Carg09657 (gene) Silver-seed gourd

Overview
NameCarg09657
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA double-strand break repair rad50 ATPase
LocationCucurbita_argyrosperma_scaffold_023 : 211975 .. 215090 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGCGTTGGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCGGCTTCAATCTTCAGGCGCAACGTCAAACACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAAGTAATTTTTTCTTTTAAATTCTTAGTTTATTTTCTTGTTTGGTTCATATTTGTTTTCTTGAAGTTCATTTGTATTAGTGCTGTCGGAATGAATCAATAGACCTTAGCATTTGGTTCTTGTTGGAAATGATTGTGTGTGTTAGGAATTTAATACGCAGGCATTTGGAGTATTCATGTTTGTTGCAATTGCGTTCCGGCGCTGGGTTTATTGTTGGTTAACCAAAAGAAAACCTGCTTTGAATTCAATTTGAGTAAATCTTTACTCTCTGGGATTAATGGAAAGGGAGAGAATCACTAGGGTGACTGATTTTGGTTGTGTGTTTTGGTGGAAATCCAAGAAAGAGGTCATTTGGAGACGCATCCAAGATAAAAAAATATTGGGGAAATTAACTAATATAGGAGATCAACAAGGCTAAATCAGTCGGAAATGAAGTTCTCCTGGCTAAAGGTTTCTCTAGAGATCGAGGATTTGTGGCATCAAATTATTGAAGAAAAATTTGATGTTGATTGGGTGAGGTTACAAATGTGAAGAGAAATAAGTTGCTGGTAGAACCCCTCCATGTTTAGACTTGTGATCTAACAATTCTCAGTAGGAAATGTCATGAAGATTTCCTTCTGCAATAACAGATGGAAGAGAATCATCTCCTGAGGTGTATGTTTTGGAGAATTTCAACTGTGGCTAATCTGTTAGATGGATGCATTCACTGTGAAGGGTTTTCTGGATGAGAAGTAAATTCCTGGAAATTTCTATGAGAAAATATTTTTCAGGTGAAGAAGCAAGCAAATATGATGGCTTTGCTTGCGAAAGACCTAGCAACAAGAAGGATATTAAAGTACGGATTCTAAAATCATCTGGATGTTCTGAAACGTGAAAAGAAGAGGGTTTGAAGAGAAATCCATCAAAGTTGGTATGAAATGGAAAGATGCCGCAGAAGTTTCAAGTTTTTTCTTTCTGGACTTCGCGGTTTTGAAGCCATGAATACTACCACTAGGACTGCAGAAAAGGTGTCCTGATAGGGCATTTCCGCTTCGTCCAGTTTTTTTTTTTTTTTTGTAATGCCAAGGAGGAGAGCCAACTACCAGTTTTTTTTTCATTCTGATTTATCTCACATGTTGGAGCACAAACTTGGGGTATACACATATACACTGGGAATTTCTTAATTCGTTAAAAAACTCTTGAGTAGATGCTGTGGGTACTCAATTTAAAGAAGCATATGAAAATTGCTCTGCCCAACTTAATTATGTCCATACTGTGGTAGTTATGGTTGGAAGGTAACTATTAAAGATTCAATAATAAGGAGAGGAATAGGATGAGTAGAGGAAATTCTTGAATAAGAGTAAAGCTCTGGGTAGAGAGATTGATGTTTCTTTGAAGGTAGGTTTGATAATCATTTGTTCAATTGGGATATTATGGGCATGACCGAAGTTAGAAATGTTTAGAAATGGAAAGAACATATATTGATAAATAAGATAATATTTCCCTTGGCAAGAGGTTGTTTAAATGAAGATTTTAAAAGATGGACAATGCATAGCAATATTGATAATGAAGGAAATGTTTGCATTTTCCTAACACGTATTAGTCTTGTGCTTATGGGGGTGAGTGTTAGCAAGAAGGAAAAGGAAAAGAGGGTAAAGATATGGTTGAAAAATGAAGGTTACAGTACCTTAATTTAGTGGCAGCTTTTTGCGTTTCAAACATTTCCTGGCCGTCAGCTCTCATGAGGAACTCCTTAAAAACTTTTGAGCTGTATTTTCGGTACGTATTCCCTAATGATTGGTAATGGATACTTATAAATTAGTCAGTCGTGGTTTTGGAGTAGGCTTGCAGTGCAAAGAGAACCGCTAGAGAATCTTATCTTCTTGTCAAAGGTTATCTAGACCATTACTCGTCTTCTAGAATTCTAAGGAAAGTTTCCTTTGGTCTTGGAAAGTTAAAAAACAGATTGAGAAAGGGACTTGTTGATTGATTGATTGGTTAGGTCTATCGTCTTCGTTCTAATATTATTAGTTTATACTAATTTTTCTTTTCATTGATGTCAACTGGGGATGTACTTTTCTCGAATCTTGATCAACTGTCCAAATTGATTCCTGGAATTTGCTTTTGGTTTAGATTGATTGTTGTGTTGGAGTTCGTGTTCAATCCGTCGCTAGACGCTCAATTTATTAATGTTTCATATGACAATAGCAAGTAAAGGACATGAGAATAAAGTAATAGTGGAACTCCAGAGCCTAATAGAAATGTACTATTTACAGTATCATTGTATTGCTGTTTGATGAAGATTACAGGCTACCTAGACTTTCAAGAGTTTTGGCATTCTCCTCTCGTAGTCACTCTAGTCACTTCCATGTAACTAGTTGGCTGCCCTCTCTCCTCTCAGTCGTCCTTTTCTATTGTCAATAGTATTGTTATAAAATGCCCTGATTGTACCTATCCCTGCTTGCAACTAACTTTCACTTAAAATGTCCTTCTTGGCCATCTTTCTTGGGATTGCCATCTTTCTTGGGAATACTTTATGGACTGGGAAGTTGGGCGCCTATTGGCTTACTTCCTGTGCCTCTGGCTTCTCATATCTGTTTCTTTGTTTTTAATTAATCAATTAATTTATATGATATTAGACCCAATTGCATAATGTTTAGCTAGTTTAATGCAGTGTAGCTACGTTCGGCCAGAAGAATGTTAAAACCCATTCGAGTTGGCGAGTGAAGAATATGATAGATAGTATAAATAAAAAGTAATAGAAGAAAAGATATCAAGCTTATGGGTTATGGCGATTTTCATAGAACCTCTGTCTTTAAGATGTCTATTTGGCATGTGAATGCAACAGGCTGCTGCTCCTTTTGTAGGCCATGCTTGTGTAATGTAATATGACTGTGATGTTATTCTTTCAGGACTGTGGAGAAGGCAACCAAGGAGCTGGAAGCCAAAACTTCTCAGAAGGATATTCCAAAAGATGACAAGCCCTAG

