Carg09402 (gene) Silver-seed gourd

Overview
NameCarg09402
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTubulin beta chain
LocationCucurbita_argyrosperma_scaffold_018 : 1105514 .. 1106658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAAGGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGGTATTACGTTCTCTGCTCTGTTCTTCGATCGTACATTCTCATCATTCTGCTTTGTGAATTCAAGGAGTTTGTTCTGTTTTTTTTTTTTAAATCCTCATTATACTCCTTCATCAATTCATTCGATCTGCTTGTTTCAATTGAACCTCTTCTTACTTCCTCATTCTACTGCTTCGTGAATTGAAAGAACCTGTAGATTTCTAATGAATTACTCGAAACATCGAAAACAATGCTTAGCGTTCGTCAAATTTCCTGAACATTTCTCTATCCAATATTCTCTGGTTTATCCAACGCATTTTAACTTTTCGTTACTCTTATCGAAATTTCTTTCGAAGTCATTACCGTGGATGCGGTTAAAAAAAGGAGATCAGATATCATCGGATTTGGTTTTCCTCAAAGCAGGGGAAGGCTACTGAGTGTGAGAACCCTCATTGACGTGAGTAATGGGAGAGGAAAATTTTGAGAAATCAACTGTTCTGTTTTCCTTGTTTCCTATTATTAGTAAATATGAATAACAAAGTGATGGTTGCTATAACTTTCTCAGATCCACGTCCGTTGCCCACTAAACTTGCTCTGGCAAGGTCACAGCTATTGCCTGTTACTCAAATCTCCGACAATTTTATTTTCTCTGCCTTGAAAACCATGATGATATGCTTTTTCTTCATTTTTACAATTTAAAATTTAATTCTAGCGAATTATGTATAGCGGTTGTCAGCAGAATCCTGATCTTGATATCCTAACTGCTTAA

mRNA sequence

ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAAGGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGTAAATATGAATAACAAAGTGATGGTTGCTATAACTTTCTCAGATCCACGTCCGTTGCCCACTAAACTTGCTCTGGCAAGCGGTTGTCAGCAGAATCCTGATCTTGATATCCTAACTGCTTAA

Coding sequence (CDS)

ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAAGGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGTAAATATGAATAACAAAGTGATGGTTGCTATAACTTTCTCAGATCCACGTCCGTTGCCCACTAAACTTGCTCTGGCAAGCGGTTGTCAGCAGAATCCTGATCTTGATATCCTAACTGCTTAA

Protein sequence

MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVNMNNKVMVAITFSDPRPLPTKLALASGCQQNPDLDILTA
Homology
[Close]
BLAST of Carg09402 vs. NCBI nr
Match: XP_004152649.1 (PREDICTED: tubulin beta chain [Cucumis sativus] >KGN62682.1 hypothetical protein Csa_2G368830 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. NCBI nr
Match: XP_008444814.1 (PREDICTED: tubulin beta chain [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. NCBI nr
Match: XP_022144149.1 (tubulin beta-6 chain [Momordica charantia])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. NCBI nr
Match: XP_022951577.1 (tubulin beta chain-like [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. NCBI nr
Match: XP_022962240.1 (tubulin beta chain-like [Cucurbita moschata] >XP_022996981.1 tubulin beta chain-like [Cucurbita maxima] >XP_023546226.1 tubulin beta chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. TAIR10
Match: AT1G75780.1 (tubulin beta-1 chain)

HSP 1 Score: 274.2 bits (700), Expect = 5.3e-74
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 132

[Close]
BLAST of Carg09402 vs. TAIR10
Match: AT1G20010.1 (tubulin beta-5 chain)

HSP 1 Score: 270.4 bits (690), Expect = 7.7e-73
Identity = 124/133 (93.23%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIGSKFWEVICDEHGID+TG+Y+GD ++DLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 132

[Close]
BLAST of Carg09402 vs. TAIR10
Match: AT5G12250.1 (beta-6 tubulin)

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-70
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGID TG+Y G  +SDLQLER+NVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG--NSDLQLERVNVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. TAIR10
Match: AT5G62690.1 (tubulin beta chain 2)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-69
Identity = 120/133 (90.23%), Postives = 126/133 (94.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD--SDLQLERINVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           +VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. TAIR10
Match: AT5G62700.1 (tubulin beta chain 3)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-69
Identity = 120/133 (90.23%), Postives = 126/133 (94.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGD--SDLQLERINVYYNEASCGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           +VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. Swiss-Prot
Match: sp|Q6VAF6|TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.6e-73
Identity = 126/133 (94.74%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TGKYNGD SSD+QLERI+VYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. Swiss-Prot
Match: sp|P12411|TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.6e-73
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 132

