Carg10006 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10006
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_030 : 923471 .. 924088 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAATCGAAGGGAAGCGGCGAGATTAGAAGCTCCCGGGAGCGCCGTAGACGCATACAGATGATATGCACAAACACGACCACGTCTGGAAATACGATGCCACAAGTTCTTCGACCTTGGGGCCGTTCGCCACGTGCGCCAACTCTTCGCCATTGTCTCCAGACCTGATCTATTATTGTTCAATGTCGTTGTTAGTGGCTAATCTTCGATCTCTCTGTCTATCCCCATTTAAGAAATGAAAAGACTGATATTAGGCCACACTTAATTGTGCATTTACGATTTCAGCTGCTTCGAGGTTTGAGGATGAGAGGATTGGCGTCTTGTTGCAAGCGCATTCCATTGTTGGTGGGGCGGCGTCAAATTTGTTTGTTGGGTATGTAATCGTTGATTTGTACATCAAATTTACGCGCGCCGAGTTGGCGCGCAAGGTGTTTGATGTTGTGCTTGAGAGGGATACGGTTCTTTGGAACACAGAGAACCCGATGTCTATTGAAGTCAAGCTGAAGCACAAGGACAAGAGTGTCAAAAGATAGGCTTGATAAGAGCCAAATAGGGCCTCGGGACTTAACCTCAAAAGTCGGAGTTTCAGTCTGAATTTTGGCGTATGATCTTGGC

mRNA sequence

ATGAGGAAATCGAAGGGAAGCGGCGAGATTAGAAGCTCCCGGGAGCGCCGTAGACGCATACAGATGATATGCACAAACACGACCACGTCTGGAAATACGATGCCACAAGTTCTTCGACCTTGGGGCCGTTCGCCACCTGCTTCGAGGTTTGAGGATGAGAGGATTGGCGTCTTGTTGCAAGCGCATTCCATTGTTGGTGGGGCGGCGTCAAATTTGTTTGTTGGGTATGTAATCGTTGATTTGTACATCAAATTTACGCGCGCCGAGTTGGCGCGCAAGGTGTTTGATGTTGTGCTTGAGAGGGATACGGTTCTTTGGAACACAGAGAACCCGATGTCTATTGAAGTCAAGCTGAAGCACAAGGACAAGAGTGTCAAAAGATAGGCTTGATAAGAGCCAAATAGGGCCTCGGGACTTAACCTCAAAAGTCGGAGTTTCAGTCTGAATTTTGGCGTATGATCTTGGC

Coding sequence (CDS)

ATGAGGAAATCGAAGGGAAGCGGCGAGATTAGAAGCTCCCGGGAGCGCCGTAGACGCATACAGATGATATGCACAAACACGACCACGTCTGGAAATACGATGCCACAAGTTCTTCGACCTTGGGGCCGTTCGCCACCTGCTTCGAGGTTTGAGGATGAGAGGATTGGCGTCTTGTTGCAAGCGCATTCCATTGTTGGTGGGGCGGCGTCAAATTTGTTTGTTGGGTATGTAATCGTTGATTTGTACATCAAATTTACGCGCGCCGAGTTGGCGCGCAAGGTGTTTGATGTTGTGCTTGAGAGGGATACGGTTCTTTGGAACACAGAGAACCCGATGTCTATTGAAGTCAAGCTGAAGCACAAGGACAAGAGTGTCAAAAGATAG

Protein sequence

MRKSKGSGEIRSSRERRRRIQMICTNTTTSGNTMPQVLRPWGRSPPASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNTENPMSIEVKLKHKDKSVKR

Homology

[Close]

BLAST of Carg10006 vs. NCBI nr
Match: XP_004152852.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 3.9e-19
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLW
Sbjct: 123 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182

Query: 107 NT 109
           NT
Sbjct: 183 NT 184

[Close]

BLAST of Carg10006 vs. NCBI nr
Match: XP_016902152.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 3.9e-19
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLW
Sbjct: 123 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182

Query: 107 NT 109
           NT
Sbjct: 183 NT 184

[Close]

BLAST of Carg10006 vs. NCBI nr
Match: KGN61216.1 (hypothetical protein Csa_2G070330 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 3.9e-19
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLW
Sbjct: 119 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 178

Query: 107 NT 109
           NT
Sbjct: 179 NT 180

[Close]

BLAST of Carg10006 vs. NCBI nr
Match: XP_022135485.1 (pentatricopeptide repeat-containing protein At4g30700 [Momordica charantia] >XP_022135486.1 pentatricopeptide repeat-containing protein At4g30700 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-19
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASRFEDERIG LL AHSIV G ASNLFVG   VDLY KFTRA+LARKVFDV+ ERDTVLW
Sbjct: 123 ASRFEDERIGTLLHAHSIVDGVASNLFVGSATVDLYFKFTRADLARKVFDVIPERDTVLW 182

