0A061EMD3|A0A061EMD3_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_020868 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 175/336 (52.08%), Postives = 215/336 (63.99%), Query Frame = 0 

Query: 4   PVISP--SATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRR 63
           P+ SP  S   PH  ++ +SFPIIA+AVIGI ATAFLLV YYIFVIKCCLNW RI++LRR
Sbjct: 20  PITSPGNSILGPHLHSSDTSFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWHRIDLLRR 79

Query: 64  FSLSRRR-EETLILRQP-VEPRGLDPSTIQSIPLINYKKPIKETTSGG----ECAVCLTE 123
           FSLSRR+ E+ L+   P +E RGLD S I+SIP+  +KK       G     ECAVCL E
Sbjct: 80  FSLSRRQHEDPLMAYSPAMEHRGLDESVIRSIPIFQFKKGGNNRYFGERSFCECAVCLNE 139

Query: 124 FQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLN 183
           FQ +E+LR IP CSH+FHIDCID+WLQNN NCPLCRTSIS+ +   P+DQ  +P   P +
Sbjct: 140 FQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISSTS-RFPVDQIIAPSTTPQD 199

Query: 184 SGSSVAATTS-DENFVVIELGRNPD----------------------------------R 243
                    S DE+FVVIELG +                                    +
Sbjct: 200 PNPYTENVISGDEDFVVIELGNHSSTDQILLGAQERLNSGELSTRSISPSPRKLEQRIVQ 259

Query: 244 RRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGE 297
           ++   F K TSMGDECID+R KD +F +QPIRRS SMDSS DRQLY+A+Q A+RQ+    
Sbjct: 260 KKERKFHKGTSMGDECIDIRGKDDQFAIQPIRRSISMDSSADRQLYLAIQEAIRQNRQVS 319

[Close]
BLAST of Carg10083 vs. TrEMBL
Match: tr|A0A1R3JKW4|A0A1R3JKW4_9ROSI (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_15859 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.2e-77
Identity = 175/342 (51.17%), Postives = 218/342 (63.74%), Query Frame = 0 

Query: 4   PVISPSA-----TPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEI 63
           PV SP +     +  HSS   +SFPIIA+AVIGI ATAFLLV YYIFVIKCCLNW RI++
Sbjct: 20  PVSSPGSNSILGSHLHSSD-TNSFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWHRIDL 79

Query: 64  LRRFSLSRRR-EETLILRQP-VEPRGLDPSTIQSIPLINYKKPIKETTSGG--ECAVCLT 123
           LRRFSLSRR+ E+ L+   P +E RGLD S I++IP+  +KK      S    ECAVCL 
Sbjct: 80  LRRFSLSRRQHEDPLMAYSPGMENRGLDESVIRAIPIFQFKKNDGNGNSRDFCECAVCLN 139

Query: 124 EFQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPL 183
           EFQ +E+LR IP CSH+FHIDCID+WLQNN NCPLCRTS+S+     P+DQ  +P   P 
Sbjct: 140 EFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSVSSTPGRFPVDQIIAPSSTPQ 199

Query: 184 NSGS-SVAATTSDENFVVIELGRNPD---------------------------------- 243
           +    +    T DE+FVVIELG NP                                   
Sbjct: 200 DPNPYTENIITGDEDFVVIELG-NPSSTNQVLLGAQERLNSGELSTVAPPRSISPSPRKL 259

Query: 244 -----RRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVR 297
                +++   F K +SMGDECID+R+KD++F +QPIRRS SMDSS DRQL++AVQ A+R
Sbjct: 260 EQRIGQKKGRKFQKGSSMGDECIDIRDKDEQFAIQPIRRSISMDSSADRQLFLAVQEAIR 319

[Close]
BLAST of Carg10083 vs. TrEMBL
Match: tr|A0A2R6RUT9|A0A2R6RUT9_ACTCH (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04173 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.3e-77
Identity = 168/325 (51.69%), Postives = 212/325 (65.23%), Query Frame = 0 