[Close]
BLAST of Carg09402 vs. Swiss-Prot
Match: sp|Q40665|TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 4.8e-72
Identity = 126/133 (94.74%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  SDLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD--SDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. Swiss-Prot
Match: sp|Q6VAF7|TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.8e-72
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHG+D TGKYNGD  SDLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGD--SDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. Swiss-Prot
Match: sp|P28551|TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max OX=3847 GN=TUBB PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-71
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  S+LQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD--SELQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 131

[Close]
BLAST of Carg09402 vs. TrEMBL
Match: tr|A0A1S3BB81|A0A1S3BB81_CUCME (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103488050 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.7e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. TrEMBL
Match: tr|A0A0A0LPG6|A0A0A0LPG6_CUCSA (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_2G368830 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.7e-74
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. TrEMBL
Match: tr|A0A097CPK5|A0A097CPK5_LINUS (Tubulin beta chain OS=Linum usitatissimum OX=4006 GN=TUB_3a PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.5e-72
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD SSD+QLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDESSDVQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. TrEMBL
Match: tr|B9R897|B9R897_RICCO (Tubulin beta chain OS=Ricinus communis OX=3988 GN=RCOM_1598040 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.6e-72
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD SSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDGSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

[Close]
BLAST of Carg09402 vs. TrEMBL
Match: tr|A0A061FKK0|A0A061FKK0_THECC (Tubulin beta chain OS=Theobroma cacao OX=3641 GN=TCM_034231 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.6e-72
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGR 60
           MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD SSDLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDGSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQ 134
           VVRKEAENCDCLQ
Sbjct: 121 VVRKEAENCDCLQ 133