mRNA sequence

ATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGCGTTGGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCGGCTTCAATCTTCAGGCGCAACGTCAAACACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAAGACTGTGGAGAAGGCAACCAAGGAGCTGGAAGCCAAAACTTCTCAGAAGGATATTCCAAAAGATGACAAGCCCTAG

Coding sequence (CDS)

ATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGCGTTGGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCGGCTTCAATCTTCAGGCGCAACGTCAAACACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAAGACTGTGGAGAAGGCAACCAAGGAGCTGGAAGCCAAAACTTCTCAGAAGGATATTCCAAAAGATGACAAGCCCTAG

Protein sequence

MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKELEAKTSQKDIPKDDKP
Homology
[Close]
BLAST of Carg09657 vs. NCBI nr
Match: XP_022935264.1 (uncharacterized protein LOC111442202 [Cucurbita moschata] >XP_022935265.1 uncharacterized protein LOC111442202 [Cucurbita moschata] >XP_022983554.1 uncharacterized protein LOC111482124 [Cucurbita maxima] >XP_022983555.1 uncharacterized protein LOC111482124 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 4.6e-28
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL
Sbjct: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          EAKTSQKDIPKDDK
Sbjct: 61 EAKTSQKDIPKDDK 74

[Close]
BLAST of Carg09657 vs. NCBI nr
Match: XP_022156517.1 (uncharacterized protein LOC111023400 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          MALTNFILTVAGV AV+LLLRSDVKQSASIFRRNVKHIRQW+EEESASASKTVEKATKEL
Sbjct: 1  MALTNFILTVAGVSAVILLLRSDVKQSASIFRRNVKHIRQWIEEESASASKTVEKATKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          EAK SQKDIPKDDK
Sbjct: 61 EAKASQKDIPKDDK 74

[Close]
BLAST of Carg09657 vs. NCBI nr
Match: XP_023531886.1 (uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1   MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
           MALTNFILTVAGV AVV+LLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL
Sbjct: 60  MALTNFILTVAGVSAVVVLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 119

