Carg09299 (gene) Silver-seed gourd

NameCarg09299
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_018 : 453485 .. 456812 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCACTGGCGAAGGCTATGGCGGGGGTGGCGGCGGCGCGCATATGACGGGGATACAGAGAAGGCTAACCGGAGGTACCACCTCGACTCAGACGCCGACGCCGCCGCAGCTCCGGAGAGGTGAAAGATCAGAATAATGAAAAGGGAAGAGAAATGAAGGGTTTTTGGAGAAATTCTCCATGGATGAAGCTTAAGAAGTATATCCTTTTTCCTCTAATGACAAAATTAAAGATTAAAATGTAAAATACAAACAGTAATCCCAAGCAAAGCTTGTTTCTAACCTTTCTGAAAGCATAATCAATCTTTATGTAAATTATTCCCCTTCTGTTCATGCTTGCTTTATACTGTTCTTCCCAAGCTGCCTCCTCAATTCCTTCCTGGAAATTCCCTGTTTCAACAAGGTTGCCCCTAACAAGAAGCAATGCATTACAATCACAAACAAACTCCATACATTAGAACTACTGAATTCAATGTTAGGCAGCCAACAAAATGATTCAAGAACTGAGACCCATAATCATAAATTCTCAACGGAATCAGTCCAAAGCTATAAATCAACCCTGCACGAGTGAGACCCACAAACTAGACACTAAGACCATCGCTAACAGATATTGTCCTCTTTAGAGAAATTTGAAAGGGAAAGCCCAGAGAGGGTTTAGCCCTAGTTCGACAAGTGCCTTGCACCGTCCTGGTGATTGAACAAATATTGTGAGTTTCTACCTCGGTTGGAGAGGAGAATGAAATATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACAATATGTAACGGGCTAAAGCGAATAATATCTACTAGCGGTGAGCTTGGCTTGTTACACTAAGTATTGACTGAAGTTGAAGCAGATGCATAAAACATCAAAGGAGTCGTTGATTTAGTATAAACTATAAGTTTGTGTTATGTTCCCGTCGATAATGCCACGACAACATGCGATGAATACAAGTAAATGGACGATTTTGACCCGCATGACTTGAGAATAATGAAAAGTTGTTAAGAATTTACAATGGTGTTCTTATGGAATGATGTAAAATCCAATATAACATGTGGAGTCAGTTGCTTTACTCCTTAACTGATGAGTTTTAGCTCTTGATGGGATCAGCTATAACTCTATATCTGTTGCAAACATCAACCAGAATCTTCAGATACATGTATGAAGGTTTCTTGAAGAGAGAGGTTTGTTCACATTACTGATCCTTCGGCTTATTCCACATTCAAATGAAGAACTCCATTAGGTTCATATTCTATTTACCACAGCCCTTCTGTAAGCAGTCATTAAATCAAGCAACTTTCCTCACAACTGTCATACGGTGGAATCCTGTTTTGGGAACAAAAAACAAACTGATCATCATTGAAAATAACAGGTCTAAAGCATTGTATCTTTGACATGTGAAAGAATATGGTTGCTAAGTTGAATTTGATTCTCTCATTTCATGAAATTAAAAGCAATAATTCAGTTTAAAAAGTAGTGGACCTCATTTGATGACTGTGGCCTCGAATTGGAACTTGATGCAGAAGAGCGTAGAAGTAGACTCCGGCTTTCACGTTTGTCAGAACTCCTCCCAAGATCTCTTAACCTGTTGAGCTCTGGAACTATAACTGTTCCAAGATCTGGCCTGTCTCTCTTCCTCAGTTCAGCGCAATTCAATGCCAGTTTTGCAAAACTTATAGCCTCCTCCAATGGACAATCTGGAATTGTAGGATCCAGCATCTCATCAAACCTCTCTTTCTCAATAGCCCTTTGCACATGGTGAGCCAGACCCATTGGAGGCTTGGCAGTAATGATTTGAAGTAACATTATTCCAAACGAGTAAATATCCGATTTCGTTGTTAACTTTCCTGTTTGTTGATACTCGGGATCAATGTAACAAAATGTGCCAGCTGCTGAAGTCAGGTGATATTGAGTGACTTGATCAACTACAGAAGGTGGGACTAACCGGGCCAGGCCAACATCACTGATTTTGCTCACAAAATTGCGGTCCAAGAGAATGTTAGCTGGTTTAAGGTCCCTATGCACGAGCGGATCTGGCTTTGCTTGGTGAAGAAAAAGGAGTGCAGTAGCAATTTCAGCAGATATTTTGAATCGTCGTCTCCAAGATAATGGAGGAGTATTCCCTCTCCGGAAAAGTCTGTCTTCTAAGCTCCCATTCTGCATGTACTCATATACTAAGCAACCATACTCAGGGCATGCCCCAAGAAGAAGGACCATGTTTGGATGTCTAATAGAACAAAGGACCTCCACCTGCAAAACGATTAGAAAGGAAACTTTGGATGGATCCATGAACTAAAAACAGTAGAACTTCCTCAAAATTCTTGTTTATTTTAATCGAGTTTAAAGTGTCACTTTTGTAATTCCATTAACACGTTGGTTTAGTATGAACTGGATCATTTTAGGCACAGCGGTAGAACAATATGAGAGTACCTCTTGCTGGAATTGCTTCCGTCCTTGAGCAGCGTCAGGTCTTAAAACTTTAATCGCAACATCTGTATGATCAAGTTTGCCTACATAAACAGGACCGTATCCACCTTCTCCAACCTTCAATTTTTCAGAGAACCTTTCAGTAGACTCTTCAATCTCCTCTATAGTGTATTTTCTATATCGGACGTCATTCTGAGCTAAAGCACACAATGCTCGTTTTTTCTCTTCTGCCTCTCGTTTGGCCTTGATTTCAGCCTGTTTTCTTCTCTGGGCTTCTCTTTCGGCTAGCTTTTGTGCTGCCTCTGCTGCTTCAATGGCAGCTTTGCACTTGGCTTTCTCCATCTCAGCCATAGCTAGAGCGGCCTCTTCAGCTAGCCTGACTTCCTCAAACTTACGTGCCTCATCTTGCTTCCATTGACTAAGTTCTCTCGCCTGAATTTTAAGACAAATTTTCAACTAAACGTAAACTACAAATTTTCCTTTCAGATTTACTTCAACAAATCATTCTACGTTACTAGCAAAGTATTTGGTTGGATATAAACAACACAGAGTTGAGAACCCAATCTAAAGACTCATTATTCACTAACCATTATCAATAGAGTAGAGTGTTCTTATATTTATTTACCTTGTTCTTGGCTGAGATTGCCTCTTTACAGGCTGAGCTATACATATCCATGGTTTGCTTTAATTCCAACTTCAATCTTTTCATCTCAGCCTCTAGTTCCCGCTGTAGCAAAGAAGTCGGCAGAGATGTTAAATCAGTGCAACTGCAACTACGTAACTATCACAAGCACAAAATTTCAAATGCCAATGAACAATGTGCACTTACAGTAGATTGTGAGGAAGCAGAGTCCGTTGACAAATTTGAGGTAGTACTGAAATCTAAATTTTGA

