Carg09774 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09774
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_023 : 868546 .. 869284 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTGTGTTTATAACAATTTATTTGTAGCTGTTATTTGTATTCCCTTTTCTTTGGTTATAAATGAAAAAAAATCCATTTCTTTTATAAATATTGAGAATTGTTGCAAATATTTATTTCTAGCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAGTCCCAGAAGGCGCTGCTTGTTGATTCGATTTTACAGAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

mRNA sequence

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

Coding sequence (CDS)

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

Protein sequence

MKNKNKLMGERAAKMENLTKPAEGIKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGNRTLNMPTTTSSALAAGAILFLFIIVSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGSVTYTLSLELDVLNSVAAHGGDRNKLDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC

Homology

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_023531074.1 (uncharacterized protein LOC111793435 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-11
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 538 SLNNSITSAIDVLNSVAAHGGDRNLLKSKQRMEFIQRWNLFKYKLDKVVSAMSHFDFEMA 597

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           LYY+RSSDHD         ++ N  Q L  +L C
Sbjct: 598 LYYIRSSDHDLYTLHS---IVYNASQELEASLVC 628

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_022970603.1 (uncharacterized protein LOC111469537 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSV+AHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 542 SLNNSITSAIDVLNSVSAHGGDRNLLKSKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 601

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           LYY+RSSDHD         ++ N  Q L  +L C
Sbjct: 602 LYYIRSSDHDLYTLHS---IVYNASQELEASLIC 632

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_022928597.1 (uncharacterized protein LOC111435452 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 545 SLNNSITSAIDVLNSVAAHGGDRNLLKSKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 604

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           L+Y+RSSDHD         ++ N  Q L  +L C
Sbjct: 605 LHYIRSSDHDLYTLHS---IVYNASQELEASLVC 635

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_022152160.1 (uncharacterized protein LOC111019949 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 171
           ++ ++++  +DVL+SVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 541 ALNHSITSVIDVLDSVAAHGGDRNLLKPKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 600

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_012082994.1 (uncharacterized protein LOC105642693 [Jatropha curcas] >KDP45479.1 hypothetical protein JCGZ_09728 [Jatropha curcas])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 109 QRCTAGRKYV-GSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           QR  A R  +  S+ Y+++  +DVL S+  HGGDRN                   KLDK 
Sbjct: 537 QRDAARRNVILTSMNYSITSAIDVLESIVGHGGDRNLLKQNQHAEFIQRWNLFKYKLDKA 596

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SAMSHFDFEMALYY+RSSDHD
Sbjct: 597 VSAMSHFDFEMALYYLRSSDHD 618

[Close]

BLAST of Carg09774 vs. TAIR10
Match: AT3G28720.1 (unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.3e-07
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGD-------------------RNKLDKVLSAMSHFDFEMA 171
           S+  T++  +DV++S  A+GGD                   + KLDK +SA+SH +FEMA
Sbjct: 558 SLNTTITSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMA 617

[Close]

BLAST of Carg09774 vs. TrEMBL
Match: tr|A0A1R3I9C6|A0A1R3I9C6_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13835 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 109 QRCTAGRKY-VGSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           Q+  A R + + S+ Y+++  +DVL SV AHGGDRN                   KLDKV
Sbjct: 537 QKDAARRNFLLTSLNYSITSAIDVLESVDAHGGDRNLLKQNQHVEFVQRWHLFKYKLDKV 596

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SA+SHFDFEMALYY++SSDHD
Sbjct: 597 VSALSHFDFEMALYYLKSSDHD 618

[Close]

BLAST of Carg09774 vs. TrEMBL
Match: tr|A0A067LM44|A0A067LM44_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09728 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 109 QRCTAGRKYV-GSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           QR  A R  +  S+ Y+++  +DVL S+  HGGDRN                   KLDK 
Sbjct: 537 QRDAARRNVILTSMNYSITSAIDVLESIVGHGGDRNLLKQNQHAEFIQRWNLFKYKLDKA 596

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SAMSHFDFEMALYY+RSSDHD
Sbjct: 597 VSAMSHFDFEMALYYLRSSDHD 618

[Close]

BLAST of Carg09774 vs. TrEMBL
Match: tr|A0A2C9UVM9|A0A2C9UVM9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G108800 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 171
           S+ Y+++  +DVL S+AAHGGDRN                   KLDK +SAMSH DFEMA
Sbjct: 547 SLNYSITSAIDVLESIAAHGGDRNLLKQNQHVEFIQRWNLFKYKLDKAVSAMSHLDFEMA 606

[Close]

BLAST of Carg09774 vs. TrEMBL
Match: tr|A0A1U8I3T0|A0A1U8I3T0_GOSHI (uncharacterized protein LOC107892335 OS=Gossypium hirsutum OX=3635 GN=LOC107892335 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 102 VMGFVLWQRCTAGRKY-VGSVTYTLSLELDVLNSVAAHGGDRN----------------- 161
           VM     Q+  A R + + S+ Y+L+  +DVL S+ AHGGDRN                 
Sbjct: 529 VMSLSFVQKDAARRNFLLTSLNYSLTSAIDVLESIDAHGGDRNLLKQKQHVEFIQRWHLF 588