Query: 107 NT 109
           NT
Sbjct: 183 NT 184

[Close]

BLAST of Carg10006 vs. NCBI nr
Match: XP_022925824.1 (pentatricopeptide repeat-containing protein At4g30700 [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           AS+FEDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRA+LARKVFD + ERDTVLW
Sbjct: 123 ASKFEDERLGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRADLARKVFDAMPERDTVLW 182

Query: 107 NT 109
           NT
Sbjct: 183 NT 184

[Close]

BLAST of Carg10006 vs. TAIR10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 8.0e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           AS F D+R G ++   ++V G  S L +G  IV +Y KF R E ARKVFD + E+DT+LW
Sbjct: 129 ASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILW 188

Query: 107 NT 109
           NT
Sbjct: 189 NT 190

[Close]

BLAST of Carg10006 vs. TAIR10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 55  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN 108
           +G+++ A +I  G ASN++VG  +V +Y K  + E A KVF+ + E++ V WN
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWN 397

[Close]

BLAST of Carg10006 vs. TAIR10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 56  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT 109
           GV + ++SI  G  S LFV   ++DLY +F R    +KVFD +  RD + WN+
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

[Close]

BLAST of Carg10006 vs. TAIR10
Match: AT3G50420.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 51  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 107
           E ER   G LL       G   ++FVG  ++ +Y K   AE A+KVFDV+ ERD VLW
Sbjct: 414 EPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLW 471

[Close]

BLAST of Carg10006 vs. TAIR10
Match: AT1G03510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.9e-05
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 55  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN 108
           +G  + AHS+     SN FVG  ++D+Y K      ARK+FD + +R+ V+WN
Sbjct: 66  LGGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWN 118

[Close]

BLAST of Carg10006 vs. Swiss-Prot
Match: sp|Q9SUH6|PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           AS F D+R G ++   ++V G  S L +G  IV +Y KF R E ARKVFD + E+DT+LW
Sbjct: 129 ASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILW 188

Query: 107 NT 109
           NT
Sbjct: 189 NT 190

[Close]

BLAST of Carg10006 vs. Swiss-Prot
Match: sp|Q9SS83|PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 55  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN 108
           +G+++ A +I  G ASN++VG  +V +Y K  + E A KVF+ + E++ V WN
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWN 397

[Close]

BLAST of Carg10006 vs. Swiss-Prot
Match: sp|O81767|PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-04
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 56  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT 109
           GV + ++SI  G  S LFV   ++DLY +F R    +KVFD +  RD + WN+
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

[Close]

BLAST of Carg10006 vs. Swiss-Prot
Match: sp|Q9SCT2|PP277_ARATH (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E85 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 51  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 107
           E ER   G LL       G   ++FVG  ++ +Y K   AE A+KVFDV+ ERD VLW
Sbjct: 414 EPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLW 471

[Close]

BLAST of Carg10006 vs. Swiss-Prot
Match: sp|Q9LR72|PPR7_ARATH (Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E3 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.0e-04
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 55  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN 108
           +G  + AHS+     SN FVG  ++D+Y K      ARK+FD + +R+ V+WN
Sbjct: 66  LGGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWN 118

[Close]

BLAST of Carg10006 vs. TrEMBL
Match: tr|A0A1S4E1Q1|A0A1S4E1Q1_CUCME (pentatricopeptide repeat-containing protein At4g30700 OS=Cucumis melo OX=3656 GN=LOC103492100 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLW
Sbjct: 123 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182

Query: 107 NT 109
           NT
Sbjct: 183 NT 184

[Close]

BLAST of Carg10006 vs. TrEMBL
Match: tr|A0A0A0LMK7|A0A0A0LMK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070330 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLW
Sbjct: 119 ASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 178

Query: 107 NT 109
           NT
Sbjct: 179 NT 180

[Close]

BLAST of Carg10006 vs. TrEMBL
Match: tr|W9QV51|W9QV51_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013952 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           AS F+D R G+LL AHS+V G +SNLFVG   VD+Y+KF++ ELA+KVFD + ERDTVLW
Sbjct: 117 ASSFKDPRYGILLHAHSVVDGLSSNLFVGSAAVDMYLKFSKVELAQKVFDGMPERDTVLW 176

Query: 107 NT 109
           NT
Sbjct: 177 NT 178

[Close]

BLAST of Carg10006 vs. TrEMBL
Match: tr|A0A251NHF9|A0A251NHF9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G265500 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 47  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW 106
           AS F+DE+ G+LL AHSI+ G  SNL+VG +IVD Y KF+R ELA+KVFD + E+DTVLW
Sbjct: 124 ASGFKDEKYGLLLHAHSIIDGLGSNLYVGSIIVDFYFKFSRVELAQKVFDGMPEKDTVLW 183