Query: 4   PVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFS 63
           P+ SP  T PHS ++ SSFPI+AVA+IGI  TAFLLVGYY+FVIKCCLNW RI+IL RFS
Sbjct: 18  PIKSP-PTNPHSHSSNSSFPILAVAIIGILTTAFLLVGYYVFVIKCCLNWHRIDILSRFS 77

Query: 64  LSR---RREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGG--ECAVCLTEFQP 123
           LSR   RR +       V+ RGL+ S IQSIP++ +K+   +       ECAVCL EF+ 
Sbjct: 78  LSRNRSRRHQMGFYSPRVQRRGLEESVIQSIPILQFKREKFDARERNFEECAVCLNEFKE 137

Query: 124 EEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGS 183
           EE+LR IP CSH+FH+DCID+WLQ+N NCPLCRTSIS ++   P+DQ  SP++   N+ +
Sbjct: 138 EEKLRVIPNCSHMFHVDCIDVWLQSNVNCPLCRTSISIES-RFPLDQRLSPQNSHPNTDN 197

Query: 184 SVAATTSDENFVVIELGR----------------------------NPDRRRPPPFGKVT 243
               T  DE++VVIELG                             N   +R      V+
Sbjct: 198 ---FTGRDEDYVVIELGNSDSSDQTLFGEQERVNRPISHFPGKFEPNMVPKRAKKISHVS 257

Query: 244 SMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSN 296
           SMGDECID+REKD EF +QPIRRSFSMDS+  R L++AVQ  VRQ+        +EG S+
Sbjct: 258 SMGDECIDIREKDNEFAIQPIRRSFSMDSANGRHLFLAVQEIVRQNRNANEVSPSEGSSS 317

