Carg09568 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09568
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein 76
Location	Cucurbita_argyrosperma_scaffold_029 : 883049 .. 883648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTATTTGTAAACAATGGCATCCCACAATCAGAGCTACAAAGCTGGTGAAACCAAGGGCCGAGCTGAGGTATTTTCTTTATTTAAAAATGAATTATTTTCTAAATTAATTAATTATTATTATTATTTTAGGAGAAGACTAGTCAGGCGATGGGTACAATGGGGGACAAGGCCCATGGAGCAGCGGAGTCCACGAAAGAATGGGCCAAAGAGTCCAAAGATCAGACAGGAAGCTACATGTCGGATAAGGCCCAAGCGGCCCGAGAGAAGGCCCAATCTGGGAAGGAGACGACCGGAGGGATACTGGAGCAGACGGGCGAGAAAGTGAAGAGTATGGCCCAAGGAGCGGCGGAAGCTGTGAAAAGCACTTTTGGTATGGCCCACGATGATGACGTGGGCAAGGAGGGGACTGGGAGTGACACCACCACTAATCGTAGGGGCTAATTCGTAATTCTGTTGTTGGTTTTTGTTTTTTCTGCATGGTTTGTTGGTGTGTTGTGTTGTGTAACATTTCCCTCCCTTTTTGTTGGAGGTGGTGTTTGGTGGTCTGTATTCCAATAAGAACATCCTTTGTCTTTGCTAGCTCCTATTATCCATCTGC

mRNA sequence

ATCTATTTGTAAACAATGGCATCCCACAATCAGAGCTACAAAGCTGGTGAAACCAAGGGCCGAGCTGAGGAGAAGACTAGTCAGGCGATGGGTACAATGGGGGACAAGGCCCATGGAGCAGCGGAGTCCACGAAAGAATGGGCCAAAGAGTCCAAAGATCAGACAGGAAGCTACATGTCGGATAAGGCCCAAGCGGCCCGAGAGAAGGCCCAATCTGGGAAGGAGACGACCGGAGGGATACTGGAGCAGACGGGCGAGAAAGTGAAGAGTATGGCCCAAGGAGCGGCGGAAGCTGTGAAAAGCACTTTTGGTATGGCCCACGATGATGACGTGGGCAAGGAGGGGACTGGGAGTGACACCACCACTAATCGTAGGGGCTAATTCGTAATTCTGTTGTTGGTTTTTGTTTTTTCTGCATGGTTTGTTGGTGTGTTGTGTTGTGTAACATTTCCCTCCCTTTTTGTTGGAGGTGGTGTTTGGTGGTCTGTATTCCAATAAGAACATCCTTTGTCTTTGCTAGCTCCTATTATCCATCTGC

Coding sequence (CDS)

ATGGCATCCCACAATCAGAGCTACAAAGCTGGTGAAACCAAGGGCCGAGCTGAGGAGAAGACTAGTCAGGCGATGGGTACAATGGGGGACAAGGCCCATGGAGCAGCGGAGTCCACGAAAGAATGGGCCAAAGAGTCCAAAGATCAGACAGGAAGCTACATGTCGGATAAGGCCCAAGCGGCCCGAGAGAAGGCCCAATCTGGGAAGGAGACGACCGGAGGGATACTGGAGCAGACGGGCGAGAAAGTGAAGAGTATGGCCCAAGGAGCGGCGGAAGCTGTGAAAAGCACTTTTGGTATGGCCCACGATGATGACGTGGGCAAGGAGGGGACTGGGAGTGACACCACCACTAATCGTAGGGGCTAA

Protein sequence

MASHNQSYKAGETKGRAEEKTSQAMGTMGDKAHGAAESTKEWAKESKDQTGSYMSDKAQAAREKAQSGKETTGGILEQTGEKVKSMAQGAAEAVKSTFGMAHDDDVGKEGTGSDTTTNRRG

Homology

[Close]

BLAST of Carg09568 vs. NCBI nr
Match: XP_022953941.1 (late embryogenesis abundant protein 7 [Cucurbita moschata])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 116/121 (95.87%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MASHNQSYKAGETKGRAEEKTSQAMGTMGDKAHGAAESTKXXXXXXXXXXXXXXXXXXXX 60
           MASHNQSYKAGETKGRAEEKTSQAMGTMGDKAHGAAESTKXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASHNQSYKAGETKGRAEEKTSQAMGTMGDKAHGAAESTKXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSTFGMAHDDDVGKEGTGSDTTTNRR 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KSTFGMAHDDDVGKE  GSDTTT RR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKSTFGMAHDDDVGKE--GSDTTTYRR 119

Query: 121 G 122
           G
Sbjct: 121 G 119

[Close]

