Carg09877 (gene) Silver-seed gourd

Overview
NameCarg09877
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontudor domain-containing protein 3-like
LocationCucurbita_argyrosperma_scaffold_030 : 286456 .. 287376 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAATTAGGAATTAGGATCTAACCTCAAACTTCTACCGCCTCGAATTACCGATATCAGGCCGGTCAGTGAAGGGGGGCAAGTGCACATTCCAGCGCTGAGGCGATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGGTGAATTGTAGTCTCTTATGGTTGTCAGGTGTTTCATAGTTGCTGGAAAAAAGTGTGGATAAAGAATCAATAAGTTCATATATCTATCCTTCGTAGTCCGTTGACGCAGTGAATGAAGTTAATTTTATATTTGTTCTTTGATTATGGAGTTCCTTATTTCATATTCCCACTTTTTTTTTTTTTTGCGGAAACTAGAAGCGCGGGGTAGCTATTCTTTGTCTTAGTCGCTTTCTGATCAACATTATTTCATCAATGATTTACTAGTAGATGATTTCAGCTGTTTTAGCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

mRNA sequence

AGTAATTAGGAATTAGGATCTAACCTCAAACTTCTACCGCCTCGAATTACCGATATCAGGCCGGTCAGTGAAGGGGGGCAAGTGCACATTCCAGCGCTGAGGCGATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

Coding sequence (CDS)

ATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

Protein sequence

MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYSHIPSIPDDIPPGTKVFRIISPCMSFQLLYFEELKFLIFLKYKFLIEVDCPD
Homology
[Close]
BLAST of Carg09877 vs. NCBI nr
Match: XP_022961249.1 (tudor domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]
BLAST of Carg09877 vs. NCBI nr
Match: XP_023516947.1 (tudor domain-containing protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLRVRGWNF DLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRVRGWNFSDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]
BLAST of Carg09877 vs. NCBI nr
Match: XP_022987733.1 (tudor domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 260.0 bits (663), Expect = 5.8e-66
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLRVRGW FGDLDEVR VIMIGSALADDPT VVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRVRGWTFGDLDEVRGVIMIGSALADDPTLVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPS PDDIPPGTKV
Sbjct: 121 IEYSHIPSFPDDIPPGTKV 139

[Close]
BLAST of Carg09877 vs. NCBI nr
Match: XP_008463350.1 (PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 5.3e-59
Identity = 119/139 (85.61%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIP IPDDIPPGTK+
Sbjct: 121 IEYSHIPFIPDDIPPGTKI 139

[Close]
BLAST of Carg09877 vs. NCBI nr
Match: XP_008463347.1 (PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo] >XP_008463349.1 PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo] >XP_016903017.1 PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 9.0e-59
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKVFR 142
           IEYSHIP IPDDIPPGTK  R
Sbjct: 121 IEYSHIPFIPDDIPPGTKFDR 141

[Close]
BLAST of Carg09877 vs. TAIR10
Match: AT5G19950.1 (Domain of unknown function (DUF1767))

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-31
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 0 

Query: 8   VLETLRVRGWNFGDLDEVRAVIMIGSAL---ADDPTSVVDSVESELINMDLRSIGGKSLP 67
           V+  L  RGW F D++ +++++   S+L    +   ++V+SVE+EL+NMD++ IGGKSLP
Sbjct: 17  VINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKSLP 76

Query: 68  DLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYS 127
           D + LR+ S + GP VLQIS VRD++RSS +    +S  +R+L+F LTDG TEI+A+EYS
Sbjct: 77  DPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYS 136

Query: 128 HIPSIPDDIPPGTKV 140
           HIP+I +D+ PGTKV
Sbjct: 137 HIPTINNDVTPGTKV 151

[Close]
BLAST of Carg09877 vs. Swiss-Prot
Match: sp|Q91W18|TDRD3_MOUSE (Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+IG K LP      K  ++ GP VLQI  VR+++    +  ++A+   R+LR  
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEESQAA--PRMLRVQ 100

