Carg09694 (gene) Silver-seed gourd

NameCarg09694
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_023 : 369057 .. 369632 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTGATAACAAGTATTCATAAGCTTCGATCGTGTGACGTTAGTTTTAGTGGTCAACTAGTCAATTGGCGAGTTGTGGATTTGAACTTAGGGCTCGGGTTGAATATGTTTGACATGTCGGCCCCTAGAATTGTAGATCACTTGCTCGACGATGAGGACGACGATTTATATACGGAGAATCTCGAGGGAATTCAAGTTCAATCACGTGGTAGCAATGATGAAATGGGTTTCTGCCACGTGGACGTTATGCTGGAACCTGTTGTAGAGGATAACCAAGAATGGTTGTTGGTGGGTGAAATGTAAATATTATGTAATTATCATATAAAAAATTTGAAATTGCTGTAATTAACGTAATTACTTGATTAATTCAATAATTACTTCATTTTTAATTAATTCCATCCACTAAAAATTAGAAGGTTTAAAGGATTGTGAGGATCAAATTTAGAAGGAAAAGATAGAAGATGAACTCTACGGTATATTTTTCTCACACTGATTACCGCAGAAGAGGAGCAGCGCTTCATGAAAATGGAGGATGGATTTGGAGAAGCCATTCCCAACGGCTCCATGTTCTAA

mRNA sequence

ATGTCGTTGATAACAAGTATTCATAAGCTTCGATCGTGTGACGTTAGTTTTAGTGGTCAACTAGTCAATTGGCGAGTTGTGGATTTGAACTTAGGGCTCGGGTTGAATATGTTTGACATGTCGGCCCCTAGAATTGTAGATCACTTGCTCGACGATGAGGACGACGATTTATATACGGAGAATCTCGAGGGAATTCAAGTTCAATCACGTGGTAGCAATGATGAAATGGGTTTCTGCCACGTGGACGTTATGCTGGAACCTGTTGTAGAGGATAACCAAGAATGGTTGTTGGTGGAAGAGGAGCAGCGCTTCATGAAAATGGAGGATGGATTTGGAGAAGCCATTCCCAACGGCTCCATGTTCTAA

Coding sequence (CDS)

ATGTCGTTGATAACAAGTATTCATAAGCTTCGATCGTGTGACGTTAGTTTTAGTGGTCAACTAGTCAATTGGCGAGTTGTGGATTTGAACTTAGGGCTCGGGTTGAATATGTTTGACATGTCGGCCCCTAGAATTGTAGATCACTTGCTCGACGATGAGGACGACGATTTATATACGGAGAATCTCGAGGGAATTCAAGTTCAATCACGTGGTAGCAATGATGAAATGGGTTTCTGCCACGTGGACGTTATGCTGGAACCTGTTGTAGAGGATAACCAAGAATGGTTGTTGGTGGAAGAGGAGCAGCGCTTCATGAAAATGGAGGATGGATTTGGAGAAGCCATTCCCAACGGCTCCATGTTCTAA

Protein sequence

MSLITSIHKLRSCDVSFSGQLVNWRVVDLNLGLGLNMFDMSAPRIVDHLLDDEDDDLYTENLEGIQVQSRGSNDEMGFCHVDVMLEPVVEDNQEWLLVEEEQRFMKMEDGFGEAIPNGSMF
BLAST of Carg09694 vs. NCBI nr
Match: XP_022154169.1 (uncharacterized protein LOC111021483 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 26  VVDLNLGLGLNMFDMSAPRIVDHLLD------DEDD-----DLYTENLEGIQVQSRGSND 85
           VVD N    LNMF+ SA R VDHL +      DEDD     +L  ENLEG  VQS G +D
Sbjct: 65  VVDSNSQPELNMFNSSASRTVDHLSNNDCWDGDEDDHCDHGNLERENLEGSGVQSNGDDD 124

Query: 86  EMGFCHVDVMLEPVVEDNQEWLLVEEEQ 103
           EMGFCHV+++L   +E +QEW LV E +
Sbjct: 125 EMGFCHVELVLNHALEHDQEWCLVGENE 152

BLAST of Carg09694 vs. NCBI nr
Match: XP_010250884.2 (PREDICTED: uncharacterized protein LOC104592990 [Nelumbo nucifera])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 9   KLRSCDVSFSGQLVNWRVVDLNLGLGLNMFDMSAPRIVDHLLDD-EDDDLYTENLEG--- 68
           KLRSCDV    +LV WRVVD N G  L    +SA  I++HL +D  DDD   E+  G   
Sbjct: 70  KLRSCDVVTDHRLVAWRVVD-NRGWELKCAGVSATEILNHLSNDLWDDDGEVEDYAGDVE 129