BLAST of Carg09568 vs. NCBI nr
Match: XP_022991581.1 (late embryogenesis abundant protein 7-like [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 100/121 (82.64%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MASHNQSYKAGETKGRAEEKTSQAMGTMGDKAHGAAESTKXXXXXXXXXXXXXXXXXXXX 60
           MASHN+ YK GE+KGRAEEKTSQAMG MGDKAHGAAES K         XXXXXXXXXXX
Sbjct: 1   MASHNERYKGGESKGRAEEKTSQAMGRMGDKAHGAAESKK-------EWXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSTFGMAHDDDVGKEGTGSDTTTNRR 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KSTFGMAHDDDVGKEGT  D TT RR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKSTFGMAHDDDVGKEGT--DPTTYRR 112

Query: 121 G 122
           G
Sbjct: 121 G 112

[Close]

BLAST of Carg09568 vs. NCBI nr
Match: XP_023548700.1 (late embryogenesis abundant protein 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 107/139 (76.98%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 1   MASHNQSYKAGETKGRAEEKTSQAMGTM------------------GDKAHGAAESTKXX 60
           MASHNQSYKAGETKGRAEEKTSQAMGTM                              XX
Sbjct: 1   MASHNQSYKAGETKGRAEEKTSQAMGTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSTFGMAH 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KSTFGMAH
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKSTFGMAH 120

Query: 121 DDDVGKEGTGSDTTTNRRG 122
           DDDVGKEGTGSDTTT RRG
Sbjct: 121 DDDVGKEGTGSDTTTYRRG 139

[Close]

BLAST of Carg09568 vs. NCBI nr
Match: POE87245.1 (late embryogenesis abundant protein 76 [Quercus suber])

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTMGDKA 33
          MASHNQSY+AGETKGRAEEKT+Q MG++GDKA
Sbjct: 17 MASHNQSYRAGETKGRAEEKTNQTMGSLGDKA 48

[Close]

BLAST of Carg09568 vs. NCBI nr
Match: XP_023871350.1 (late embryogenesis abundant protein 2-like [Quercus suber])

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTMGDKA 33
          MASHNQSY+AGETKGRAEEKT+Q MG++GDKA
Sbjct: 1  MASHNQSYRAGETKGRAEEKTNQTMGSLGDKA 32

[Close]

BLAST of Carg09568 vs. TAIR10
Match: AT3G15670.1 (Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTM 29
          MAS+ QSYKAGET+G+A+EKT QAMGTM
Sbjct: 1  MASNQQSYKAGETRGKAQEKTGQAMGTM 28

[Close]

BLAST of Carg09568 vs. Swiss-Prot
Match: sp|Q9LW12|LEA29_ARATH (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTM 29
          MAS+ QSYKAGET+G+A+EKT QAMGTM
Sbjct: 1  MASNQQSYKAGETRGKAQEKTGQAMGTM 28

[Close]

BLAST of Carg09568 vs. TrEMBL
Match: tr|A0A2P4K2N6|A0A2P4K2N6_QUESU (Late embryogenesis abundant protein 76 OS=Quercus suber OX=58331 GN=CFP56_67298 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-05
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTMGDKA 33
          MASHNQSY+AGETKGRAEEKT+Q MG++GDKA
Sbjct: 17 MASHNQSYRAGETKGRAEEKTNQTMGSLGDKA 48

[Close]

BLAST of Carg09568 vs. TrEMBL
Match: tr|A0A2P4JC89|A0A2P4JC89_QUESU (Late embryogenesis abundant protein 1 OS=Quercus suber OX=58331 GN=CFP56_70719 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTMGDKA 33
          MASHNQSY+A ETKGRAEEKT+Q MG++GDKA
Sbjct: 1  MASHNQSYRADETKGRAEEKTNQTMGSLGDKA 32

[Close]

BLAST of Carg09568 vs. TrEMBL
Match: tr|A0A2P4K2L4|A0A2P4K2L4_QUESU (Late embryogenesis abundant protein 76 OS=Quercus suber OX=58331 GN=CFP56_67299 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MASHNQSYKAGETKGRAEEKTSQAMGTMGDKA 33
          MASHNQSY+A ETKGRAEEKT+Q MG++GDKA
Sbjct: 1  MASHNQSYRADETKGRAEEKTNQTMGSLGDKA 32

The following BLAST results are available for this feature:

BLAST of Carg09568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953941.1	1.2e-17	95.87	late embryogenesis abundant protein 7 [Cucurbita moschata]	[more]
XP_022991581.1	1.5e-12	82.64	late embryogenesis abundant protein 7-like [Cucurbita maxima]	[more]
XP_023548700.1	2.9e-08	76.98	late embryogenesis abundant protein 7 [Cucurbita pepo subsp. pepo]	[more]
POE87245.1	6.7e-05	84.38	late embryogenesis abundant protein 76 [Quercus suber]	[more]
XP_023871350.1	6.7e-05	84.38	late embryogenesis abundant protein 2-like [Quercus suber]	[more]