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           +TDGHT  TA+E+S+I  I  + PPGTKV
Sbjct: 101 MTDGHTSCTAVEFSYISKISLNTPPGTKV 127

[Close]
BLAST of Carg09877 vs. Swiss-Prot
Match: sp|Q5ZMS6|TDRD3_CHICK (Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+IG K LP      K  ++ GP VLQI  +R++S    +  ++A+   R+LR  
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEESQAA--PRMLRLQ 100

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           +TDGHT  TAIEY+ +  I  + PPGTK+
Sbjct: 101 MTDGHTSCTAIEYNSMSKISLNTPPGTKI 127

[Close]
BLAST of Carg09877 vs. Swiss-Prot
Match: sp|Q6P1U3|TDRD3_XENTR (Tudor domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=tdrd3 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+ G K LP+     K  +V GP VLQI  +R+IS    +  ++A+   R+LR  
Sbjct: 6   LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEESQAA--PRMLRLQ 65

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           LTDGHT  TAIE +++  I  + PPGTK+
Sbjct: 66  LTDGHTSCTAIELNYLSKISLNTPPGTKI 92

[Close]
BLAST of Carg09877 vs. Swiss-Prot
Match: sp|Q6NYG6|TDRD3_DANRE (Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           M D S ++++     GW   D      +    S+   + TS  D ++  L N DLR IG 
Sbjct: 1   MCDLSSALIK----EGWYLTD----EGIEECKSSSEKEKTSPTDIIQVAL-NNDLRPIGK 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
             LP      +  ++ GP VLQ+  +R+++ S     ++A+   R+LR  +TDGHT  T 
Sbjct: 61  SFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEESQAA--PRMLRVQMTDGHTACTG 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           +E+  +  I  + PPGTKV
Sbjct: 121 LEFKQLSKISLNTPPGTKV 128

[Close]
BLAST of Carg09877 vs. Swiss-Prot
Match: sp|Q2HJG4|TDRD3_BOVIN (Tudor domain-containing protein 3 OS=Bos taurus OX=9913 GN=TDRD3 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.0e-06
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 77  GPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYSHIPSIPDDIPPG 136
           GP VLQI  +R+++    +  ++A+   R+LR  +TDGH   TA+E+S++  I  + PPG
Sbjct: 45  GPCVLQIQKIRNVAAPKDNEESQAA--PRMLRLQMTDGHISCTAVEFSYLSKISLNTPPG 104

Query: 137 TKV 140
           TKV
Sbjct: 105 TKV 105

[Close]
BLAST of Carg09877 vs. TrEMBL
Match: tr|A0A1S3CJF1|A0A1S3CJF1_CUCME (tudor domain-containing protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501529 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.5e-59
Identity = 119/139 (85.61%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIP IPDDIPPGTK+
Sbjct: 121 IEYSHIPFIPDDIPPGTKI 139

[Close]
BLAST of Carg09877 vs. TrEMBL
Match: tr|A0A1S4E471|A0A1S4E471_CUCME (tudor domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501529 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 5.9e-59
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKVFR 142
           IEYSHIP IPDDIPPGTK  R
Sbjct: 121 IEYSHIPFIPDDIPPGTKFDR 141

[Close]
BLAST of Carg09877 vs. TrEMBL
Match: tr|A0A0A0LUB7|A0A0A0LUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G399650 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 5.6e-57
Identity = 115/138 (83.33%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVI I +ALADDP+SV+DSVESELIN+DLR IGG
Sbjct: 1   MADASVAVLETLRLRGWNFSDSDEVKAVITIATALADDPSSVLDSVESELINIDLRFIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLP+ +L RKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+EITA
Sbjct: 61  KSLPEPALFRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSEITA 120

Query: 121 IEYSHIPSIPDDIPPGTK 139
           IEYSHIPSIPDDIPPGTK
Sbjct: 121 IEYSHIPSIPDDIPPGTK 138

[Close]
BLAST of Carg09877 vs. TrEMBL
Match: tr|A0A2N9H9C2|A0A2N9H9C2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36081 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 90/138 (65.22%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 2   ADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGGK 61
           +D+   +LETLR RGW  GD+D+++A+IMI SALADD ++VVDSVESEL NMDL+SIG K
Sbjct: 7   SDSESKILETLRSRGWCLGDIDQLKAIIMIHSALADDASTVVDSVESELTNMDLKSIGAK 66

