Carg09935 (gene) Silver-seed gourd

Overview
NameCarg09935
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_030 : 568733 .. 569710 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTATGATGTAATTTTCCCCTTTCTTAAGCTGTTTTTGTGCGCGTTTGTTTGTTTGTTTGTTTGTTTCTTAATTTGCCTTTTCAGAAACGGTAACTTTTAGGTCAATTTCTCCCTGAATTTTTACTCGGAAATGTGAGGTTTCAATTCGATTTCGATTTAATGCCTAATCTTCTCCGTTGATAGCAGAAACTATCTTGAATCGATTCAAGCCTGTTTTTGTTTGTTTTATTCTATTATTTATTTTTTATTTGTTTTTTTTTACTGTGACCCCATGTGTAGGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAATATATAATTGAAGCAGTTGGTTTGGTTTCATCAAAGGCTATGGATCTGTACTTTTACTGTGCCCGTAGATAAACCAACAGTTTCTGATATTTTAGTGCAGCCATAGAATGGATGGAGGTTATAGGCTATAATGTTTTTCATCCATTTTCTTTTTGTGAGTTTCTGTAATGTCAGATCTGTGTAGTGGTGTGTGGTTGAGTTGAATTATTAAAGAGGAGAAGGATTATTCTGTGCAGCAGAGTAAATTTGAAACACCAAGTTAATTCCTATTGTAATGAATGCTCTATAGGTTTAAGGTATTAGGACCACTTATCAGAAGAAGCCTTTAATTGGCTCTTTTTTAGCTTCAAACTCCTTCAATGCACACCATACAAACCCCTTTTTTTCTCA

mRNA sequence

ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAATATATAATTGAAGCAGTTGGTTTGGTTTCATCAAAGGCTATGGATCTGTACTTTTACTGTGCCCGTAGATAAACCAACAGTTTCTGATATTTTAGTGCAGCCATAGAATGGATGGAGGTTATAGGCTATAATGTTTTTCATCCATTTTCTTTTTGTGAGTTTCTGTAATGTCAGATCTGTGTAGTGGTGTGTGGTTGAGTTGAATTATTAAAGAGGAGAAGGATTATTCTGTGCAGCAGAGTAAATTTGAAACACCAAGTTAATTCCTATTGTAATGAATGCTCTATAGGTTTAAGGTATTAGGACCACTTATCAGAAGAAGCCTTTAATTGGCTCTTTTTTAGCTTCAAACTCCTTCAATGCACACCATACAAACCCCTTTTTTTCTCA

Coding sequence (CDS)

ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAA

Protein sequence

MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTMTFNRRRRRYISETYKIVRWQAKTSLCEKALKPYNMPFDDDDD
Homology
[Close]
BLAST of Carg09935 vs. NCBI nr
Match: ACU17075.1 (unknown [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. NCBI nr
Match: KRH20148.1 (hypothetical protein GLYMA_13G159700 [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. TrEMBL
Match: tr|K7M032|K7M032_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G159700 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. TrEMBL
Match: tr|C6T5P3|C6T5P3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

The following BLAST results are available for this feature:
BLAST of Carg09935 vs. NCBI nr
Match NameE-valueIdentityDescription
ACU17075.12.5e-0565.31unknown [Glycine max][more]
KRH20148.12.5e-0565.31hypothetical protein GLYMA_13G159700 [Glycine max][more]
BLAST of Carg09935 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg09935 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg09935 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|K7M032|K7M032_SOYBN1.7e-0565.31Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G159700 PE=4 SV=1[more]
tr|C6T5P3|C6T5P3_SOYBN1.7e-0565.31Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09935-RACarg09935-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09935CmaCh10G005310Cucurbita maxima (Rimu)carcmaB0166
Carg09935CmoCh10G005660Cucurbita moschata (Rifu)carcmoB0172
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09935Silver-seed gourdcarcarB041
Carg09935Silver-seed gourdcarcarB152
Carg09935Silver-seed gourdcarcarB154
Carg09935Cucumber (Gy14) v2carcgybB0132
Carg09935Cucumber (Gy14) v2carcgybB0137
Carg09935Cucumber (Gy14) v1carcgyB0149
Carg09935Cucumber (Gy14) v1carcgyB0154
Carg09935Cucurbita maxima (Rimu)carcmaB0165
Carg09935Cucurbita maxima (Rimu)carcmaB0169
Carg09935Cucurbita maxima (Rimu)carcmaB0171
Carg09935Cucurbita moschata (Rifu)carcmoB0175
Carg09935Cucurbita moschata (Rifu)carcmoB0179
Carg09935Cucurbita pepo (Zucchini)carcpeB0181
Carg09935Cucurbita pepo (Zucchini)carcpeB0185
Carg09935Cucurbita pepo (Zucchini)carcpeB0186
Carg09935Wild cucumber (PI 183967)carcpiB0138
Carg09935Wild cucumber (PI 183967)carcpiB0141
Carg09935Wild cucumber (PI 183967)carcpiB0143
Carg09935Cucumber (Chinese Long) v2carcuB0137
Carg09935Cucumber (Chinese Long) v3carcucB0142
Carg09935Cucumber (Chinese Long) v3carcucB0147
Carg09935Bottle gourd (USVL1VR-Ls)carlsiB111
Carg09935Bottle gourd (USVL1VR-Ls)carlsiB115
Carg09935Melon (DHL92) v3.5.1carmeB0131
Carg09935Melon (DHL92) v3.5.1carmeB0133
Carg09935Melon (DHL92) v3.6.1carmedB0135
Carg09935Melon (DHL92) v3.6.1carmedB0137
Carg09935Watermelon (Charleston Gray)carwcgB0124
Carg09935Watermelon (Charleston Gray)carwcgB0125
Carg09935Watermelon (97103) v1carwmB0125
Carg09935Watermelon (97103) v1carwmB0126
Carg09935Watermelon (97103) v2carwmbB0131
Carg09935Watermelon (97103) v2carwmbB0132
Carg09935Watermelon (97103) v2carwmbB0133
Carg09935Watermelon (97103) v2carwmbB0136
Carg09935Wax gourdcarwgoB0165