The following BLAST results are available for this feature:
BLAST of Carg10083 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958779.11.6e-16498.65RING-H2 finger protein ATL16-like [Cucurbita moschata][more]
XP_023548943.12.8e-16197.31RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo][more]
XP_023006323.15.2e-16095.95RING-H2 finger protein ATL16-like [Cucurbita maxima][more]
XP_008460634.15.5e-13380.52PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo][more]
XP_004142260.17.9e-13280.58PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN61611.1 hypot... [more]
BLAST of Carg10083 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43420.15.7e-6845.85RING/U-box superfamily protein[more]
AT1G04360.13.6e-6243.71RING/U-box superfamily protein[more]
AT4G17905.15.8e-2030.47RING/U-box superfamily protein[more]
AT3G60220.13.8e-1936.43TOXICOS EN LEVADURA 4[more]
AT3G03550.11.4e-1830.99RING/U-box superfamily protein[more]
BLAST of Carg10083 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LSW9|ATL16_ARATH1.0e-6645.85RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1[more]
sp|P93823|ATL1_ARATH6.5e-6143.71RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1[more]
sp|P0C041|ATL53_ARATH1.0e-1830.47Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P... [more]
sp|Q9LY41|ATL4_ARATH6.8e-1836.43E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV... [more]
sp|Q9SRQ8|ATL51_ARATH2.6e-1730.99RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2[more]
BLAST of Carg10083 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CD01|A0A1S3CD01_CUCME3.6e-13380.52RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103499411 PE=4 SV=1[more]
tr|A0A0A0LNP5|A0A0A0LNP5_CUCSA5.2e-13280.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G178720 PE=4 SV=1[more]
tr|A0A061EMD3|A0A061EMD3_THECC6.7e-7952.08RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_020868 PE=4 SV=... [more]
tr|A0A1R3JKW4|A0A1R3JKW4_9ROSI2.2e-7751.17Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_15859 PE=4 SV=1[more]
tr|A0A2R6RUT9|A0A2R6RUT9_ACTCH6.3e-7751.69RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10083-RACarg10083-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 109..150
e-value: 2.4E-5
score: 33.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 108..151
e-value: 3.8E-12
score: 46.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 109..151
score: 12.15
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 73..157
e-value: 2.1E-21
score: 77.3
NoneNo IPR availablePANTHERPTHR14155:SF409RING-H2 FINGER PROTEIN ATL1-RELATEDcoord: 7..183
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 7..183
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 108..151
e-value: 2.80345E-16
score: 70.0233
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 108..158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10083Cla005987Watermelon (97103) v1carwmB0216
Carg10083Cla021528Watermelon (97103) v1carwmB0218
Carg10083Cla007576Watermelon (97103) v1carwmB0219
Carg10083Csa2G178720Cucumber (Chinese Long) v2carcuB0254
Carg10083Csa3G135640Cucumber (Chinese Long) v2carcuB0256
Carg10083MELO3C006433Melon (DHL92) v3.5.1carmeB0236
Carg10083MELO3C022982Melon (DHL92) v3.5.1carmeB0233
Carg10083ClCG07G000980Watermelon (Charleston Gray)carwcgB0224
Carg10083CSPI02G10460Wild cucumber (PI 183967)carcpiB0259
Carg10083CSPI03G12050Wild cucumber (PI 183967)carcpiB0261
Carg10083Cucsa.255310Cucumber (Gy14) v1carcgyB0269
Carg10083Cucsa.383690Cucumber (Gy14) v1carcgyB0273
Carg10083CmaCh06G013320Cucurbita maxima (Rimu)carcmaB0316
Carg10083CmaCh02G017530Cucurbita maxima (Rimu)carcmaB0315
Carg10083CmaCh17G001690Cucurbita maxima (Rimu)carcmaB0314
Carg10083CmaCh08G010880Cucurbita maxima (Rimu)carcmaB0321
Carg10083CmoCh17G001660Cucurbita moschata (Rifu)carcmoB0320
Carg10083CmoCh06G013360Cucurbita moschata (Rifu)carcmoB0322
Carg10083CmoCh02G017970Cucurbita moschata (Rifu)carcmoB0321
Carg10083Lsi09G012420Bottle gourd (USVL1VR-Ls)carlsiB204
Carg10083Lsi05G017210Bottle gourd (USVL1VR-Ls)carlsiB206
Carg10083Cp4.1LG17g01820Cucurbita pepo (Zucchini)carcpeB0323
Carg10083Cp4.1LG05g01270Cucurbita pepo (Zucchini)carcpeB0328
Carg10083Cp4.1LG08g03430Cucurbita pepo (Zucchini)carcpeB0329
Carg10083Cp4.1LG12g01390Cucurbita pepo (Zucchini)carcpeB0322
Carg10083CsGy2G010490Cucumber (Gy14) v2carcgybB0243
Carg10083CsGy3G012180Cucumber (Gy14) v2carcgybB0245
Carg10083MELO3C006433.2Melon (DHL92) v3.6.1carmedB0243
Carg10083MELO3C022982.2Melon (DHL92) v3.6.1carmedB0240
Carg10083CsaV3_3G012200Cucumber (Chinese Long) v3carcucB0260
Carg10083CsaV3_2G012890Cucumber (Chinese Long) v3carcucB0258
Carg10083Cla97C05G085200Watermelon (97103) v2carwmbB0229
Carg10083Cla97C06G116510Watermelon (97103) v2carwmbB0230
Carg10083Cla97C07G129260Watermelon (97103) v2carwmbB0234
Carg10083Bhi12G001441Wax gourdcarwgoB0282
Carg10083Bhi05G000160Wax gourdcarwgoB0287
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10083Carg08970Silver-seed gourdcarcarB264
Carg10083Carg06214Silver-seed gourdcarcarB266
Carg10083Carg10959Silver-seed gourdcarcarB267
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10083Watermelon (Charleston Gray)carwcgB0220
Carg10083Watermelon (Charleston Gray)carwcgB0221
Carg10083Watermelon (97103) v1carwmB0215
Carg10083Watermelon (97103) v2carwmbB0235
Carg10083Wax gourdcarwgoB0284
Carg10083Cucurbita pepo (Zucchini)carcpeB0327
Carg10083Silver-seed gourdcarcarB259
Carg10083Silver-seed gourdcarcarB262
Carg10083Cucurbita maxima (Rimu)carcmaB0313
Carg10083Cucurbita moschata (Rifu)carcmoB0319
Carg10083Cucurbita moschata (Rifu)carcmoB0326