Query: 62  SLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAI 121
           SLPD +L RK S +LGP VLQISSVRDI++S ++  +  S+ RRLLR GLTDGH EI A+
Sbjct: 67  SLPDPTLPRKPSHILGPKVLQISSVRDITKSLIESFSGGSSSRRLLRLGLTDGHNEIIAV 126

Query: 122 EYSHIPSIPDDIPPGTKV 140
           E+SH+PSIPDD+ PGTKV
Sbjct: 127 EFSHVPSIPDDVVPGTKV 144

[Close]
BLAST of Carg09877 vs. TrEMBL
Match: tr|A0A2I4HT46|A0A2I4HT46_9ROSI (tudor domain-containing protein 3 isoform X1 OS=Juglans regia OX=51240 GN=LOC109021186 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 90/139 (64.75%), Postives = 118/139 (84.89%), Query Frame = 0 

Query: 3   DASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGGKS 62
           D+   V+ETLR RGW+ GD++ V+A+IMI SALADD ++VVDSVESEL+N DL+SIG KS
Sbjct: 7   DSESIVIETLRSRGWSLGDVELVKAIIMIHSALADDASTVVDSVESELVNTDLKSIGDKS 66

Query: 63  LPDLSLL--RKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 122
           LPD +LL  RKSS +LGP VLQISSVRDI++SS++ ++++S+ RRLL+ GLTDGHTEITA
Sbjct: 67  LPDPTLLRNRKSSHILGPKVLQISSVRDITKSSIEDVSRSSSSRRLLKLGLTDGHTEITA 126