Query: 69  ---------IQVQSRGSNDE----MGFCHVDVMLEPVVEDNQEWLLVEE 101
                    I+  + G  D+    M FC V  +LE V + ++ W LV E
Sbjct: 130 EQQEIPMREIEEVNNGVEDDDDDCMSFCDVGFVLEQVEDGDEGWCLVGE 177

BLAST of Carg09694 vs. TrEMBL
Match: tr|A0A1U7ZHB3|A0A1U7ZHB3_NELNU (uncharacterized protein LOC104592990 OS=Nelumbo nucifera OX=4432 GN=LOC104592990 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 9   KLRSCDVSFSGQLVNWRVVDLNLGLGLNMFDMSAPRIVDHLLDD-EDDDLYTENLEG--- 68
           KLRSCDV    +LV WRVVD N G  L    +SA  I++HL +D  DDD   E+  G   
Sbjct: 70  KLRSCDVVTDHRLVAWRVVD-NRGWELKCAGVSATEILNHLSNDLWDDDGEVEDYAGDVE 129

Query: 69  ---------IQVQSRGSNDE----MGFCHVDVMLEPVVEDNQEWLLVEE 101
                    I+  + G  D+    M FC V  +LE V + ++ W LV E
Sbjct: 130 EQQEIPMREIEEVNNGVEDDDDDCMSFCDVGFVLEQVEDGDEGWCLVGE 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154169.11.1e-1051.14uncharacterized protein LOC111021483 [Momordica charantia][more]
XP_010250884.22.0e-0438.53PREDICTED: uncharacterized protein LOC104592990 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1U7ZHB3|A0A1U7ZHB3_NELNU1.3e-0438.53uncharacterized protein LOC104592990 OS=Nelumbo nucifera OX=4432 GN=LOC104592990... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09694-RACarg09694-RAmRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09694Cp4.1LG03g07250Cucurbita pepo (Zucchini)carcpeB0613
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09694Wax gourdcarwgoB0523
Carg09694Wax gourdcarwgoB0526
Carg09694Silver-seed gourdcarcarB388
Carg09694Silver-seed gourdcarcarB397
Carg09694Silver-seed gourdcarcarB444
Carg09694Silver-seed gourdcarcarB446
Carg09694Cucumber (Gy14) v2carcgybB0442
Carg09694Cucumber (Gy14) v2carcgybB0443
Carg09694Cucumber (Gy14) v2carcgybB0447
Carg09694Cucumber (Gy14) v1carcgyB0503
Carg09694Cucumber (Gy14) v1carcgyB0505
Carg09694Cucurbita maxima (Rimu)carcmaB0603
Carg09694Cucurbita maxima (Rimu)carcmaB0604
Carg09694Cucurbita maxima (Rimu)carcmaB0605
Carg09694Cucurbita maxima (Rimu)carcmaB0607
Carg09694Cucurbita maxima (Rimu)carcmaB0609
Carg09694Cucurbita moschata (Rifu)carcmoB0588
Carg09694Cucurbita moschata (Rifu)carcmoB0589
Carg09694Cucurbita moschata (Rifu)carcmoB0590
Carg09694Cucurbita moschata (Rifu)carcmoB0592
Carg09694Cucurbita moschata (Rifu)carcmoB0593
Carg09694Cucurbita pepo (Zucchini)carcpeB0610
Carg09694Cucurbita pepo (Zucchini)carcpeB0611
Carg09694Cucurbita pepo (Zucchini)carcpeB0614
Carg09694Wild cucumber (PI 183967)carcpiB0471
Carg09694Wild cucumber (PI 183967)carcpiB0474
Carg09694Cucumber (Chinese Long) v2carcuB0466
Carg09694Cucumber (Chinese Long) v2carcuB0469
Carg09694Cucumber (Chinese Long) v3carcucB0466
Carg09694Cucumber (Chinese Long) v3carcucB0467
Carg09694Cucumber (Chinese Long) v3carcucB0471
Carg09694Bottle gourd (USVL1VR-Ls)carlsiB392
Carg09694Bottle gourd (USVL1VR-Ls)carlsiB396
Carg09694Bottle gourd (USVL1VR-Ls)carlsiB397
Carg09694Melon (DHL92) v3.5.1carmeB0441
Carg09694Melon (DHL92) v3.5.1carmeB0442
Carg09694Watermelon (Charleston Gray)carwcgB0424
Carg09694Watermelon (Charleston Gray)carwcgB0428
Carg09694Watermelon (Charleston Gray)carwcgB0430
Carg09694Watermelon (97103) v1carwmB0429
Carg09694Watermelon (97103) v1carwmB0437
Carg09694Watermelon (97103) v2carwmbB0459
Carg09694Watermelon (97103) v2carwmbB0460
Carg09694Watermelon (97103) v2carwmbB0461