mRNA sequence

ATGGGGCACTGGCGAAGGCTATGGCGGGGGTGGCGGCGGCGCGCATATGACGGGGATACAGAGAAGGCTAACCGGAGGTACCACCTCGACTCAGACGCCGACGCCGCCGCAGCTCCGGAGAGATACATGTATGAAGGTTTCTTGAAGAGAGAGTGGACCTCATTTGATGACTGTGGCCTCGAATTGGAACTTGATGCAGAAGAGCGTAGAAGTAGACTCCGGCTTTCACGTTTGTCAGAACTCCTCCCAAGATCTCTTAACCTGTTGAGCTCTGGAACTATAACTGTTCCAAGATCTGGCCTGTCTCTCTTCCTCAGTTCAGCGCAATTCAATGCCAGTTTTGCAAAACTTATAGCCTCCTCCAATGGACAATCTGGAATTGCTGAGCTATACATATCCATGGTTTGCTTTAATTCCAACTTCAATCTTTTCATCTCAGCCTCTAGTTCCCGCTGTAGCAAAGAAGTCGGCAGAGATGTTAAATCAGTGCAACTGCAACTACGTAACTATCACAAGCACAAAATTTCAAATGCCAATGAACAATGTGCACTTACAGTAGATTGTGAGGAAGCAGAGTCCGTTGACAAATTTGAGGTAGTACTGAAATCTAAATTTTGA

Coding sequence (CDS)

ATGGGGCACTGGCGAAGGCTATGGCGGGGGTGGCGGCGGCGCGCATATGACGGGGATACAGAGAAGGCTAACCGGAGGTACCACCTCGACTCAGACGCCGACGCCGCCGCAGCTCCGGAGAGATACATGTATGAAGGTTTCTTGAAGAGAGAGTGGACCTCATTTGATGACTGTGGCCTCGAATTGGAACTTGATGCAGAAGAGCGTAGAAGTAGACTCCGGCTTTCACGTTTGTCAGAACTCCTCCCAAGATCTCTTAACCTGTTGAGCTCTGGAACTATAACTGTTCCAAGATCTGGCCTGTCTCTCTTCCTCAGTTCAGCGCAATTCAATGCCAGTTTTGCAAAACTTATAGCCTCCTCCAATGGACAATCTGGAATTGCTGAGCTATACATATCCATGGTTTGCTTTAATTCCAACTTCAATCTTTTCATCTCAGCCTCTAGTTCCCGCTGTAGCAAAGAAGTCGGCAGAGATGTTAAATCAGTGCAACTGCAACTACGTAACTATCACAAGCACAAAATTTCAAATGCCAATGAACAATGTGCACTTACAGTAGATTGTGAGGAAGCAGAGTCCGTTGACAAATTTGAGGTAGTACTGAAATCTAAATTTTGA

Protein sequence

MGHWRRLWRGWRRRAYDGDTEKANRRYHLDSDADAAAAPERYMYEGFLKREWTSFDDCGLELELDAEERRSRLRLSRLSELLPRSLNLLSSGTITVPRSGLSLFLSSAQFNASFAKLIASSNGQSGIAELYISMVCFNSNFNLFISASSSRCSKEVGRDVKSVQLQLRNYHKHKISNANEQCALTVDCEEAESVDKFEVVLKSKF
BLAST of Carg09299 vs. NCBI nr
Match: PNT02391.1 (hypothetical protein POPTR_014G011200v3, partial [Populus trichocarpa])

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 84  RSLNLLSSGTITVPRSGLSLFLSSAQFNASFAKLIASSNGQSGIAELYISM 135
           +SL+LLSSG  +VPRSGLS  LSSA ++ASFAK  ASS GQSG AE  IS+
Sbjct: 1   KSLSLLSSGKTSVPRSGLSFRLSSAHWSASFAKHKASSIGQSGTAESRISL 51

BLAST of Carg09299 vs. TrEMBL
Match: tr|A0A2K1XNN5|A0A2K1XNN5_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_014G011200v3 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 84  RSLNLLSSGTITVPRSGLSLFLSSAQFNASFAKLIASSNGQSGIAELYISM 135
           +SL+LLSSG  +VPRSGLS  LSSA ++ASFAK  ASS GQSG AE  IS+
Sbjct: 1   KSLSLLSSGKTSVPRSGLSFRLSSAHWSASFAKHKASSIGQSGTAESRISL 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PNT02391.12.5e-0466.67hypothetical protein POPTR_014G011200v3, partial [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2K1XNN5|A0A2K1XNN5_POPTR1.7e-0466.67Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_014G0... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09299-RACarg09299-RAmRNA