Query: 123 IEYSHIPSIPDDIPPGTKV 140
           IE++ +PS+PDD+ PG KV
Sbjct: 127 IEFAPVPSVPDDLVPGAKV 145

The following BLAST results are available for this feature:
BLAST of Carg09877 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961249.11.2e-68100.00tudor domain-containing protein 3 [Cucurbita moschata][more]
XP_023516947.11.4e-6798.56tudor domain-containing protein 3 [Cucurbita pepo subsp. pepo][more]
XP_022987733.15.8e-6696.40tudor domain-containing protein 3 isoform X1 [Cucurbita maxima][more]
XP_008463350.15.3e-5985.61PREDICTED: tudor domain-containing protein 3 isoform X2 [Cucumis melo][more]
XP_008463347.19.0e-5985.11PREDICTED: tudor domain-containing protein 3 isoform X1 [Cucumis melo] >XP_00846... [more]
BLAST of Carg09877 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19950.14.3e-3149.63Domain of unknown function (DUF1767)[more]
BLAST of Carg09877 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q91W18|TDRD3_MOUSE1.4e-1043.82Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4[more]
sp|Q5ZMS6|TDRD3_CHICK2.4e-1042.70Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1[more]
sp|Q6P1U3|TDRD3_XENTR4.0e-1043.82Tudor domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=tdrd3 PE=2 SV... [more]
sp|Q6NYG6|TDRD3_DANRE1.3e-0831.65Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1[more]
sp|Q2HJG4|TDRD3_BOVIN6.0e-0641.27Tudor domain-containing protein 3 OS=Bos taurus OX=9913 GN=TDRD3 PE=2 SV=1[more]
BLAST of Carg09877 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CJF1|A0A1S3CJF1_CUCME3.5e-5985.61tudor domain-containing protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A1S4E471|A0A1S4E471_CUCME5.9e-5985.11tudor domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A0A0LUB7|A0A0A0LUB7_CUCSA5.6e-5783.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G399650 PE=4 SV=1[more]
tr|A0A2N9H9C2|A0A2N9H9C2_FAGSY1.6e-4365.22Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36081 PE=4 SV=1[more]
tr|A0A2I4HT46|A0A2I4HT46_9ROSI3.0e-4264.75tudor domain-containing protein 3 isoform X1 OS=Juglans regia OX=51240 GN=LOC109... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013894RMI1_N
IPR033472DUF1767
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09877-RACarg09877-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033472RecQ mediated genome instability protein, DUF1767SMARTSM01161DUF1767_2coord: 9..98
e-value: 2.2E-8
score: 43.9
NoneNo IPR availableGENE3DG3DSA:2.40.50.770coord: 95..156
e-value: 4.1E-12
score: 47.7
NoneNo IPR availablePANTHERPTHR13681FAMILY NOT NAMEDcoord: 3..139
NoneNo IPR availablePANTHERPTHR13681:SF24TUDOR DOMAIN-CONTAINING PROTEIN 3coord: 3..139
IPR013894RecQ mediated genome instability protein, N-terminalPFAMPF08585RMI1_Ncoord: 39..139
e-value: 1.2E-11
score: 44.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09877Csa1G399650Cucumber (Chinese Long) v2carcuB0134
Carg09877MELO3C025305Melon (DHL92) v3.5.1carmeB0131
Carg09877CSPI01G19640Wild cucumber (PI 183967)carcpiB0140
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09877Silver-seed gourdcarcarB041
Carg09877Silver-seed gourdcarcarB150
Carg09877Silver-seed gourdcarcarB152
Carg09877Cucumber (Gy14) v2carcgybB0134
Carg09877Cucumber (Gy14) v2carcgybB0137
Carg09877Cucumber (Gy14) v2carcgybB0142
Carg09877Cucumber (Gy14) v1carcgyB0153
Carg09877Cucurbita maxima (Rimu)carcmaB0166
Carg09877Cucurbita maxima (Rimu)carcmaB0169
Carg09877Cucurbita maxima (Rimu)carcmaB0170
Carg09877Cucurbita maxima (Rimu)carcmaB0171
Carg09877Cucurbita moschata (Rifu)carcmoB0172
Carg09877Cucurbita moschata (Rifu)carcmoB0175
Carg09877Cucurbita moschata (Rifu)carcmoB0176
Carg09877Cucurbita moschata (Rifu)carcmoB0179
Carg09877Cucurbita pepo (Zucchini)carcpeB0190
Carg09877Cucurbita pepo (Zucchini)carcpeB0181
Carg09877Cucurbita pepo (Zucchini)carcpeB0185
Carg09877Cucurbita pepo (Zucchini)carcpeB0186
Carg09877Wild cucumber (PI 183967)carcpiB0143
Carg09877Wild cucumber (PI 183967)carcpiB0146
Carg09877Cucumber (Chinese Long) v2carcuB0143
Carg09877Cucumber (Chinese Long) v2carcuB0139
Carg09877Cucumber (Chinese Long) v3carcucB0144
Carg09877Cucumber (Chinese Long) v3carcucB0147
Carg09877Cucumber (Chinese Long) v3carcucB0151
Carg09877Bottle gourd (USVL1VR-Ls)carlsiB111
Carg09877Bottle gourd (USVL1VR-Ls)carlsiB114
Carg09877Bottle gourd (USVL1VR-Ls)carlsiB115
Carg09877Melon (DHL92) v3.5.1carmeB0133
Carg09877Melon (DHL92) v3.6.1carmedB0135
Carg09877Melon (DHL92) v3.6.1carmedB0137
Carg09877Watermelon (Charleston Gray)carwcgB0123
Carg09877Watermelon (Charleston Gray)carwcgB0124
Carg09877Watermelon (Charleston Gray)carwcgB0125
Carg09877Watermelon (97103) v1carwmB0123
Carg09877Watermelon (97103) v1carwmB0125
Carg09877Watermelon (97103) v1carwmB0126
Carg09877Watermelon (97103) v2carwmbB0137
Carg09877Watermelon (97103) v2carwmbB0131
Carg09877Watermelon (97103) v2carwmbB0133
Carg09877Watermelon (97103) v2carwmbB0135
Carg09877Wax gourdcarwgoB0165
Carg09877Wax gourdcarwgoB0154