The following BLAST results are available for this feature:
BLAST of Carg09402 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152649.12.6e-74100.00PREDICTED: tubulin beta chain [Cucumis sativus] >KGN62682.1 hypothetical protein... [more]
XP_008444814.12.6e-74100.00PREDICTED: tubulin beta chain [Cucumis melo][more]
XP_022144149.12.6e-74100.00tubulin beta-6 chain [Momordica charantia][more]
XP_022951577.12.6e-74100.00tubulin beta chain-like [Cucurbita moschata][more]
XP_022962240.12.6e-74100.00tubulin beta chain-like [Cucurbita moschata] >XP_022996981.1 tubulin beta chain-... [more]
BLAST of Carg09402 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75780.15.3e-7495.49tubulin beta-1 chain[more]
AT1G20010.17.7e-7393.23tubulin beta-5 chain[more]
AT5G12250.12.1e-7089.47beta-6 tubulin[more]
AT5G62690.11.0e-6990.23tubulin beta chain 2[more]
AT5G62700.11.0e-6990.23tubulin beta chain 3[more]
BLAST of Carg09402 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6VAF6|TBB6_GOSHI5.6e-7394.74Tubulin beta-6 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1[more]
sp|P12411|TBB1_ARATH9.6e-7395.49Tubulin beta-1 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB1 PE=2 SV=1[more]
sp|Q40665|TBB3_ORYSJ4.8e-7294.74Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2[more]
sp|Q6VAF7|TBB5_GOSHI4.8e-7293.98Tubulin beta-5 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1[more]
sp|P28551|TBB3_SOYBN1.4e-7193.98Tubulin beta chain (Fragment) OS=Glycine max OX=3847 GN=TUBB PE=2 SV=2[more]
BLAST of Carg09402 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BB81|A0A1S3BB81_CUCME1.7e-74100.00Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103488050 PE=3 SV=1[more]
tr|A0A0A0LPG6|A0A0A0LPG6_CUCSA1.7e-74100.00Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_2G368830 PE=3 SV=1[more]
tr|A0A097CPK5|A0A097CPK5_LINUS3.5e-7296.24Tubulin beta chain OS=Linum usitatissimum OX=4006 GN=TUB_3a PE=2 SV=1[more]
tr|B9R897|B9R897_RICCO4.6e-7296.24Tubulin beta chain OS=Ricinus communis OX=3988 GN=RCOM_1598040 PE=3 SV=1[more]
tr|A0A061FKK0|A0A061FKK0_THECC4.6e-7296.24Tubulin beta chain OS=Theobroma cacao OX=3641 GN=TCM_034231 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: INTERPRO
TermDefinition
IPR013838Beta-tubulin_BS
IPR036525Tubulin/FtsZ_GTPase_sf
IPR003008Tubulin_FtsZ_GTPase
IPR002453Beta_tubulin
IPR000217Tubulin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09402-RACarg09402-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 53..72
score: 68.16
coord: 10..30
score: 73.48
coord: 108..132
score: 70.19
coord: 95..106
score: 76.26
IPR000217TubulinPANTHERPTHR11588TUBULINcoord: 1..134
IPR002453Beta tubulinPRINTSPR01163BETATUBULINcoord: 110..128
score: 87.58
coord: 43..60
score: 82.0
coord: 90..101
score: 94.76
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 49..173
e-value: 4.7E-4
score: -15.4
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..134
e-value: 2.5E-36
score: 125.7
IPR036525Tubulin/FtsZ, GTPase domain superfamilyGENE3DG3DSA:3.40.50.1440coord: 1..146
e-value: 1.1E-62
score: 213.9
IPR036525Tubulin/FtsZ, GTPase domain superfamilySUPERFAMILYSSF52490Tubulin nucleotide-binding domain-likecoord: 1..134
NoneNo IPR availablePANTHERPTHR11588:SF116TUBULIN BETA-1 CHAIN-RELATEDcoord: 1..134
IPR013838Beta tubulin, autoregulation binding sitePROSITEPS00228TUBULIN_B_AUTOREGcoord: 1..4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09402Cp4.1LG11g02730Cucurbita pepo (Zucchini)carcpeB0199
Carg09402Cla97C08G157820Watermelon (97103) v2carwmbB0149
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09402Carg03991Silver-seed gourdcarcarB168
The following block(s) are covering this gene:
GeneOrganismBlock
Carg09402Silver-seed gourdcarcarB161
Carg09402Silver-seed gourdcarcarB167
Carg09402Cucumber (Gy14) v2carcgybB0150
Carg09402Cucumber (Gy14) v2carcgybB0152
Carg09402Cucumber (Gy14) v2carcgybB0157
Carg09402Cucumber (Gy14) v1carcgyB0172
Carg09402Cucumber (Gy14) v1carcgyB0176
Carg09402Cucurbita maxima (Rimu)carcmaB0183
Carg09402Cucurbita maxima (Rimu)carcmaB0187
Carg09402Cucurbita maxima (Rimu)carcmaB0188
Carg09402Cucurbita maxima (Rimu)carcmaB0189
Carg09402Cucurbita maxima (Rimu)carcmaB0190
Carg09402Cucurbita moschata (Rifu)carcmoB0190
Carg09402Cucurbita moschata (Rifu)carcmoB0192
Carg09402Cucurbita moschata (Rifu)carcmoB0195
Carg09402Cucurbita moschata (Rifu)carcmoB0196
Carg09402Cucurbita pepo (Zucchini)carcpeB0200
Carg09402Cucurbita pepo (Zucchini)carcpeB0201
Carg09402Cucurbita pepo (Zucchini)carcpeB0202
Carg09402Cucurbita pepo (Zucchini)carcpeB0205
Carg09402Wild cucumber (PI 183967)carcpiB0157
Carg09402Wild cucumber (PI 183967)carcpiB0159
Carg09402Wild cucumber (PI 183967)carcpiB0164
Carg09402Wild cucumber (PI 183967)carcpiB0165
Carg09402Cucumber (Chinese Long) v2carcuB0152
Carg09402Cucumber (Chinese Long) v2carcuB0154
Carg09402Cucumber (Chinese Long) v2carcuB0159
Carg09402Cucumber (Chinese Long) v3carcucB0160
Carg09402Cucumber (Chinese Long) v3carcucB0162
Carg09402Bottle gourd (USVL1VR-Ls)carlsiB124
Carg09402Bottle gourd (USVL1VR-Ls)carlsiB125
Carg09402Bottle gourd (USVL1VR-Ls)carlsiB127
Carg09402Bottle gourd (USVL1VR-Ls)carlsiB128
Carg09402Melon (DHL92) v3.5.1carmeB0141
Carg09402Melon (DHL92) v3.5.1carmeB0144
Carg09402Melon (DHL92) v3.5.1carmeB0147
Carg09402Melon (DHL92) v3.6.1carmedB0145
Carg09402Melon (DHL92) v3.6.1carmedB0148
Carg09402Watermelon (Charleston Gray)carwcgB0133
Carg09402Watermelon (Charleston Gray)carwcgB0134
Carg09402Watermelon (Charleston Gray)carwcgB0137
Carg09402Watermelon (97103) v1carwmB0133
Carg09402Watermelon (97103) v1carwmB0135
Carg09402Watermelon (97103) v1carwmB0137
Carg09402Watermelon (97103) v2carwmbB0143
Carg09402Watermelon (97103) v2carwmbB0144
Carg09402Watermelon (97103) v2carwmbB0145
Carg09402Watermelon (97103) v2carwmbB0146
Carg09402Wax gourdcarwgoB0173
Carg09402Wax gourdcarwgoB0181