Query: 107 NT 109
           NT
Sbjct: 184 NT 185

[Close]

BLAST of Carg10006 vs. TrEMBL
Match: tr|A0A2P5DAY0|A0A2P5DAY0_PARAD (DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_081120 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 50  FEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT 109
           F+D++ G+LL +HS+V G ASNLFVG  +VDLY KF++ ELA+KVFD + ERDTVLWNT
Sbjct: 120 FKDDKYGILLHSHSVVDGLASNLFVGSALVDLYFKFSQVELAQKVFDGMSERDTVLWNT 178

The following BLAST results are available for this feature:

BLAST of Carg10006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152852.1	3.9e-19	83.87	PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis sativu...	[more]
XP_016902152.1	3.9e-19	83.87	PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis melo]	[more]
KGN61216.1	3.9e-19	83.87	hypothetical protein Csa_2G070330 [Cucumis sativus]	[more]
XP_022135485.1	8.6e-19	82.26	pentatricopeptide repeat-containing protein At4g30700 [Momordica charantia] >XP_...	[more]
XP_022925824.1	1.5e-18	80.65	pentatricopeptide repeat-containing protein At4g30700 [Cucurbita moschata]	[more]

BLAST of Carg10006 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30700.1	8.0e-11	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G09040.1	1.3e-05	39.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G33990.1	2.3e-05	41.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G50420.1	3.0e-05	44.83	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G03510.1	3.9e-05	39.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg10006 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUH6\|PP341_ARATH	1.4e-09	50.00	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SS83\|PP220_ARATH	2.4e-04	39.62	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
sp\|O81767\|PP348_ARATH	4.1e-04	41.51	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SCT2\|PP277_ARATH	5.3e-04	44.83	Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LR72\|PPR7_ARATH	7.0e-04	39.62	Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis th...	[more]

BLAST of Carg10006 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1Q1\|A0A1S4E1Q1_CUCME	2.6e-19	83.87	pentatricopeptide repeat-containing protein At4g30700 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LMK7\|A0A0A0LMK7_CUCSA	2.6e-19	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070330 PE=4 SV=1	[more]
tr\|W9QV51\|W9QV51_9ROSA	7.2e-14	64.52	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013952 PE=4 SV=1	[more]
tr\|A0A251NHF9\|A0A251NHF9_PRUPE	7.2e-14	64.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G265500 PE=4 SV=1	[more]
tr\|A0A2P5DAY0\|A0A2P5DAY0_PARAD	2.1e-13	64.41	DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_081...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10006-RA	Carg10006-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10006	CmoCh10G004920	Cucurbita moschata (Rifu)	carcmoB0172
Carg10006	Cp4.1LG18g05770	Cucurbita pepo (Zucchini)	carcpeB0185

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10006	Carg14078	Silver-seed gourd	carcarB151

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10006	Wax gourd	carwgoB0156
Carg10006	Cucumber (Gy14) v2	carcgybB0132
Carg10006	Cucumber (Gy14) v2	carcgybB0138
Carg10006	Cucumber (Gy14) v1	carcgyB0151
Carg10006	Cucumber (Gy14) v1	carcgyB0156
Carg10006	Cucurbita maxima (Rimu)	carcmaB0166
Carg10006	Cucurbita maxima (Rimu)	carcmaB0169
Carg10006	Cucurbita moschata (Rifu)	carcmoB0175
Carg10006	Cucurbita pepo (Zucchini)	carcpeB0186
Carg10006	Wild cucumber (PI 183967)	carcpiB0138
Carg10006	Wild cucumber (PI 183967)	carcpiB0144
Carg10006	Cucumber (Chinese Long) v2	carcuB0133
Carg10006	Cucumber (Chinese Long) v2	carcuB0136
Carg10006	Cucumber (Chinese Long) v2	carcuB0140
Carg10006	Cucumber (Chinese Long) v3	carcucB0142
Carg10006	Cucumber (Chinese Long) v3	carcucB0148
Carg10006	Bottle gourd (USVL1VR-Ls)	carlsiB112
Carg10006	Bottle gourd (USVL1VR-Ls)	carlsiB117
Carg10006	Melon (DHL92) v3.5.1	carmeB0131
Carg10006	Melon (DHL92) v3.6.1	carmedB0135
Carg10006	Watermelon (Charleston Gray)	carwcgB0125
Carg10006	Watermelon (97103) v1	carwmB0126
Carg10006	Watermelon (97103) v2	carwmbB0133
Carg10006	Wax gourd	carwgoB0165