Carg10040 (gene) Silver-seed gourd

Overview
NameCarg10040
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEGF-like (InterPro:
LocationCucurbita_argyrosperma_scaffold_039 : 59242 .. 61084 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCCATTTCTCTGTTTTGTGATCGTTGAAGGGTTATGCCTTCACCCATCGCTGTTCTTGCTCTACTGCTCATCTTTCAATCTGCGAACGCTAATGATTTCGGTTAGTTTTTCCCCCTTTCTGCTATTTTCATGGCTGTTCTTTCTAGGGTTACTTCAGATTTTTCATTTCTGTTCTTATACACCTTTTTATTCTGTGGCTTTTGCTGAAATGGATTGGTAACTTTTTTTGATAACTTGATTGGAAAGGACAGAGTGTTTGTTCTTGTTTTGATTGAATTGATAATGGCTGAAAATGTCTGCAAGGAAGTGAACTATGGATGAGAAACCTGTAAAGATTCTAGTAATGGGAGTTTCTTGTTTGAATGTGATAGCAGTTCTGGGCGGAAGCAGGCTCTTTCTGATCATGATGATAGTGACTGCTTCCAAGTTTCTCCTCTTCATTATACCCAAATGGAAGATTCCTTTCTCTTTCTCTATCTCCTATGAAGCTTTTCTGTGAAAAATAGCTGTGTTTTTAGCCATAGTTGCTATTTCATCTGCTTGCTGCAATTCATAGCTGTTTGATTCTGCCAAATGGGACTTGTTTTTTGGTTGATGAATGTATTTGCCAAAAGTTACTGCAGAGGTGGCTTGTAAGATGTAGATTTAGGCCGTCGCAATCGCATTTTCGTAGCAGCGGATTTGGCGATTGTGCGGCACTCACTCTCAATACCAAGTGAGTCAAGCCAACTTAGGATTGTATCGCCTATGGTCGAGCAATGTATGCTCAAGCCTTTGTCCCCATTTTGAGAAAACGGGCCAGAGAGATACTGAAAACAATGTTACATGACTACAAGCAAAAAGCAATACAATGGCTTAAATAATATATAACTTTCTGGTCTGGGAGAATTTAACAACTAGTCGCATCCCTCTATAATACATTTTGAGGCAATTTAGGTCGGGTAAGCCTAAACGTGATTTTGCTGAACGGTCATACAAAATCTAGGTGGGAGGAGTTGACGACTGGTCGCATTTCCCTATAGTACATTCTAGGGTATTTAATGTCTACCCGGCGTAGATATGATTACGTCGAAACGTCATACACTTACAAAAGACAAGAAGGAAATTATACTTCATGATACGAGGCTAGAGTTTTGGCATGTAACGAGCATGTGGCCATAGGCAACACACCGTGGACAAACATTACCGTGACAATGTGCTTCATTTGAAAGAAAAAAGTACTAAATTTATATGAATACTAAACATTTGAATTCTAATCTTAGACTACCCATTTCAAAATCGATATTACGTGACGGTCAGACAAGATTGTGGTTATAGGCGACACGAAAATTTAACGGTGAAGTTGGCCAAAGATATGAAACACATCAACAATGCTTATAGCTAAGGTTGCAGCTATGAACCAAGATGTCTTCGAAACTCAATGTGCAGATGATAAAGGCCCTGTTGGATTTAACTTATTTGGATGAGTACATATTTCATCATATTCAAGGTTCTATGGGTCTTGATCTTGATTATTATGTTCATATATCTGATGGTGCTAGAATTGAACATCTCACTGCTTTGAACAATGCTGATAGGCATTAGATTTTTACCGTTGATGCCACGTAATCTGACTCACCCGGTGCTTTTCGACCCCTCCATCGGGCGTACAGACTTAACCAAGAACTAATGAATCGATATTCGTTTGTAATGACCAATTCTATGTTTTTGGTGAATATGAAAGCTTATTTACATGATGTCTTTCTTGTTGCTGTATAGCTTGTCGATGGGTCGACTGTGGAGGCGGTTCGTGCAACAAGATGTCGCGGTTGGCATACAAATGTGATTGTTTGAAGGGCTAA

mRNA sequence

TGGCCATTTCTCTGTTTTGTGATCGTTGAAGGGTTATGCCTTCACCCATCGCTGTTCTTGCTCTACTGCTCATCTTTCAATCTGCGAACGCTAATGATTTCGATGATAAAGGCCCTGTTGGATTTAACTTATTTGGATGAGTACATATTTCATCATATTCAAGCTTGTCGATGGGTCGACTGTGGAGGCGGTTCGTGCAACAAGATGTCGCGGTTGGCATACAAATGTGATTGTTTGAAGGGCTAA

Coding sequence (CDS)

TGGCCATTTCTCTGTTTTGTGATCGTTGAAGGGTTATGCCTTCACCCATCGCTGTTCTTGCTCTACTGCTCATCTTTCAATCTGCGAACGCTAATGATTTCGATGATAAAGGCCCTGTTGGATTTAACTTATTTGGATGAGTACATATTTCATCATATTCAAGCTTGTCGATGGGTCGACTGTGGAGGCGGTTCGTGCAACAAGATGTCGCGGTTGGCATACAAATGTGATTGTTTGAAGGGCTAA

Protein sequence

WPFLCFVIVEGLCLHPSLFLLYCSSFNLRTLMISMIKALLDLTYLDEYIFHHIQACRWVDCGGGSCNKMSRLAYKCDCLKG
Homology
[Close]
BLAST of Carg10040 vs. NCBI nr
Match: XP_022138365.1 (protein jagged-1 [Momordica charantia])