Query: 61  EAKTSQKDIPKDDK 75
           E+KT  KDIPKDDK
Sbjct: 120 ESKTPHKDIPKDDK 133

[Close]
BLAST of Carg09657 vs. NCBI nr
Match: AFK42508.1 (unknown [Lotus japonicus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          M +TNF+LTVAGV AVVLLLRSDVKQSASIFRRNVKHIR+WLEEE+ S+SKTVEK+TKEL
Sbjct: 1  MGITNFVLTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRKWLEEENISSSKTVEKSTKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          E K   KDIPK+DK
Sbjct: 61 ETKVPPKDIPKEDK 74

[Close]
BLAST of Carg09657 vs. NCBI nr
Match: XP_011651551.1 (PREDICTED: uncharacterized protein LOC101219831 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          MALTNFILTVAGV AVVLLLRSDVKQSASIFRRNVKHIR+WLEEE    SK VE  TKEL
Sbjct: 1  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRKWLEEE----SKAVENTTKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          E+KTSQKDIPKDDK
Sbjct: 61 ESKTSQKDIPKDDK 70

[Close]
BLAST of Carg09657 vs. TAIR10
Match: AT5G14105.1 (unknown protein)

HSP 1 Score: 90.1 bits (222), Expect = 6.2e-19
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKA--TK 60
          M LTNFILTVAGVGAVV+LLRSDVKQS ++ RRNVKHIR WLEEES++AS    ++   K
Sbjct: 1  MGLTNFILTVAGVGAVVMLLRSDVKQSVTVLRRNVKHIRHWLEEESSAASSKAAESIKPK 60

Query: 61 ELEAKTSQKDIPKD 73
          E+E K  +KDIPK+
Sbjct: 61 EIEVKVPKKDIPKE 74

[Close]
BLAST of Carg09657 vs. TrEMBL
Match: tr|I3SQG6|I3SQG6_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.2e-22
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          M +TNF+LTVAGV AVVLLLRSDVKQSASIFRRNVKHIR+WLEEE+ S+SKTVEK+TKEL
Sbjct: 1  MGITNFVLTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRKWLEEENISSSKTVEKSTKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          E K   KDIPK+DK
Sbjct: 61 ETKVPPKDIPKEDK 74

[Close]
BLAST of Carg09657 vs. TrEMBL
Match: tr|I1N7U0|I1N7U0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100797786 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-21
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKAT-KE 60
          M LTNF+LTVAGV AVVLLLRSDVKQSASIFRRNVKHIR WLEEESA++SKT+EK+T KE
Sbjct: 1  MGLTNFVLTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESAASSKTMEKSTPKE 60

Query: 61 LEAKTSQKDIPKDDK 75
          LE+K   KDIPK+DK
Sbjct: 61 LESKVPPKDIPKEDK 75

[Close]
BLAST of Carg09657 vs. TrEMBL
Match: tr|A0A0B2QXN7|A0A0B2QXN7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_048242 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-21
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKAT-KE 60
          M LTNF+LTVAGV AVVLLLRSDVKQSASIFRRNVKHIR WLEEESA++SKT+EK+T KE
Sbjct: 1  MGLTNFVLTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESAASSKTMEKSTPKE 60

Query: 61 LEAKTSQKDIPKDDK 75
          LE+K   KDIPK+DK
Sbjct: 61 LESKVPPKDIPKEDK 75

[Close]
BLAST of Carg09657 vs. TrEMBL
Match: tr|A0A1S3BPI5|A0A1S3BPI5_CUCME (uncharacterized protein LOC103491799 OS=Cucumis melo OX=3656 GN=LOC103491799 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-21
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKATKEL 60
          MALTNFILTVAGV AVVLLLRSDVKQSA+IFRRNVK IR WLEEE    SK VEK TKEL
Sbjct: 1  MALTNFILTVAGVSAVVLLLRSDVKQSAAIFRRNVKQIRHWLEEE----SKAVEKTTKEL 60

Query: 61 EAKTSQKDIPKDDK 75
          E+KTSQKDIPKDDK
Sbjct: 61 ESKTSQKDIPKDDK 70

[Close]
BLAST of Carg09657 vs. TrEMBL
Match: tr|A0A2I4DY99|A0A2I4DY99_9ROSI (uncharacterized protein LOC108984565 OS=Juglans regia OX=51240 GN=LOC108984565 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEKAT-KE 60
          MALTN ILTVAGV AVVLLLRSDVKQSA++FRRNVKHIR WLEEESASASK  EKAT KE
Sbjct: 1  MALTNLILTVAGVSAVVLLLRSDVKQSAAVFRRNVKHIRHWLEEESASASKAAEKATPKE 60