Query: 162 --KLDKVLSAMSHFDFEMALYYVRSSDHD 171
             KLDK +SA+SHFDFEMA YY++SSDHD
Sbjct: 589 RYKLDKAVSALSHFDFEMAFYYIKSSDHD 617

[Close]

BLAST of Carg09774 vs. TrEMBL
Match: tr|A0A1R3I4B7|A0A1R3I4B7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25162 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 109 QRCTAGRKY-VGSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           Q+  A R + + S+ Y+++  +DVL SV AHGGDRN                   KLDKV
Sbjct: 641 QKDAARRNFLLTSLNYSITSAIDVLESVDAHGGDRNLLKQNQHVEFIQRWHLFKYKLDKV 700

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SA+SHFDFEMA YY++SSDHD
Sbjct: 701 VSALSHFDFEMAFYYLKSSDHD 722

The following BLAST results are available for this feature:

BLAST of Carg09774 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531074.1	7.7e-11	47.87	uncharacterized protein LOC111793435 [Cucurbita pepo subsp. pepo]	[more]
XP_022970603.1	2.2e-10	46.81	uncharacterized protein LOC111469537 [Cucurbita maxima]	[more]
XP_022928597.1	2.9e-10	46.81	uncharacterized protein LOC111435452 [Cucurbita moschata]	[more]
XP_022152160.1	3.8e-10	55.71	uncharacterized protein LOC111019949 [Momordica charantia]	[more]
XP_012082994.1	1.1e-09	48.78	uncharacterized protein LOC105642693 [Jatropha curcas] >KDP45479.1 hypothetical ...	[more]

BLAST of Carg09774 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28720.1	6.3e-07	38.57	unknown protein	[more]

BLAST of Carg09774 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09774 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3I9C6\|A0A1R3I9C6_COCAP	7.4e-10	48.78	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13835 PE=4 ...	[more]
tr\|A0A067LM44\|A0A067LM44_JATCU	7.4e-10	48.78	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09728 PE=4 SV=1	[more]
tr\|A0A2C9UVM9\|A0A2C9UVM9_MANES	7.4e-10	52.86	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G108800 PE=4 SV=...	[more]
tr\|A0A1U8I3T0\|A0A1U8I3T0_GOSHI	1.6e-09	44.94	uncharacterized protein LOC107892335 OS=Gossypium hirsutum OX=3635 GN=LOC1078923...	[more]
tr\|A0A1R3I4B7\|A0A1R3I4B7_9ROSI	2.1e-09	47.56	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25162 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09774-RA	Carg09774-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31515	FAMILY NOT NAMED	coord: 109..173
None	No IPR available	PANTHER	PTHR31515:SF3	SUBFAMILY NOT NAMED	coord: 109..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09774	Cucsa.339060	Cucumber (Gy14) v1	carcgyB0506
Carg09774	Cp4.1LG04g01450	Cucurbita pepo (Zucchini)	carcpeB0615
Carg09774	Bhi11G002522	Wax gourd	carwgoB0522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09774	Silver-seed gourd	carcarB250
Carg09774	Silver-seed gourd	carcarB299
Carg09774	Cucumber (Gy14) v2	carcgybB0444
Carg09774	Cucumber (Gy14) v2	carcgybB0446
Carg09774	Cucumber (Gy14) v1	carcgyB0504
Carg09774	Cucurbita maxima (Rimu)	carcmaB0606
Carg09774	Cucurbita maxima (Rimu)	carcmaB0607
Carg09774	Cucurbita moschata (Rifu)	carcmoB0591
Carg09774	Cucurbita moschata (Rifu)	carcmoB0592
Carg09774	Cucurbita pepo (Zucchini)	carcpeB0609
Carg09774	Cucurbita pepo (Zucchini)	carcpeB0613
Carg09774	Wild cucumber (PI 183967)	carcpiB0472
Carg09774	Wild cucumber (PI 183967)	carcpiB0475
Carg09774	Cucumber (Chinese Long) v2	carcuB0467
Carg09774	Cucumber (Chinese Long) v2	carcuB0470
Carg09774	Cucumber (Chinese Long) v3	carcucB0468
Carg09774	Cucumber (Chinese Long) v3	carcucB0470
Carg09774	Bottle gourd (USVL1VR-Ls)	carlsiB393
Carg09774	Bottle gourd (USVL1VR-Ls)	carlsiB394
Carg09774	Melon (DHL92) v3.5.1	carmeB0443
Carg09774	Melon (DHL92) v3.6.1	carmedB0443
Carg09774	Melon (DHL92) v3.6.1	carmedB0445
Carg09774	Watermelon (Charleston Gray)	carwcgB0425
Carg09774	Watermelon (Charleston Gray)	carwcgB0426
Carg09774	Watermelon (Charleston Gray)	carwcgB0429
Carg09774	Watermelon (97103) v1	carwmB0430
Carg09774	Watermelon (97103) v1	carwmB0431
Carg09774	Watermelon (97103) v1	carwmB0436
Carg09774	Watermelon (97103) v2	carwmbB0456
Carg09774	Watermelon (97103) v2	carwmbB0462
Carg09774	Wax gourd	carwgoB0524