HSP 1 Score: 52.4 bits (124), Expect = 8.5e-04
Identity = 20/26 (76.92%), Postives = 21/26 (80.77%), Query Frame = 0 

Query: 56  CRWVDCGGGSCNKMSRLAYKCDCLKG 82
           C WVDCGGGSCNK S L YKC CL+G
Sbjct: 118 CSWVDCGGGSCNKTSPLIYKCTCLEG 143

[Close]
BLAST of Carg10040 vs. TAIR10
Match: AT4G14746.1 (EGF-like (InterPro:IPR006210))

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 

Query: 56  CRWVDCGGGSCNKMSRLAYKCDCLKG 82
           C+W+DCGGG CN      Y C+C +G
Sbjct: 114 CQWMDCGGGLCNSSMPFQYSCNCREG 139

[Close]
BLAST of Carg10040 vs. TrEMBL
Match: tr|A0A1S3BLS9|A0A1S3BLS9_CUCME (uncharacterized protein LOC103491235 OS=Cucumis melo OX=3656 GN=LOC103491235 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.3e-04
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0 

Query: 53  IQACRWVDCGGGSCNKMSRLAYKCDCLKG 82
           +  C WVDCGGG CNK S L YKC+CL+G
Sbjct: 163 LDPCSWVDCGGGLCNKTSPLTYKCNCLEG 191

[Close]
BLAST of Carg10040 vs. TrEMBL
Match: tr|A0A0A0LKT4|A0A0A0LKT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G222120 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.3e-04
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0 

Query: 53  IQACRWVDCGGGSCNKMSRLAYKCDCLKG 82
           +  C WVDCGGG CNK S L YKC+CL+G
Sbjct: 130 LDPCSWVDCGGGLCNKTSPLTYKCNCLEG 158

The following BLAST results are available for this feature:
BLAST of Carg10040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138365.18.5e-0476.92protein jagged-1 [Momordica charantia][more]
BLAST of Carg10040 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14746.14.6e-0450.00EGF-like (InterPro:IPR006210)[more]
BLAST of Carg10040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg10040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLS9|A0A1S3BLS9_CUCME7.3e-0465.52uncharacterized protein LOC103491235 OS=Cucumis melo OX=3656 GN=LOC103491235 PE=... [more]
tr|A0A0A0LKT4|A0A0A0LKT4_CUCSA7.3e-0465.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G222120 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10040-RACarg10040-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10040Cp4.1LG12g01750Cucurbita pepo (Zucchini)carcpeB0322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg10040Cucurbita pepo (Zucchini)carcpeB0327
Carg10040Silver-seed gourdcarcarB260
Carg10040Silver-seed gourdcarcarB263
Carg10040Silver-seed gourdcarcarB264
Carg10040Silver-seed gourdcarcarB265
Carg10040Silver-seed gourdcarcarB266
Carg10040Cucumber (Gy14) v2carcgybB0243
Carg10040Cucumber (Gy14) v2carcgybB0246
Carg10040Cucumber (Gy14) v1carcgyB0269
Carg10040Cucumber (Gy14) v1carcgyB0274
Carg10040Cucurbita maxima (Rimu)carcmaB0313
Carg10040Cucurbita maxima (Rimu)carcmaB0314
Carg10040Cucurbita maxima (Rimu)carcmaB0316
Carg10040Cucurbita maxima (Rimu)carcmaB0321
Carg10040Cucurbita moschata (Rifu)carcmoB0319
Carg10040Cucurbita moschata (Rifu)carcmoB0320
Carg10040Cucurbita moschata (Rifu)carcmoB0322
Carg10040Cucurbita moschata (Rifu)carcmoB0326
Carg10040Cucurbita pepo (Zucchini)carcpeB0323
Carg10040Cucurbita pepo (Zucchini)carcpeB0329
Carg10040Wild cucumber (PI 183967)carcpiB0259
Carg10040Wild cucumber (PI 183967)carcpiB0261
Carg10040Cucumber (Chinese Long) v2carcuB0254
Carg10040Cucumber (Chinese Long) v2carcuB0256
Carg10040Cucumber (Chinese Long) v3carcucB0258
Carg10040Cucumber (Chinese Long) v3carcucB0261
Carg10040Bottle gourd (USVL1VR-Ls)carlsiB204
Carg10040Bottle gourd (USVL1VR-Ls)carlsiB206
Carg10040Bottle gourd (USVL1VR-Ls)carlsiB207
Carg10040Melon (DHL92) v3.5.1carmeB0234
Carg10040Melon (DHL92) v3.5.1carmeB0236
Carg10040Melon (DHL92) v3.6.1carmedB0241
Carg10040Melon (DHL92) v3.6.1carmedB0244
Carg10040Watermelon (Charleston Gray)carwcgB0220
Carg10040Watermelon (Charleston Gray)carwcgB0221
Carg10040Watermelon (Charleston Gray)carwcgB0225
Carg10040Watermelon (97103) v1carwmB0215
Carg10040Watermelon (97103) v1carwmB0217
Carg10040Watermelon (97103) v1carwmB0218
Carg10040Watermelon (97103) v1carwmB0219
Carg10040Watermelon (97103) v2carwmbB0229
Carg10040Watermelon (97103) v2carwmbB0230
Carg10040Watermelon (97103) v2carwmbB0233
Carg10040Watermelon (97103) v2carwmbB0235
Carg10040Wax gourdcarwgoB0282
Carg10040Wax gourdcarwgoB0284
Carg10040Wax gourdcarwgoB0286