BLAST of Carg09568 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15670.1	2.2e-05	78.57	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of Carg09568 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW12\|LEA29_ARATH	3.9e-04	78.57	Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 ...	[more]

BLAST of Carg09568 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4K2N6\|A0A2P4K2N6_QUESU	4.5e-05	84.38	Late embryogenesis abundant protein 76 OS=Quercus suber OX=58331 GN=CFP56_67298 ...	[more]
tr\|A0A2P4JC89\|A0A2P4JC89_QUESU	2.9e-04	81.25	Late embryogenesis abundant protein 1 OS=Quercus suber OX=58331 GN=CFP56_70719 P...	[more]
tr\|A0A2P4K2L4\|A0A2P4K2L4_QUESU	2.9e-04	81.25	Late embryogenesis abundant protein 76 OS=Quercus suber OX=58331 GN=CFP56_67299 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09568-RA	Carg09568-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	PANTHER	PTHR23241:SF81	SUBFAMILY NOT NAMED	coord: 1..66 coord: 60..116
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 1..66 coord: 60..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09568	Cla015386	Watermelon (97103) v1	carwmB1028
Carg09568	Csa7G433250	Cucumber (Chinese Long) v2	carcuB1041
Carg09568	MELO3C023400	Melon (DHL92) v3.5.1	carmeB0996
Carg09568	ClCG09G002690	Watermelon (Charleston Gray)	carwcgB1001
Carg09568	CSPI07G20830	Wild cucumber (PI 183967)	carcpiB1064
Carg09568	Cucsa.105230	Cucumber (Gy14) v1	carcgyB1144
Carg09568	CmaCh17G008420	Cucurbita maxima (Rimu)	carcmaB1419
Carg09568	CmaCh08G006690	Cucurbita maxima (Rimu)	carcmaB1424
Carg09568	CmoCh17G008140	Cucurbita moschata (Rifu)	carcmoB1376
Carg09568	Lsi02G027310	Bottle gourd (USVL1VR-Ls)	carlsiB937
Carg09568	Cp4.1LG12g07790	Cucurbita pepo (Zucchini)	carcpeB1424
Carg09568	CsGy7G019070	Cucumber (Gy14) v2	carcgybB1011
Carg09568	MELO3C023400.2	Melon (DHL92) v3.6.1	carmedB1008
Carg09568	CsaV3_7G032640	Cucumber (Chinese Long) v3	carcucB1074
Carg09568	Cla97C09G164830	Watermelon (97103) v2	carwmbB1089
Carg09568	Bhi09G000042	Wax gourd	carwgoB1204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09568	Watermelon (Charleston Gray)	carwcgB1004
Carg09568	Watermelon (97103) v1	carwmB1031
Carg09568	Watermelon (97103) v2	carwmbB1088
Carg09568	Silver-seed gourd	carcarB047
Carg09568	Silver-seed gourd	carcarB158
Carg09568	Silver-seed gourd	carcarB170
Carg09568	Silver-seed gourd	carcarB240
Carg09568	Silver-seed gourd	carcarB530
Carg09568	Silver-seed gourd	carcarB596
Carg09568	Cucumber (Gy14) v1	carcgyB1145
Carg09568	Cucurbita maxima (Rimu)	carcmaB1423
Carg09568	Cucurbita maxima (Rimu)	carcmaB1418
Carg09568	Cucurbita maxima (Rimu)	carcmaB1420
Carg09568	Cucurbita maxima (Rimu)	carcmaB1421
Carg09568	Cucurbita maxima (Rimu)	carcmaB1425
Carg09568	Cucurbita moschata (Rifu)	carcmoB1372
Carg09568	Cucurbita moschata (Rifu)	carcmoB1374
Carg09568	Cucurbita moschata (Rifu)	carcmoB1375
Carg09568	Cucurbita moschata (Rifu)	carcmoB1377
Carg09568	Cucurbita moschata (Rifu)	carcmoB1378
Carg09568	Cucurbita moschata (Rifu)	carcmoB1379
Carg09568	Cucurbita pepo (Zucchini)	carcpeB1423
Carg09568	Cucurbita pepo (Zucchini)	carcpeB1425
Carg09568	Cucurbita pepo (Zucchini)	carcpeB1426
Carg09568	Cucurbita pepo (Zucchini)	carcpeB1428
Carg09568	Cucurbita pepo (Zucchini)	carcpeB1429
Carg09568	Wild cucumber (PI 183967)	carcpiB1060
Carg09568	Cucumber (Chinese Long) v2	carcuB1036
Carg09568	Cucumber (Chinese Long) v3	carcucB1070
Carg09568	Bottle gourd (USVL1VR-Ls)	carlsiB939