Query: 61 LEAKTSQKDIPKDDK 75
          LE+K   KDIPK+DK
Sbjct: 61 LESKVPPKDIPKEDK 75

The following BLAST results are available for this feature:
BLAST of Carg09657 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935264.14.6e-28100.00uncharacterized protein LOC111442202 [Cucurbita moschata] >XP_022935265.1 unchar... [more]
XP_022156517.11.9e-2694.59uncharacterized protein LOC111023400 [Momordica charantia][more]
XP_023531886.11.6e-2593.24uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo][more]
AFK42508.11.1e-2181.08unknown [Lotus japonicus][more]
XP_011651551.11.9e-2186.49PREDICTED: uncharacterized protein LOC101219831 [Cucumis sativus][more]
BLAST of Carg09657 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14105.16.2e-1967.57unknown protein[more]
BLAST of Carg09657 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg09657 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|I3SQG6|I3SQG6_LOTJA7.2e-2281.08Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|I1N7U0|I1N7U0_SOYBN6.1e-2181.33Uncharacterized protein OS=Glycine max OX=3847 GN=100797786 PE=4 SV=1[more]
tr|A0A0B2QXN7|A0A0B2QXN7_GLYSO6.1e-2181.33Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_048242 PE=4 SV=1[more]
tr|A0A1S3BPI5|A0A1S3BPI5_CUCME8.0e-2185.14uncharacterized protein LOC103491799 OS=Cucumis melo OX=3656 GN=LOC103491799 PE=... [more]
tr|A0A2I4DY99|A0A2I4DY99_9ROSI1.0e-2082.67uncharacterized protein LOC108984565 OS=Juglans regia OX=51240 GN=LOC108984565 P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09657-RACarg09657-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..75
NoneNo IPR availablePANTHERPTHR35135FAMILY NOT NAMEDcoord: 1..74
NoneNo IPR availablePANTHERPTHR35135:SF1SUBFAMILY NOT NAMEDcoord: 1..74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09657MELO3C014894Melon (DHL92) v3.5.1carmeB0444
Carg09657ClCG05G013610Watermelon (Charleston Gray)carwcgB0428
Carg09657CSPI03G25450Wild cucumber (PI 183967)carcpiB0471
Carg09657Cucsa.054060Cucumber (Gy14) v1carcgyB0500
Carg09657CmaCh11G015110Cucurbita maxima (Rimu)carcmaB0605
Carg09657CmaCh14G007230Cucurbita maxima (Rimu)carcmaB0607
Carg09657CmoCh14G007380Cucurbita moschata (Rifu)carcmoB0592
Carg09657CmoCh11G016100Cucurbita moschata (Rifu)carcmoB0589
Carg09657Lsi07G014810Bottle gourd (USVL1VR-Ls)carlsiB399
Carg09657CsGy3G023880Cucumber (Gy14) v2carcgybB0443
Carg09657MELO3C014894.2Melon (DHL92) v3.6.1carmedB0446
Carg09657CsaV3_3G026940Cucumber (Chinese Long) v3carcucB0467
Carg09657Cla97C05G095120Watermelon (97103) v2carwmbB0459
Carg09657Bhi01G001616Wax gourdcarwgoB0526
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09657Carg15556Silver-seed gourdcarcarB397
The following block(s) are covering this gene:
GeneOrganismBlock
Carg09657Silver-seed gourdcarcarB388
Carg09657Cucumber (Gy14) v2carcgybB0442
Carg09657Cucurbita maxima (Rimu)carcmaB0604
Carg09657Cucurbita moschata (Rifu)carcmoB0588
Carg09657Cucurbita moschata (Rifu)carcmoB0590
Carg09657Cucurbita pepo (Zucchini)carcpeB0610
Carg09657Cucurbita pepo (Zucchini)carcpeB0613
Carg09657Cucurbita pepo (Zucchini)carcpeB0614
Carg09657Cucumber (Chinese Long) v2carcuB0466
Carg09657Cucumber (Chinese Long) v3carcucB0466
Carg09657Bottle gourd (USVL1VR-Ls)carlsiB397
Carg09657Melon (DHL92) v3.5.1carmeB0442
Carg09657Watermelon (Charleston Gray)carwcgB0430
Carg09657Watermelon (97103) v1carwmB0433
Carg09657Watermelon (97103) v1carwmB0437
Carg09657Watermelon (97103) v2carwmbB0460